Haloferax mediterranei R-4 is a mesophilic prokaryote that was isolated from solar salt pond.
mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Methanobacteriati |
| Phylum Methanobacteriota |
| Class Halobacteria |
| Order Halobacteriales |
| Family Haloferacaceae |
| Genus Haloferax |
| Species Haloferax mediterranei |
| Full scientific name Haloferax mediterranei (Rodriguez-Valera et al. 1983) Torreblanca et al. 1987 |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 496 | HALOBACTERIA MEDIUM (DSMZ Medium 372) | Medium recipe at MediaDive | Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water |
Global distribution of 16S sequence D11107 (>99% sequence identity) for Haloferax from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM30676v2 assembly for Haloferax mediterranei ATCC 33500 CGMCC 1.2087 | complete | 523841 | 98.62 | ||||
| 66792 | Haloferax mediterranei R-4 | complete | 523841 | 98.12 | ||||
| 66792 | ASM540632v1 assembly for Haloferax mediterranei ATCC 33500 | complete | 523841 | 97.79 | ||||
| 66792 | ASM68563v1 assembly for Haloferax mediterranei ATCC 33500 | chromosome | 523841 | 83.33 | ||||
| 124043 | ASM3384302v1 assembly for Haloferax mediterranei ATCC 33500 | contig | 523841 | 78.58 | ||||
| 67770 | ASM33729v1 assembly for Haloferax mediterranei ATCC 33500 | contig | 523841 | 76.31 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Haloferax mediterranei ATCC 33500 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA spacer region and tRNA-Ala genes, complete sequence; 23S ribosomal RNA genes, partial sequence; 23S-5S ribosomal RNA spacer region gene, complete sequence; and 5S ribosomal RNA gene, partial sequence | AH009830 | 422 | 523841 | ||
| 496 | Haloferax mediterranei gene for 16S rRNA, strain: ATCC 33500 | D11107 | 1472 | 523841 | ||
| 124043 | Haloferax mediterranei gene for 16S rRNA, complete sequence, strain: JCM 8866. | AB663379 | 1473 | 2252 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 93.80 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 50.20 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 82.50 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 78.70 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 73.89 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 83.80 | no |
| 125438 | aerobic | aerobicⓘ | yes | 83.58 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 80.63 | no |
| 125438 | thermophilic | thermophileⓘ | no | 81.09 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 82.50 | no |
| Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|
| Characterizing the growth of PHA-producing microorganisms on short-chain carboxylic acids. | Leonhardt S, Tamang P, Tovar GEM, Zibek S. | Microb Cell Fact | 10.1186/s12934-025-02840-8 | 2025 | |
| Genetic algorithm-optimized artificial neural network for multi-objective optimization of biomass and exopolysaccharide production by Haloferax mediterranei. | Al Rawahi AM, Zafar M, Khan TA, Al Araimi S, Mahanty B, Behera SK. | Bioprocess Biosyst Eng | 10.1007/s00449-025-03143-3 | 2025 | |
| Purification and Characterization of Polyhydroxyalkanoate Synthase from Extremely Halophilic Archaeon Haloferax mediterranei: Key Enzyme of Biodegradable Plastic Synthesis. | Alsafadi D, Ghalawinji Y, Khalili FI. | Bioengineering (Basel) | 10.3390/bioengineering12091003 | 2025 | |
| Bioconversion of bread waste into high-quality proteins and biopolymers by fermentation of archaea Haloferax mediterranei. | Unis R, Gnaim R, Kashyap M, Shamis O, Gnayem N, Gozin M, Liberzon A, Gnaim J, Golberg A. | Front Microbiol | 10.3389/fmicb.2024.1491333 | 2024 | |
| Continuous bioreactor production of polyhydroxyalkanoates in Haloferax mediterranei. | Parroquin-Gonzalez M, Winterburn J. | Front Bioeng Biotechnol | 10.3389/fbioe.2023.1220271 | 2023 | |
| Toward Sustainable Polyhydroxyalkanoates: A Next-Gen Biotechnology Approach. | Kalia VC, Singh RV, Gong C, Lee JK. | Polymers (Basel) | 10.3390/polym17070853 | 2025 | |
| Bioplastic Production from Agri-Food Waste through the Use of Haloferax mediterranei: A Comprehensive Initial Overview | Longo A, Fanelli F, Villano M, Montemurro M, Rizzello C. | Microorganisms | 2024 | ||
| Haloarchaea as Cell Factories to Produce Bioplastics. | Simo-Cabrera L, Garcia-Chumillas S, Hagagy N, Saddiq A, Tag H, Selim S, AbdElgawad H, Arribas Aguero A, Monzo Sanchez F, Canovas V, Pire C, Martinez-Espinosa RM. | Mar Drugs | 10.3390/md19030159 | 2021 | |
| Valorization of Algal Biomass to Produce Microbial Polyhydroxyalkanoates: Recent Updates, Challenges, and Perspectives. | Narayanasamy A, Patel SKS, Singh N, Rohit MV, Lee JK. | Polymers (Basel) | 10.3390/polym16152227 | 2024 | |
| Electrospun poly(3-hydroxybutyrate-co-3-hydroxyvalerate) scaffolds - a step towards ligament repair applications. | Khamplod T, Winterburn JB, Cartmell SH. | Sci Technol Adv Mater | 10.1080/14686996.2022.2149034 | 2022 | |
| A Review of Polyhydroxyalkanoates: Characterization, Production, and Application from Waste. | Getino L, Martin JL, Chamizo-Ampudia A. | Microorganisms | 10.3390/microorganisms12102028 | 2024 | |
| Soft Sensor-Based Monitoring and Efficient Control Strategies of Biomass Concentration for Continuous Cultures of Haloferax mediterranei and Their Application to an Industrial Production Chain. | Mainka T, Mahler N, Herwig C, Pflugl S. | Microorganisms | 10.3390/microorganisms7120648 | 2019 | |
| Reducing Organic Load From Industrial Residual Process Brine With a Novel Halophilic Mixed Culture: Scale-Up and Long-Term Piloting of an Integrated Bioprocess. | Mainka T, Herwig C, Pflugl S. | Front Bioeng Biotechnol | 10.3389/fbioe.2022.896576 | 2022 | |
| What Is New in the Field of Industrial Wastes Conversion into Polyhydroxyalkanoates by Bacteria? | Marciniak P, Mozejko-Ciesielska J. | Polymers (Basel) | 10.3390/polym13111731 | 2021 | |
| Utilization of Sugarcane Bagasse by Halogeometricum borinquense Strain E3 for Biosynthesis of Poly(3-hydroxybutyrate-co-3-hydroxyvalerate). | Salgaonkar BB, Braganca JM. | Bioengineering (Basel) | 10.3390/bioengineering4020050 | 2017 | |
| Utilization of vinasse for production of poly-3-(hydroxybutyrate-co-hydroxyvalerate) by Haloferax mediterranei. | Bhattacharyya A, Pramanik A, Maji SK, Haldar S, Mukhopadhyay UK, Mukherjee J. | AMB Express | 10.1186/2191-0855-2-34 | 2012 | |
| Targeting Aspergillus allergen oryzin with a chemical probe at atomic precision. | Pattelli ON, Diec DDL, Guo W, Russi S, Fernandez D. | Sci Rep | 10.1038/s41598-023-45028-z | 2023 | |
| Recent Trends in the Production and Recovery of Bioplastics Using Polyhydroxyalkanoates Copolymers. | Garcia A, Aguirre C, Perez A, Bahamonde SS, Urtuvia V, Diaz-Barrera A, Pena C. | Microorganisms | 10.3390/microorganisms12112135 | 2024 | |
| Archaeal production of polyhydroxyalkanoate (PHA) co- and terpolyesters from biodiesel industry-derived by-products. | Hermann-Krauss C, Koller M, Muhr A, Fasl H, Stelzer F, Braunegg G. | Archaea | 10.1155/2013/129268 | 2013 | |
| Food waste conversion to microbial polyhydroxyalkanoates. | Nielsen C, Rahman A, Rehman AU, Walsh MK, Miller CD. | Microb Biotechnol | 10.1111/1751-7915.12776 | 2017 | |
| Generation of PHB from Spent Sulfite Liquor Using Halophilic Microorganisms. | Weissgram M, Gstottner J, Lorantfy B, Tenhaken R, Herwig C, Weber HK. | Microorganisms | 10.3390/microorganisms3020268 | 2015 | |
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| Potential and Prospects of Continuous Polyhydroxyalkanoate (PHA) Production. | Koller M, Braunegg G. | Bioengineering (Basel) | 10.3390/bioengineering2020094 | 2015 | |
| Recent Advances and Challenges towards Sustainable Polyhydroxyalkanoate (PHA) Production. | Kourmentza C, Placido J, Venetsaneas N, Burniol-Figols A, Varrone C, Gavala HN, Reis MAM. | Bioengineering (Basel) | 10.3390/bioengineering4020055 | 2017 | |
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| Identification and Mitigation of Inhibitory Substances Contained in High-Salinity Crude Glycerol Generated from Biodiesel Production for Polyhydroxyalkanoate Synthesis by Haloferax mediterranei. | Zhang X, Helm RF, McCoy EL, Zhao F, Wang M, Li Y, Lansing S, Huang H, Wang Z. | ACS Sustain Chem Eng | 10.1021/acssuschemeng.5c05475 | 2025 | |
| Halocin H4 is activated through cleavage by halolysin HlyR4. | Chen S, Dai Y, Ke J, Luo Y, Wang C, Hao Y, Zhang A, Han J, Xiang H. | Appl Environ Microbiol | 10.1128/aem.02284-23 | 2024 | |
| Production of Poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV) by Haloferax mediterranei Using Candy Industry Waste as Raw Materials. | Simo-Cabrera L, Garcia-Chumillas S, Benitez-Benitez SJ, Canovas V, Monzo F, Pire C, Martinez-Espinosa RM. | Bioengineering (Basel) | 10.3390/bioengineering11090870 | 2024 | |
| Study on the production of high 3HV content PHBV via an open fermentation with waste silkworm excrement as the carbon source by the haloarchaeon Haloferax mediterranei. | Cai S, Wu Y, Liu R, Jia H, Qiu Y, Jiang M, Ma Y, Yang X, Zhang S, Zhao Y, Cai L. | Front Microbiol | 10.3389/fmicb.2022.981605 | 2022 | |
| Deepening the knowledge of universal stress proteins in Haloferax mediterranei. | Matarredona L, Zafrilla B, Rubio-Portillo E, Bonete MJ, Esclapez J. | Appl Microbiol Biotechnol | 10.1007/s00253-023-12899-1 | 2024 | |
| Towards the Understanding of the Function of Lanthipeptide and TOMM-Related Genes in Haloferax mediterranei. | Costa T, Cassin E, Moreirinha C, Mendo S, Caetano TS. | Biology (Basel) | 10.3390/biology12020236 | 2023 | |
| Analysis of the external signals driving the transcriptional regulation of the main genes involved in denitrification in Haloferax mediterranei. | Miralles-Robledillo JM, Martinez-Espinosa RM, Pire C. | Front Microbiol | 10.3389/fmicb.2023.1109550 | 2023 | |
| A Haloarchaeal Transcriptional Regulator That Represses the Expression of CRISPR-Associated Genes. | Turgeman-Grott I, Shalev Y, Shemesh N, Levy R, Eini I, Pasmanik-Chor M, Gophna U. | Microorganisms | 10.3390/microorganisms12091772 | 2024 | |
| Production, characterization, and genomic insights of a human lectin-binding exopolysaccharide from Haloarcula japonica strain SST1. | Ghevondyan D, Hakobyan A, Margaryan A, Finore I, Cattaneo A, Chiodo F, Birkeland NK, Poli A, Panosyan H. | Sci Rep | 10.1038/s41598-025-18462-4 | 2025 | |
| Halolysin R4 of Haloferax mediterranei confers its host antagonistic and defensive activities. | Chen S, Sun S, Wang R, Feng H, Xiang H. | Appl Environ Microbiol | 10.1128/aem.02889-20 | 2021 | |
| Coupling Magnetic Field and Salinity Upshock To Improve Polyhydroxyalkanoate Productivity by Haloferax mediterranei Feeding on Molasses Wastewater. | Chen S, Cui YW, Huang MQ. | Appl Environ Microbiol | 10.1128/aem.00305-22 | 2022 | |
| Methylomes of Two Extremely Halophilic Archaea Species, Haloarcula marismortui and Haloferax mediterranei. | DasSarma S, Fomenkov A, DasSarma SL, Vincze T, DasSarma P, Roberts RJ. | Microbiol Resour Announc | 10.1128/mra.00577-19 | 2019 | |
| Production of Polyhydroxyalkanoates (PHA) by Haloferax mediterranei from Food Waste Derived Nutrients for Biodegradable Plastic Applications. | Wang K, Zhang R. | J Microbiol Biotechnol | 10.4014/jmb.2008.08057 | 2021 | |
| Towards the Elucidation of Assimilative nasABC Operon Transcriptional Regulation in Haloferax mediterranei. | Pastor-Soler S, Camacho M, Bautista V, Bonete MJ, Esclapez J. | Genes (Basel) | 10.3390/genes12050619 | 2021 | |
| Haloferax mediterranei Cells as C50 Carotenoid Factories. | Giani M, Montero-Lobato Z, Garbayo I, Vilchez C, Vega JM, Martinez-Espinosa RM. | Mar Drugs | 10.3390/md19020100 | 2021 | |
| Expression, purification, and enzymatic characterization of an extracellular protease from Halococcus salifodinae. | Hong T, Pan R, Ke J, Luo Y, Hao Y, Chen L, Tu D, Dai Y, Chen T, Chen S. | Braz J Microbiol | 10.1007/s42770-023-01114-y | 2023 | |
| Lipidomic chemotaxonomy aligned with phylogeny of Halobacteria. | Yao W, Zhang W, He W, Xiao W, Chen Y, Zhu Y, Zheng F, Zhang C. | Front Microbiol | 10.3389/fmicb.2023.1297600 | 2023 | |
| Process Development of Polyhydroxyalkanoates Production by Halophiles Valorising Food Waste. | Wang K, Chen C, Zhang R. | Bioengineering (Basel) | 10.3390/bioengineering9110630 | 2022 | |
| Neighboring inteins interfere with one another's homing capacity. | Turgeman-Grott I, Arsenault D, Yahav D, Feng Y, Miezner G, Naki D, Peri O, Papke RT, Gogarten JP, Gophna U. | PNAS Nexus | 10.1093/pnasnexus/pgad354 | 2023 | |
| Heterologous and Homologous Expression of Proteins from Haloarchaea: Denitrification as Case of Study. | Martinez-Espinosa RM. | Int J Mol Sci | 10.3390/ijms21010082 | 2019 | |
| Genome Sequence of the Poly-3-Hydroxybutyrate Producer Clostridium acetireducens DSM 10703. | Fluchter S, Poehlein A, Schiel-Bengelsdorf B, Daniel R, Durre P. | Genome Announc | 10.1128/genomea.01399-16 | 2016 | |
| A Halocin Promotes DNA Uptake in Haloferax mediterranei. | Chen S, Sun S, Korfanty GA, Liu J, Xiang H. | Front Microbiol | 10.3389/fmicb.2019.01960 | 2019 | |
| Unusual Phosphoenolpyruvate (PEP) Synthetase-Like Protein Crucial to Enhancement of Polyhydroxyalkanoate Accumulation in Haloferax mediterranei Revealed by Dissection of PEP-Pyruvate Interconversion Mechanism. | Chen J, Mitra R, Zhang S, Zuo Z, Lin L, Zhao D, Xiang H, Han J. | Appl Environ Microbiol | 10.1128/aem.00984-19 | 2019 | |
| Comparative Genomic Insights into the Evolution of Halobacteria-Associated "Candidatus Nanohaloarchaeota". | Zhao D, Zhang S, Kumar S, Zhou H, Xue Q, Sun W, Zhou J, Xiang H. | mSystems | 10.1128/msystems.00669-22 | 2022 | |
| Complete genome sequence of the metabolically versatile halophilic archaeon Haloferax mediterranei, a poly(3-hydroxybutyrate-co-3-hydroxyvalerate) producer. | Han J, Zhang F, Hou J, Liu X, Li M, Liu H, Cai L, Zhang B, Chen Y, Zhou J, Hu S, Xiang H. | J Bacteriol | 10.1128/jb.00880-12 | 2012 | |
| Divergent degeneration of creA antitoxin genes from minimal CRISPRs and the convergent strategy of tRNA-sequestering CreT toxins. | Cheng F, Wang R, Yu H, Liu C, Yang J, Xiang H, Li M. | Nucleic Acids Res | 10.1093/nar/gkab821 | 2021 | |
| Small RNAs of Haloferax mediterranei: Identification and Potential Involvement in Nitrogen Metabolism. | Paya G, Bautista V, Camacho M, Castejon-Fernandez N, Alcaraz LA, Bonete MJ, Esclapez J. | Genes (Basel) | 10.3390/genes9020083 | 2018 | |
| A patatin-like protein associated with the polyhydroxyalkanoate (PHA) granules of Haloferax mediterranei acts as an efficient depolymerase in the degradation of native PHA. | Liu G, Hou J, Cai S, Zhao D, Cai L, Han J, Zhou J, Xiang H. | Appl Environ Microbiol | 10.1128/aem.04269-14 | 2015 | |
| Activation of a dormant replication origin is essential for Haloferax mediterranei lacking the primary origins. | Yang H, Wu Z, Liu J, Liu X, Wang L, Cai S, Xiang H. | Nat Commun | 10.1038/ncomms9321 | 2015 | |
| Propionyl coenzyme A (propionyl-CoA) carboxylase in Haloferax mediterranei: Indispensability for propionyl-CoA assimilation and impacts on global metabolism. | Hou J, Xiang H, Han J. | Appl Environ Microbiol | 10.1128/aem.03167-14 | 2015 | |
| An Acidic Exopolysaccharide from Haloarcula hispanica ATCC33960 and Two Genes Responsible for Its Synthesis. | Lu Y, Lu H, Wang S, Han J, Xiang H, Jin C. | Archaea | 10.1155/2017/5842958 | 2017 | |
| Peeling the Layers Away: The Genomic Characterization of Bacillus pumilus 64-1, an Isolate With Antimicrobial Activity From the Marine Sponge Plakina cyanorosea (Porifera, Homoscleromorpha). | Freitas-Silva J, de Oliveira BFR, Vigoder FM, Muricy G, Dobson ADW, Laport MS. | Front Microbiol | 10.3389/fmicb.2020.592735 | 2020 | |
| Characterization of multicomponent antioxidants from Haloferax alexandrinus GUSF-1 (KF796625). | Alvares JJ, Furtado IJ. | 3 Biotech | 10.1007/s13205-020-02584-9 | 2021 | |
| HtrAs are essential for the survival of the haloarchaeon Natrinema gari J7-2 in response to heat, high salinity, and toxic substances. | Luo H, Qu X, Deng X, He L, Wu Y, Liu Y, He D, Yin J, Wang B, Gan F, Tang B, Tang X-F. | Appl Environ Microbiol | 10.1128/aem.02048-23 | 2024 | |
| Identification of the haloarchaeal phasin (PhaP) that functions in polyhydroxyalkanoate accumulation and granule formation in Haloferax mediterranei. | Cai S, Cai L, Liu H, Liu X, Han J, Zhou J, Xiang H. | Appl Environ Microbiol | 10.1128/aem.07114-11 | 2012 | |
| Interplay of intracellular and trans-cellular DNA methylation in natural archaeal consortia. | Reva ON, La Cono V, Crisafi F, Smedile F, Mudaliyar M, Ghosal D, Giuliano L, Krupovic M, Yakimov MM. | Environ Microbiol Rep | 10.1111/1758-2229.13258 | 2024 | |
| A novel DNA-binding protein, PhaR, plays a central role in the regulation of polyhydroxyalkanoate accumulation and granule formation in the haloarchaeon Haloferax mediterranei. | Cai S, Cai L, Zhao D, Liu G, Han J, Zhou J, Xiang H. | Appl Environ Microbiol | 10.1128/aem.02878-14 | 2015 | |
| Multiple propionyl coenzyme A-supplying pathways for production of the bioplastic poly(3-hydroxybutyrate-co-3-hydroxyvalerate) in Haloferax mediterranei. | Han J, Hou J, Zhang F, Ai G, Li M, Cai S, Liu H, Wang L, Wang Z, Zhang S, Cai L, Zhao D, Zhou J, Xiang H. | Appl Environ Microbiol | 10.1128/aem.03915-12 | 2013 | |
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| Haloarchaea have a high genomic diversity for the biosynthesis of carotenoids of biotechnological interest. | Serrano S, Mendo S, Caetano T | Res Microbiol | 10.1016/j.resmic.2021.103919 | 2021 | |
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| The structure of the exopolysaccharide produced by the halophilic Archaeon Haloferax mediterranei strain R4 (ATCC 33500). | Parolis H, Parolis LA, Boan IF, Rodriguez-Valera F, Widmalm G, Manca MC, Jansson PE, Sutherland IW | Carbohydr Res | 10.1016/s0008-6215(96)90134-2 | 1996 | |
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| #496 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1411 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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BacDive in 2025: the core database for prokaryotic strain data