Name: Halorubrum distributum DSM 23454
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5954

Type strain:

Species: Halorubrum distributum

Culture col. no.: DSM 23454, JCM 13916, CGMCC 1.5343, KCTC 4072

Strain history: X.-W. Xu AJ201.

NCBI tax ID(s): 368454 (species)

SI-ID 308614

CGMCC 1.5343, JCM 13916, DSM 23454

Other strains from Halorubrum distributum

H. distributum CIP 105238, ATCC 51197, JCM 9100, ... (type strain)
H. distributum Fa-1, DSM 23497, CGMCC 1.5336, ...

Section

Halorubrum distributum DSM 23454 is a mesophilic, Gram-negative archaeon that was isolated from Ayakekum salt lake on the Qinghai-Tibet Plateau.

Gram-negative
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Haloferacales*
	Family	*Halorubraceae*
	Genus	*Halorubrum*
	Species	**Halorubrum distributum**
	Full Scientific Name (LPSN)	Halorubrum distributum (Zvyagintseva and Tarasov 1989) Oren and Ventosa 1996

	Synonym	Halobacterium distributus
	Synonym	Halorubrum terrestre
	Synonym	Halorubrum arcis
	Synonym	Halorubrum litoreum
	Synonym	Halorubrobacterium distributum
	Synonym	Halobacterium distributum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.975

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17219]

Culture medium

HALOBACTERIA MEDIUM (DSMZ Medium 372)

[Ref.: #17219]

Culture medium growth

[Ref.: #17219]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17219]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17219]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #17219]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %92
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.986

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Ayakekum salt lake on the Qinghai-Tibet Plateau
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17219]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Halorubrum arcis strain AJ201 16S ribosomal RNA gene, partial sequence	DQ355793	1470	ENA	1230455 tax ID	*
[Ref.: #20218]	Halorubrum sp. AJ201 16S ribosomal RNA (rrnB) gene, partial sequence	EF108328	1470	ENA	1230455 tax ID	*
[Ref.: #20218]	Halorubrum arcis gene for 16S rRNA, complete sequence, strain: JCM 13916	AB663405	1470	ENA	1230455 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halorubrum arcis JCM 13916	GCA_000337015	contig	GenBank	1230455 tax ID
[Ref.: #66792]	Halorubrum arcis JCM 13916	1230455.3	wgs	PATRIC	1230455 tax ID	*

[Ref.: #67770]

GC-content

65.7 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halorubrum arcis JCM 13916 JCM 13916 NCBI: GCA_000337015.1
[Ref.: #69481]	spore-forming	no	92	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halorubrum arcis JCM 13916 PATRIC: 1230455.3
[Ref.: #69480]	motile	no	74.017	no
[Ref.: #69480]	gram-positive	no	98.125	no
[Ref.: #69480]	anaerobic	no	97.268	no
[Ref.: #69480]	aerobic	yes	82.276	no
[Ref.: #69480]	halophile	yes	89.634	no
[Ref.: #69480]	spore-forming	no	93.92	no
[Ref.: #69480]	thermophile	no	94.947	yes
[Ref.: #69480]	glucose-util	yes	88.621	no
[Ref.: #69480]	flagellated	no	95.503	no
[Ref.: #69480]	glucose-ferment	no	84.497	no

Availability in culture collections External links

[Ref.: #17219]

Culture collection no.

DSM 23454, JCM 13916, CGMCC 1.5343, KCTC 4072

[Ref.: #75443]

SI-ID 308614

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halorubrum salinum sp. nov., isolated from a marine solar saltern.	Zhang WJ, Cui HL	Arch Microbiol	10.1007/s00203-014-0975-1	2014	*
Phylogeny	Halorubrum arcis sp. nov., an extremely halophilic archaeon isolated from a saline lake on the Qinghai-Tibet Plateau, China.	Xu XW, Wu YH, Zhang HB, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.64921-0	2007	*

References

#17219

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23454

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75443

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID308614.1 )

* These data were automatically processed and therefore are not curated

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Halorubrum arcis JCM 13916 JCM 13916

Halorubrum arcis JCM 13916

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