Halorubrum californiense (DSM 19288, CECT 7256, JCM 14715)

Name: Halorubrum californiense (DSM 19288, CECT 7256, JCM 14715)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5953

Type strain

Strain Designation SF3-213

Culture col. no. DSM 19288 CECT 7256 JCM 14715 SF3-213

NCBI tax ID(s) 1227465 416585

Special Collections DSMZ JCM Literature strains

Links

Halorubrum californiense SF3-213 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from crystallizer pond at the Cargill Solar Salt Plant.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 360272

CECT 7256,DSM 19288,JCM 14715

@ref 20215

Last LPSN update 2025-12-16 09:48:11

Domain Methanobacteriati

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Haloferacaceae

Genus Halorubrum

Species Halorubrum californiense

Full scientific name Halorubrum californiense Pesenti et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
31210	negative	1-1.5 µm	0.5 µm	rod-shaped

Pigmentation

31210

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7999	HALORUBRUM CALIFORNIENSE MEDIUM (DSMZ Medium 1194)		Medium recipe at MediaDive	Name: HALORUBRUM CALIFORNIENSE MEDIUM (DSMZ Medium 1194) Composition: NaCl 156.0 g/l MgSO4 x 7 H2O 40.6 g/l MgCl2 x 6 H2O 26.0 g/l Agar 20.0 g/l Yeast extract 10.0 g/l KCl 4.0 g/l CaCl2 x 2 H2O 0.66 g/l NaBr 0.46 g/l NaHCO3 0.12 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7999	positive	growth	37	mesophilic
31210	positive	growth	25-42
31210	positive	optimum	37	mesophilic
67770	positive	growth	37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
31210	positive	optimum	7.3
31210	positive	growth	6.8-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

31210

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
31210
125439		93.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31210	NaCl	positive	growth	14.5-29 %
31210	NaCl	positive	optimum	20.3-26.1 %

Observation

31210

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31210	4853 ChEBI	esculin	+	hydrolysis
31210	28260 ChEBI	galactose	+	carbon source
31210	17234 ChEBI	glucose	+	carbon source
31210	17716 ChEBI	lactose	+	carbon source
31210	17632 ChEBI	nitrate	+	reduction

Enzymes

@ref	Value	Activity	Ec
31210	catalase	+	1.11.1.6
31210	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	#Plant (Factory)
#Environmental	#Aquatic	#Pond (small)
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
7999	crystallizer pond at the Cargill Solar Salt Plant	California, Newark (37° 29' N 122° 1' W)	USA	USA	North America	37.4833	-122.017 37.4833/-122.017
67770	Crystallizer pond at the Cargill Solar Salt Plant	Newark, CA	USA	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7999	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM33687v1 assembly for Halorubrum californiense DSM 19288	contig	GCA_000336875	1227465.4	2554235496	1227465	58.43

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Halorubrum californiense gene for 16S rRNA, complete sequence, strain: JCM 14715	AB663406	1470		416585
7999	Halorubrum californiense strain SF3-213 16S ribosomal RNA gene, partial sequence	EF139654	1436		416585

GC content

@ref	GC-content (mol%)	Method
7999	69.4	thermal denaturation, midpoint method (Tm)
31210	69.4

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Halorubrum californiense DSM 19288
NCBI: GCA_000336875

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	80.70	no
125439	gram_stain	BacteriaNetⓘ	negative	79.10	no
125439	motility	BacteriaNetⓘ	yes	54.50	no
125439	spore_formation	BacteriaNetⓘ	no	93.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genomic insights into Halorubrum ezzemoulense strain TC23: Genetic basis for halophilic traits and biotechnological potential.	Kesbic FI.	Sci Prog	10.1177/00368504251364316	2025
Phylogeny	Halorubrum californiense sp. nov., an extreme archaeal halophile isolated from a crystallizer pond at a solar salt plant in California, USA.	Pesenti PT, Sikaroodi M, Gillevet PM, Sanchez-Porro C, Ventosa A, Litchfield CD	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/002410-0	2008

References

#7999	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19288
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#31210	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27537 (see below)
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Halorubrum californiense (DSM 19288, CECT 7256, JCM 14715)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000336875

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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