Name: Halorubrum luteum CGSA15
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5958

Type strain:

Species: Halorubrum luteum

Strain Designation: CGSA15

Culture col. no.: DSM 23812, CECT 7303, CGMCC 1.6783, JCM 18237

Strain history: CGMCC 1.6783 <-- L. Hu et al. CGSA15.

NCBI tax ID(s): 406549 (species)

SI-ID 358813

CECT 7303, CGMCC 1.6783, DSM 23812

Section

Halorubrum luteum CGSA15 is an aerobe, mesophilic, Gram-negative archaeon that was isolated from water sample.

Gram-negative
motile
aerobe
mesophilic
16S sequence
Archaea

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Haloferacales*
	Family	*Halorubraceae*
	Genus	*Halorubrum*
	Species	**Halorubrum luteum**
	Full Scientific Name (LPSN)	Halorubrum luteum Hu et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32566]	Gram stain	negative

[Ref.: #32566]	Cell length	1.05 µm

[Ref.: #32566]	Cell width	0.7 µm

[Ref.: #32566]	Motility	yes

[Ref.: #32566]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17383]

Culture medium

NATRONOBACTERIA MEDIUM (DSMZ Medium 371)

[Ref.: #17383]

Culture medium growth

[Ref.: #17383]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17383]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17383]	growth	37 °C
[Ref.: #32566]	growth	17-41 °C
[Ref.: #32566]	optimum	35 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #17383]	Temperature range	mesophilic
[Ref.: #32566]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32566]			optimum	9.75
[Ref.: #32566]			growth	7.5-10.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32566]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32566]		NaCl		growth	14.5-30.16	%
[Ref.: #32566]		NaCl		optimum	24.07	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32566]	glucose ChEBI	+	carbon source
[Ref.: #32566]	lactose ChEBI	+	carbon source
[Ref.: #32566]	maltose ChEBI	+	carbon source
[Ref.: #32566]	mannitol ChEBI	+	carbon source
[Ref.: #32566]	mannose ChEBI	+	carbon source
[Ref.: #32566]	nitrate ChEBI	+	reduction
[Ref.: #32566]	sorbitol ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #32566]		hydrogen sulfide ChEBI	yes
[Ref.: #32566]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #32566]		indole ChEBI	+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32566]		catalase	+	1.11.1.6
[Ref.: #32566]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17383]	Sample type/isolated from	water sample
[Ref.: #17383]	Geographic location (country and/or sea, region)	Inner Mongolia, Lake Chagannor
[Ref.: #17383]	Country	China
[Ref.: #17383]	Country ISO 3 Code	CHN
[Ref.: #17383]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Water of Lake
[Ref.: #67770]	Geographic location (country and/or sea, region)	Chagannor, Inner Mongolia
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB576125 (>99% sequence identity) for Halorubrum luteum subclade from Microbeatlas

Aquatic Samples	10
Soil Samples	1
Animal Samples
Plant Samples
Total Samples	11

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17383]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17383]	Halorubrum luteum strain CGSA15 16S ribosomal RNA gene, partial sequence	DQ987877	1393	ENA	406549 tax ID
[Ref.: #20218]	Halorubrum luteum gene for 16S ribosomal RNA, partial sequence	AB576125	1471	ENA	406549 tax ID	*
[Ref.: #20218]	Halorubrum luteum gene for 16S rRNA, complete sequence, strain: CECT 7303	AB663417	1471	ENA	406549 tax ID	*

[Ref.: #17383]	GC-content	60.2 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #32566]	GC-content	60.2 mol%

Availability in culture collections External links

[Ref.: #17383]

Culture collection no.

DSM 23812, CECT 7303, CGMCC 1.6783, JCM 18237

[Ref.: #75447]

SI-ID 358813

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halorubrum aethiopicum sp. nov., an extremely halophilic archaeon isolated from commercial rock salt.	Gibtan A, Song HS, Kim JY, Kim YB, Park N, Park K, Lee SJ, Kwon J, Roh SW, Lee HS	Int J Syst Evol Microbiol	10.1099/ijsem.0.002525	2017	*
Phylogeny	Halorubrum gandharaense sp. nov., an alkaliphilic haloarchaeon from commercial rock salt.	Kondo Y, Minegishi H, Echigo A, Shimane Y, Kamekura M, Itoh T, Ohkuma M, Takahashi-Ando N, Fukushima Y, Yoshida Y, Usami R	Int J Syst Evol Microbiol	10.1099/ijs.0.000261	2015	*
Phylogeny	Halorubrum luteum sp. nov., isolated from Lake Chagannor, Inner Mongolia, China.	Hu L, Pan H, Xue Y, Ventosa A, Cowan DA, Jones BE, Grant WD, Ma Y	Int J Syst Evol Microbiol	10.1099/ijs.0.65700-0	2008	*

References

#17383

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23812

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32566

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28781 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75447

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID358813.1 )

#28781

IJSEM 1705 2008 ( DOI 10.1099/ijs.0.65700-0 , PubMed 18599720 )

* These data were automatically processed and therefore are not curated

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