Name: Halorubrum tibetense 8W8
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5948

Type strain:

Species: Halorubrum tibetense

Strain Designation: 8W8

Culture col. no.: DSM 23565, AS 1.3239, JCM 11889, CGMCC 1.3239

Strain history: H. Fan 8W8.

NCBI tax ID(s): 175631 (species)

SI-ID 132780

AS 1.3239, JCM 11889, CGMCC 1.3239, DSM 23565

Special Collections

DSMZ
JCM

Other strains from Halorubrum tibetense

Section

Halorubrum tibetense 8W8 is an archaeon that was isolated from alkaline chloride-sulfate salt lake.

16S sequence
Archaea

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Haloferacales*
	Family	*Halorubraceae*
	Genus	*Halorubrum*
	Species	**Halorubrum tibetense**
	Full Scientific Name (LPSN)	Halorubrum tibetense Fan et al. 2004

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17287]

Culture medium

NATRONOBACTERIA MEDIUM (DSMZ Medium 371)

[Ref.: #17287]

Culture medium growth

[Ref.: #17287]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17287]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17287]			growth	37 °C
[Ref.: #67770]			growth	37 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17287]	Sample type/isolated from	alkaline chloride-sulfate salt lake
[Ref.: #17287]	Geographic location (country and/or sea, region)	Tibet, Lake Zabuye, (31° 20' N 84° 05' E)
[Ref.: #17287]	Country	China
[Ref.: #17287]	Country ISO 3 Code	CHN
[Ref.: #17287]	Continent	Asia
[Ref.: #17287]	Geographic location	31.3333°/84.0833°

[Ref.: #67770]	Sample type/isolated from	Lake Zabuye
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tibetan Plateau
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Lake (large)
#Condition	#Alkaline	-
#Condition	#Saline	-
#Condition	#Sulfuric	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY149598 (>99% sequence identity) for Halorubrum tibetense subclade from Microbeatlas

Aquatic Samples	24
Soil Samples
Animal Samples	1
Plant Samples
Total Samples	25

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17287]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17287]	Halorubrum tibetense strain 8W8 16S ribosomal RNA gene, partial sequence	AY149598	1470	GenBank ENA	175631 tax ID
[Ref.: #20218]	Halorubrum tibetense gene for 16S rRNA, complete sequence, strain: JCM 11889	AB663423	1471	GenBank ENA	175631 tax ID	*

[Ref.: #17287]

GC-content

63.3 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #17287]

Culture collection no.

DSM 23565, AS 1.3239, JCM 11889, CGMCC 1.3239

[Ref.: #75437]

SI-ID 132780

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halorubrum luteum sp. nov., isolated from Lake Chagannor, Inner Mongolia, China.	Hu L, Pan H, Xue Y, Ventosa A, Cowan DA, Jones BE, Grant WD, Ma Y	Int J Syst Evol Microbiol	10.1099/ijs.0.65700-0	2008	*
Phylogeny	Halorubrum orientale sp. nov., a halophilic archaeon isolated from Lake Ejinor, Inner Mongolia, China.	Castillo AM, Gutierrez MC, Kamekura M, Xue Y, Ma Y, Cowan DA, Jones BE, Grant WD, Ventosa A	Int J Syst Evol Microbiol	10.1099/ijs.0.64420-0	2006	*
Phylogeny	Halorubrum tibetense sp. nov., a novel haloalkaliphilic archaeon from Lake Zabuye in Tibet, China.	Fan H, Xue Y, Ma Y, Ventosa A, Grant WD	Int J Syst Evol Microbiol	10.1099/ijs.0.03032-0	2004	*

References

#17287

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23565

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75437

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID132780.1 )

* These data were automatically processed and therefore are not curated

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