Name: Haloarcula quadrata 801030/1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5907

Type strain:

Species: Haloarcula quadrata

Strain Designation: 801030/1

Culture col. no.: DSM 11927, JCM 11048, ATCC 700850, CGMCC 1.4298, CGMCC 1.6164

Strain history: DSM 11927 <-- A. Oren <-- M. Kessel 801030/1.

NCBI tax ID(s): 182779 (species)

SI-ID 44175

ATCC 700850, DSM 11927, JCM 11048

Special Collections

DSMZ
JCM

Section

Haloarcula quadrata 801030/1 is an archaeon that was isolated from brine pool.

16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Haloarculaceae*
	Genus	*Haloarcula*
	Species	**Haloarcula quadrata**
	Full Scientific Name (LPSN)	Haloarcula quadrata Oren et al. 1999

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4542]

Culture medium

HALOBACTERIUM MEDIUM (DSMZ Medium 97)

[Ref.: #4542]

Culture medium growth

[Ref.: #4542]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4542]

Culture medium composition

expand / minimize

[Ref.: #4542]

Culture medium

HALOBACTERIA MEDIUM (DSMZ Medium 372)

[Ref.: #4542]

Culture medium growth

[Ref.: #4542]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4542]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4542]			growth	35 °C
[Ref.: #67770]			growth	37 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4542]	Sample type/isolated from	brine pool
[Ref.: #4542]	Geographic location (country and/or sea, region)	Sinai, sabkha Gavish
[Ref.: #4542]	Country	Egypt
[Ref.: #4542]	Country ISO 3 Code	EGY
[Ref.: #4542]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Brine water from Sebkha Gavish
[Ref.: #67770]	Geographic location (country and/or sea, region)	Southern Sinai
[Ref.: #67770]	Country	Egypt
[Ref.: #67770]	Country ISO 3 Code	EGY
[Ref.: #67770]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Condition	#Saline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4542]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Haloarcula sp. gene for 16S rRNA	AB010964	1471	GenBank ENA	182779 tax ID	*
[Ref.: #20218]	Haloarcula sp. gene for 16S rRNA	AB010965	1470	GenBank ENA	182779 tax ID	*
[Ref.: #20218]	Haloarcula quadrata gene for 16S ribosomal RNA, partial sequence, strain: JCM 11048	AB355988	1472	GenBank ENA	182779 tax ID	*
[Ref.: #20218]	Haloarcula quadrata gene for 16S ribosomal RNA, partial sequence, strain: JCM 11048	AB605777	1472	GenBank ENA	182779 tax ID	*
[Ref.: #20218]	Haloarcula quadrata strain JCM11048 16S ribosomal RNA (rrnA) gene, complete sequence	EF645689	1472	GenBank ENA	182779 tax ID	*
[Ref.: #20218]	Haloarcula quadrata strain JCM11048 16S ribosomal RNA (rrnB) gene, complete sequence	EF645694	1472	GenBank ENA	182779 tax ID	*
[Ref.: #124043]	Haloarcula quadrata gene for 16S ribosomal RNA, partial sequence, strain: JCM 11048.	LC198787	1405	GenBank ENA	182779 tax ID	*
[Ref.: #124043]	Haloarcula quadrata gene for 16S ribosomal RNA, partial sequence, strain: JCM 11048.	LC198788	1405	GenBank ENA	182779 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Haloarcula quadrata DSM 11927	GCA_003634715	contig	GenBank ENA	182779 tax ID
[Ref.: #66792]	Haloarcula quadrata DSM 11927	2778260947	draft	JGI IMG/M	182779 tax ID	*
[Ref.: #66792]	Haloarcula quadrata strain DSM 11927	182779.7	wgs	PATRIC	182779 tax ID	*

[Ref.: #67770]

GC-content

60.1 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #4542]

Culture collection no.

DSM 11927, JCM 11048, ATCC 700850, CGMCC 1.4298, CGMCC 1.6164

[Ref.: #75388]

SI-ID 44175

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloarcula quadrata sp. nov., a square, motile archaeon isolated from a brine pool in Sinai (Egypt).	Oren A, Ventosa A, Gutierrez MC, Kamekura M	Int J Syst Bacteriol	10.1099/00207713-49-3-1149	1999	*

References

#4542

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11927

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#75388

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44175.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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