Haloarcula japonica (DSM 6131, ATCC 49778, JCM 7785)

Name: Haloarcula japonica (DSM 6131, ATCC 49778, JCM 7785)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5905

Type strain

Strain Designation TR-1

Culture col. no. DSM 6131 ATCC 49778 JCM 7785 TR-1 CGMCC 1.3717 4 more

NCBI tax ID(s) 1227453 29282

Special Collections DSMZ JCM

History <- JCM T. Takashina TR-1.

Links

Haloarcula japonica TR-1 is an archaeon that was isolated from saltern soil.

genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 45242

ATCC 49778,JCM 7785,DSM 6131,NCIMB 13157,VKM B-2009,NBRC 101032

@ref 20215

Last LPSN update 2026-02-09 11:19:05

Domain Archaea

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Haloarculaceae

Genus Haloarcula

Species Haloarcula japonica

Full scientific name Haloarcula japonica Takashina et al. 1991

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	91.4

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
2497	HALOBACTERIA MEDIUM (DSMZ Medium 372)		Medium recipe at MediaDive	Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
2497	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		94.8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
2497	saltern soil	Nato Peninsula	Japan	JPN	Asia
67770	Saltern soil at Noto Peninsula		Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB355986 (>99% sequence identity) for Haloarcula from Microbeatlas

Aquatic Samples	11
Soil Samples	13
Animal Samples	2
Plant Samples
Total Samples	26

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
2497	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3954519v1 assembly for Haloarcula japonica NBRC 101032	contig	GCA_039545195			29282	73.28
67770	ASM33663v1 assembly for Haloarcula japonica DSM 6131	contig	GCA_000336635	1227453.3	2534681902	1227453	68.54

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Haloarcula japonica gene for 16S ribosomal RNA, partial sequence, strain: JCM 7785	AB355986	1472	29282
20218	Haloarcula japonica gene for 16S rRNA, complete sequence, strain: JCM 7785	AB663353	1472	29282
20218	Haloarcula japonica strain JCM7785 16S ribosomal RNA (rrnA) gene, complete sequence	EF645684	1472	29282
20218	Haloarcula japonica strain JCM7785 16S ribosomal RNA (rrnB) gene, complete sequence	EF645685	1472	29282
20218	Haloarcula japonica strain JCM7785 16S ribosomal RNA (rrnC) gene, complete sequence	EF645686	1472	29282
20218	Haloarcula japonica gene for 16S ribosomal RNA, partial sequence	D28872	1424	29282
124043	Haloarcula japonica gene for 16S ribosomal RNA, partial sequence, strain: JCM7785, note: rrsA.	LC085248	1405	29282
124043	Haloarcula japonica gene for 16S ribosomal RNA, partial sequence, strain: JCM7785, note: rrsC.	LC085249	1405	29282

GC content

@ref	GC-content (mol%)	Method
67770	63.3	Buoyant density centrifugation (BD)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Haloarcula japonica DSM 6131
NCBI: GCA_000336635

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	86.10	no
125439	gram_stain	BacteriaNetⓘ	negative	91.40	no
125439	motility	BacteriaNetⓘ	no	50.00	no
125439	spore_formation	BacteriaNetⓘ	no	94.80	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Engineered CRISPR/Cas9 System for Transcriptional Gene Silencing in Arthrobacter Species Indicates Bacterioruberin is Indispensable for Growth at Low Temperatures.	Flegler A, Lipski A.	Curr Microbiol	10.1007/s00284-022-02887-5	2022
Metabolism	Deciphering Pathways for Carotenogenesis in Haloarchaea.	Giani M, Miralles-Robledillo JM, Peiro G, Pire C, Martinez-Espinosa RM.	Molecules	10.3390/molecules25051197	2020
Genetics	Conserved and lineage-specific hypothetical proteins may have played a central role in the rise and diversification of major archaeal groups.	Meheust R, Castelle CJ, Jaffe AL, Banfield JF.	BMC Biol	10.1186/s12915-022-01348-6	2022
Genetics	Ecological Trait-Based Digital Categorization of Microbial Genomes for Denitrification Potential.	Isokpehi RD, Kim Y, Krejci SE, Trivedi VD.	Microorganisms	10.3390/microorganisms12040791	2024
Enzymology	Discovery of bacteriorhodopsins in Haloarchaeal species isolated from Indian solar salterns: deciphering the role of the N-terminal residues in protein folding and functional expression.	Verma DK, Baral I, Kumar A, Prasad SE, Thakur KG.	Microb Biotechnol	10.1111/1751-7915.13359	2019
	Investigating the effects of simulated martian ultraviolet radiation on Halococcus dombrowskii and other extremely halophilic archaebacteria.	Fendrihan S, Berces A, Lammer H, Musso M, Ronto G, Polacsek TK, Holzinger A, Kolb C, Stan-Lotter H.	Astrobiology	10.1089/ast.2007.0234	2009
Metabolism	Dihydroxyacetone metabolism in Haloferax volcanii.	Ouellette M, Makkay AM, Papke RT.	Front Microbiol	10.3389/fmicb.2013.00376	2013
Metabolism	Identification and characterization of bifunctional proline racemase/hydroxyproline epimerase from archaea: discrimination of substrates and molecular evolution.	Watanabe S, Tanimoto Y, Nishiwaki H, Watanabe Y.	PLoS One	10.1371/journal.pone.0120349	2015
Genetics	Association between the dynamics of multiple replication origins and the evolution of multireplicon genome architecture in haloarchaea.	Wu Z, Yang H, Liu J, Wang L, Xiang H.	Genome Biol Evol	10.1093/gbe/evu219	2014
	Archaeal viruses multiply: temporal screening in a solar saltern.	Atanasova NS, Demina TA, Buivydas A, Bamford DH, Oksanen HM.	Viruses	10.3390/v7041902	2015
Phylogeny	Diverse antimicrobial interactions of halophilic archaea and bacteria extend over geographical distances and cross the domain barrier.	Atanasova NS, Pietila MK, Oksanen HM.	Microbiologyopen	10.1002/mbo3.115	2013
	Characterization of a family IV esterase from extremely halophilic archaeon Haloarcula japonica.	Kato H, Ambai S, Ikeda F, Abe K, Nakamura S, Yatsunami R.	Extremophiles	10.1007/s00792-024-01370-2	2024
	Halocin H4 is activated through cleavage by halolysin HlyR4.	Chen S, Dai Y, Ke J, Luo Y, Wang C, Hao Y, Zhang A, Han J, Xiang H.	Appl Environ Microbiol	10.1128/aem.02284-23	2024
Phylogeny	Temperature-dependent expression of different guanine-plus-cytosine content 16S rRNA genes in Haloarcula strains of the class Halobacteria.	Sato Y, Kimura H.	Antonie Van Leeuwenhoek	10.1007/s10482-018-1144-3	2019
Genetics	Production, characterization, and genomic insights of a human lectin-binding exopolysaccharide from Haloarcula japonica strain SST1.	Ghevondyan D, Hakobyan A, Margaryan A, Finore I, Cattaneo A, Chiodo F, Birkeland NK, Poli A, Panosyan H.	Sci Rep	10.1038/s41598-025-18462-4	2025
	Carotenoid characterization, fatty acid profiles, and antioxidant activities of haloarchaeal extracts.	Kesbic FI, Gultepe N.	J Basic Microbiol	10.1002/jobm.202300330	2024
Enzymology	Two Distinct Enzymes Have Both Phytoene Desaturase and 3,4-Desaturase Activities Involved in Carotenoid Biosynthesis by the Extremely Halophilic Archaeon Haloarcula japonica.	Yatsunami R, Ando A, Miyoko N, Yang Y, Takaichi S, Nakamura S.	Microbes Environ	10.1264/jsme2.me24004	2024
	Characterization of a GlgC homolog from extremely halophilic archaeon Haloarcula japonica.	Sueda R, Yoshida K, Onodera M, Fukui T, Yatsunami R, Nakamura S.	Biosci Biotechnol Biochem	10.1093/bbb/zbab050	2021
Phylogeny	Two newly established and mutually related subfamilies GH13_48 and GH13_49 of the alpha-amylase family GH13.	Marecek F, Terrapon N, Janecek S.	Appl Microbiol Biotechnol	10.1007/s00253-024-13251-x	2024
Phylogeny	Genomic insights on carotenoid synthesis by extremely halophilic archaea Haloarcula rubripromontorii BS2, Haloferax lucentense BBK2 and Halogeometricum borinquense E3 isolated from the solar salterns of India.	Nagar DN, Mani K, Braganca JM.	Sci Rep	10.1038/s41598-024-70149-4	2024
Metabolism	Pyrophosphate hydrolysis in the extremely halophilic archaeon Haloarcula japonica is catalyzed by a single enzyme with a broad ionic strength range.	Wakai S, Abe A, Fujii S, Nakasone K, Sambongi Y.	Extremophiles	10.1007/s00792-017-0917-3	2017
	First characterization of extremely halophilic 2-deoxy-D-ribose-5-phosphate aldolase.	Ohshida T, Hayashi J, Satomura T, Kawakami R, Ohshima T, Sakuraba H.	Protein Expr Purif	10.1016/j.pep.2016.05.009	2016
	Carotenoids from Halophilic Archaea: A Novel Approach to Improve Egg Quality and Cecal Microbiota in Laying Hens.	Dou X, Zhang G, Tang H, Chen X, Chen B, Mei Y, Jiao H, Ren M.	Animals (Basel)	10.3390/ani14233470	2024
	Characterization of Polyhydroxybutyrate, PHB, Synthesized by Newly Isolated Haloarchaea Halolamina spp.	Hagagy N, Saddiq AA, Tag HM, Selim S, AbdElgawad H, Martinez-Espinosa RM.	Molecules	10.3390/molecules27217366	2022
	Understanding the tolerance of halophilic archaea to stress landscapes.	Matarredona L, Zafrilla B, Camacho M, Bonete MJ, Esclapez J.	Environ Microbiol Rep	10.1111/1758-2229.70039	2024
	Biochemical Characterization of the Amylase Activity from the New Haloarchaeal Strain Haloarcula sp. HS Isolated in the Odiel Marshlands.	Gomez-Villegas P, Vigara J, Romero L, Gotor C, Raposo S, Goncalves B, Leon R.	Biology (Basel)	10.3390/biology10040337	2021
Metabolism	Gene analysis, expression, and characterization of an intracellular alpha-amylase from the extremely halophilic archaeon Haloarcula japonica.	Onodera M, Yatsunami R, Tsukimura W, Fukui T, Nakasone K, Takashina T, Nakamura S.	Biosci Biotechnol Biochem	10.1271/bbb.120693	2013
Genetics	The biosynthesis mechanism of bacterioruberin in halophilic archaea revealed by genome and transcriptome analysis.	Ma Y, Sun Z, Yang H, Xie W, Song M, Zhang B, Sui L.	Appl Environ Microbiol	10.1128/aem.00540-24	2024
	Identification of carotenoids from the extremely halophilic archaeon Haloarcula japonica.	Yatsunami R, Ando A, Yang Y, Takaichi S, Kohno M, Matsumura Y, Ikeda H, Fukui T, Nakasone K, Fujita N, Sekine M, Takashina T, Nakamura S.	Front Microbiol	10.3389/fmicb.2014.00100	2014
	Carotenoids as a Protection Mechanism against Oxidative Stress in Haloferax mediterranei.	Giani M, Martinez-Espinosa RM.	Antioxidants (Basel)	10.3390/antiox9111060	2020
	Bacterioruberin: Biosynthesis, Antioxidant Activity, and Therapeutic Applications in Cancer and Immune Pathologies.	Giani M, Pire C, Martinez-Espinosa RM.	Mar Drugs	10.3390/md22040167	2024
Enzymology	In Vitro One-Pot 3-Hydroxypropanal Production from Cheap C1 and C2 Compounds.	Ju SB, Seo MJ, Yeom SJ.	Int J Mol Sci	10.3390/ijms23073990	2022
Metabolism	Division plane placement in pleomorphic archaea is dynamically coupled to cell shape.	Walsh JC, Angstmann CN, Bisson-Filho AW, Garner EC, Duggin IG, Curmi PMG.	Mol Microbiol	10.1111/mmi.14316	2019
Metabolism	Complete biosynthetic pathway of the C50 carotenoid bacterioruberin from lycopene in the extremely halophilic archaeon Haloarcula japonica.	Yang Y, Yatsunami R, Ando A, Miyoko N, Fukui T, Takaichi S, Nakamura S.	J Bacteriol	10.1128/jb.02523-14	2015
Phylogeny	Microbial Diversity Biased Estimation Caused by Intragenomic Heterogeneity and Interspecific Conservation of 16S rRNA Genes.	Pan P, Gu Y, Sun DL, Wu QL, Zhou NY.	Appl Environ Microbiol	10.1128/aem.02108-22	2023
Genetics	Isolation and Taxonomic Characterization of Novel Haloarchaeal Isolates From Indian Solar Saltern: A Brief Review on Distribution of Bacteriorhodopsins and V-Type ATPases in Haloarchaea.	Verma DK, Chaudhary C, Singh L, Sidhu C, Siddhardha B, Prasad SE, Thakur KG.	Front Microbiol	10.3389/fmicb.2020.554927	2020
Metabolism	Haloferax mediterranei Cells as C50 Carotenoid Factories.	Giani M, Montero-Lobato Z, Garbayo I, Vilchez C, Vega JM, Martinez-Espinosa RM.	Mar Drugs	10.3390/md19020100	2021
	Production of Poly(3-Hydroxybutyrate) by Haloarcula, Halorubrum, and Natrinema Haloarchaeal Genera Using Starch as a Carbon Source.	Karray F, Ben Abdallah M, Baccar N, Zaghden H, Sayadi S.	Archaea	10.1155/2021/8888712	2021
	Optimization of Growth and Carotenoid Production by Haloferax mediterranei Using Response Surface Methodology.	Montero-Lobato Z, Ramos-Merchante A, Fuentes JL, Sayago A, Fernandez-Recamales A, Martinez-Espinosa RM, Vega JM, Vilchez C, Garbayo I.	Mar Drugs	10.3390/md16100372	2018
	The cell biology of archaea.	van Wolferen M, Pulschen AA, Baum B, Gribaldo S, Albers SV.	Nat Microbiol	10.1038/s41564-022-01215-8	2022
	Analysis of Carotenoids in Haloarchaea Species from Atacama Saline Lakes by High Resolution UHPLC-Q-Orbitrap-Mass Spectrometry: Antioxidant Potential and Biological Effect on Cell Viability.	Lizama C, Romero-Parra J, Andrade D, Riveros F, Borquez J, Ahmed S, Venegas-Salas L, Cabalin C, Simirgiotis MJ.	Antioxidants (Basel)	10.3390/antiox10081230	2021
	Haloterrigena sp. Strain SGH1, a Bacterioruberin-Rich, Perchlorate-Tolerant Halophilic Archaeon Isolated From Halite Microbial Communities, Atacama Desert, Chile.	Flores N, Hoyos S, Venegas M, Galetovic A, Zuniga LM, Fabrega F, Paredes B, Salazar-Ardiles C, Vilo C, Ascaso C, Wierzchos J, Souza-Egipsy V, Araya JE, Batista-Garcia RA, Gomez-Silva B.	Front Microbiol	10.3389/fmicb.2020.00324	2020
	Molecular cloning of transducer gene hjtB from extremely halophilic archaeon Haloarcula japonica.	Kosaka T, Ozawa T, Yatsunami R, Fukui T, Nakamura S.	Nucleic Acids Symp Ser (Oxf)	10.1093/nass/49.1.315	2005
Metabolism	Constant enthalpy change value during pyrophosphate hydrolysis within the physiological limits of NaCl.	Wakai S, Kidokoro S, Masaki K, Nakasone K, Sambongi Y.	J Biol Chem	10.1074/jbc.m113.502963	2013
	The squalene route to C30 carotenoid biosynthesis and the origins of carotenoid biosynthetic pathways.	Santana-Molina C, Henriques V, Hornero-Mendez D, Devos DP, Rivas-Marin E.	Proc Natl Acad Sci U S A	10.1073/pnas.2210081119	2022
	Revisiting evolutionary trajectories and the organization of the Pleolipoviridae family.	Alarcon-Schumacher T, Lucking D, Erdmann S.	PLoS Genet	10.1371/journal.pgen.1010998	2023
	Functional Insights of Salinity Stress-Related Pathways in Metagenome-Resolved Methanothrix Genomes.	Gagliano MC, Sampara P, Plugge CM, Temmink H, Sudmalis D, Ziels RM.	Appl Environ Microbiol	10.1128/aem.02449-21	2022
Metabolism	Genetically engineered biosynthetic pathways for nonnatural C₆₀ carotenoids using C₅-elongases and C₅₀-cyclases in Escherichia coli.	Li L, Furubayashi M, Wang S, Maoka T, Kawai-Noma S, Saito K, Umeno D.	Sci Rep	10.1038/s41598-019-39289-w	2019
Enzymology	Cloning and characterization of a chitinase from Thermobifida fusca reveals Tfu_0580 as a thermostable and acidic endochitinase.	Yan Q, Fong SS.	Biotechnol Rep (Amst)	10.1016/j.btre.2018.e00274	2018
	Complete atomic structure of a native archaeal cell surface.	von Kugelgen A, Alva V, Bharat TAM.	Cell Rep	10.1016/j.celrep.2021.110052	2021
Stress	Environmental factors influence the Haloferax volcanii S-layer protein structure.	Rodrigues-Oliveira T, Souza AA, Kruger R, Schuster B, Maria de Freitas S, Kyaw CM.	PLoS One	10.1371/journal.pone.0216863	2019
	Structural Diversity of the Membrane Core Lipids of Extreme Halophiles.	Morita M, Yamauchi N, Eguchi T, Kakinuma K.	Biosci Biotechnol Biochem	10.1271/bbb.62.596	1998
Pathogenicity	Isolation of a virus causing a chronic infection in the archaeal model organism Haloferax volcanii reveals antiviral activities of a provirus.	Alarcon-Schumacher T, Naor A, Gophna U, Erdmann S.	Proc Natl Acad Sci U S A	10.1073/pnas.2205037119	2022
	Distribution and Niche Separation of Planktonic Microbial Communities in the Water Columns from the Surface to the Hadal Waters of the Japan Trench under the Eutrophic Ocean.	Nunoura T, Hirai M, Yoshida-Takashima Y, Nishizawa M, Kawagucci S, Yokokawa T, Miyazaki J, Koide O, Makita H, Takaki Y, Sunamura M, Takai K.	Front Microbiol	10.3389/fmicb.2016.01261	2016
Genetics	Biochemical and Taxonomic Characterization of Novel Haloarchaeal Strains and Purification of the Recombinant Halotolerant alpha-Amylase Discovered in the Isolate.	Verma DK, Vasudeva G, Sidhu C, Pinnaka AK, Prasad SE, Thakur KG.	Front Microbiol	10.3389/fmicb.2020.02082	2020
	Comparing RNA secondary structures using a relaxed base-pair score.	Agius P, Bennett KP, Zuker M.	RNA	10.1261/rna.903510	2010
	Sec-Dependent Secretion of Subtilase SptE in Haloarchaea Facilitates Its Proper Folding and Heterocatalytic Processing by Halolysin SptA Extracellularly.	Mei S, Li M, Sun Y, Deng X, Chen N, Liu Y, Yin J, Luo H, Wu Y, He D, Gan F, Tang B, Tang XF.	Appl Environ Microbiol	10.1128/aem.00246-22	2022
	[Interaction of halobacteria and cyanobacteria in a halophilic cyanobacterial community].	Zviagintseva IS, Gerasimenko LM, Kostrikina NA, Bulygina ES, Zavarzin GA.	Mikrobiologiia		1995
	A traditional Japanese-style salt field is a niche for haloarchaeal strains that can survive in 0.5% salt solution.	Fukushima T, Usami R, Kamekura M.	Saline Syst	10.1186/1746-1448-3-2	2007
	Halolysin R4 of Haloferax mediterranei confers its host antagonistic and defensive activities.	Chen S, Sun S, Wang R, Feng H, Xiang H.	Appl Environ Microbiol	10.1128/aem.02889-20	2021
Genetics	Open Issues for Protein Function Assignment in Haloferax volcanii and Other Halophilic Archaea.	Pfeiffer F, Dyall-Smith M.	Genes (Basel)	10.3390/genes12070963	2021
Metabolism	Comparative genomic analysis of the flagellin glycosylation island of the Gram-positive thermophile Geobacillus.	De Maayer P, Cowan DA.	BMC Genomics	10.1186/s12864-016-3273-2	2016
Metabolism	Structural and Functional Studies of a Newly Grouped Haloquadratum walsbyi Bacteriorhodopsin Reveal the Acid-resistant Light-driven Proton Pumping Activity.	Hsu MF, Fu HY, Cai CJ, Yi HP, Yang CS, Wang AH.	J Biol Chem	10.1074/jbc.m115.685065	2015
Lipids	The catalytic and structural basis of archaeal glycerophospholipid biosynthesis.	de Kok NAW, Driessen AJM.	Extremophiles	10.1007/s00792-022-01277-w	2022
Metabolism	The potential biotechnological applications of the exopolysaccharide produced by the halophilic bacterium Halomonas almeriensis.	Llamas I, Amjres H, Mata JA, Quesada E, Bejar V.	Molecules	10.3390/molecules17067103	2012
	Raman spectroscopy as a potentialmethod for the detection of extremely halophilic archaea embedded in halite in terrestrial and possibly extraterrestrial samples.	Fendrihan S, Musso M, Stan-Lotter H.	J Raman Spectrosc	10.1002/jrs.2357	2009
	Isoprenoid Pyrophosphate-Dependent Transcriptional Regulation of Carotenogenesis in Corynebacterium glutamicum.	Henke NA, Heider SAE, Hannibal S, Wendisch VF, Peters-Wendisch P.	Front Microbiol	10.3389/fmicb.2017.00633	2017
Phylogeny	Archaeal Haloarcula californiae Icosahedral Virus 1 Highlights Conserved Elements in Icosahedral Membrane-Containing DNA Viruses from Extreme Environments.	Demina TA, Pietila MK, Svirskaite J, Ravantti JJ, Atanasova NS, Bamford DH, Oksanen HM.	mBio	10.1128/mbio.00699-16	2016
	Evolution of rhodopsin ion pumps in haloarchaea.	Sharma AK, Walsh DA, Bapteste E, Rodriguez-Valera F, Ford Doolittle W, Papke RT.	BMC Evol Biol	10.1186/1471-2148-7-79	2007
Metabolism	Isolation and metabolic characteristics of previously uncultured members of the order aquificales in a subsurface gold mine.	Takai K, Hirayama H, Sakihama Y, Inagaki F, Yamato Y, Horikoshi K.	Appl Environ Microbiol	10.1128/aem.68.6.3046-3054.2002	2002
	Identification of Sinorhizobium meliloti early symbiotic genes by use of a positive functional screen.	Zhang XS, Cheng HP.	Appl Environ Microbiol	10.1128/aem.72.4.2738-2748.2006	2006
Phylogeny	Distribution of archaea in a black smoker chimney structure.	Takai K, Komatsu T, Inagaki F, Horikoshi K.	Appl Environ Microbiol	10.1128/aem.67.8.3618-3629.2001	2001
	S-layer nanoglycobiology of bacteria.	Messner P, Steiner K, Zarschler K, Schaffer C.	Carbohydr Res	10.1016/j.carres.2007.12.025	2008
Enzymology	Characterization of 3-isopropylmalate dehydrogenase from extremely halophilic archaeon Haloarcula japonica.	Nagaoka S, Sugiyama N, Yatsunami R, Nakamura S	Biosci Biotechnol Biochem	10.1093/bbb/zbab122	2021
Enzymology	Halophilic mechanism of the enzymatic function of a moderately halophilic dihydrofolate reductase from Haloarcula japonica strain TR-1.	Miyashita Y, Ohmae E, Ikura T, Nakasone K, Katayanagi K	Extremophiles	10.1007/s00792-017-0928-0	2017
Enzymology	Effects of salt on the structure, stability, and function of a halophilic dihydrofolate reductase from a hyperhalophilic archaeon, Haloarcula japonica strain TR-1.	Miyashita Y, Ohmae E, Nakasone K, Katayanagi K	Extremophiles	10.1007/s00792-015-0732-7	2015
Phylogeny	Isolation of crtI homolog from extremely halophilic archaeon Haloarcula japonica strain TR-1.	Yatsunami R, Takaichi S, Nakamura S	Nucleic Acids Symp Ser (Oxf)	10.1093/nass/48.1.193	2004
Enzymology	Molecular cloning of transducer genes hjtA and hjtC from extremely halophilic archaeon Haloarcula japonica.	Kosaka T, Ozawa T, Yatsunami R, Nakamura S	Nucleic Acids Symp Ser (Oxf)	10.1093/nass/48.1.169	2004
Genetics	Gene cloning, expression and partial characterization of cell division protein FtsZ1 from extremely halophilic archaeon Haloarcula japonica strain TR-1.	Ozawa K, Harashina T, Yatsunami R, Nakamura S	Extremophiles	10.1007/s00792-005-0443-6	2005
Enzymology	Gene cloning of ftsZ1 homolog from extremely halophilic archaeon Haloarcula japonica.	Ozawa K, Yatsunami R, Nakamura S	Nucleic Acids Res Suppl	10.1093/nass/3.1.313	2003
Enzymology	A brp homolog of Haloarcula japonica: gene cloning and transcriptional analysis.	Yatsunami R, Iwamoto M, Ito S, Nakamura S	Nucleic Acids Res Suppl	10.1093/nass/3.1.267	2003
Enzymology	Cloning and sequencing of ftsZ homolog from extremely halophilic archaeon Haloarcula japonica strain TR-1.	Kazumichi O, Yatsunami R, Nakamura S	Nucleic Acids Symp Ser	10.1093/nass/44.1.155	2000
Enzymology	The gene encoding a novel halorhodopsin-like protein of extremely halophilic archaeon Haloarcula japonica strain TR-1.	Yatsunami R, Aono S, Nakamura S	Nucleic Acids Symp Ser	10.1093/nass/44.1.1	2000
Enzymology	Gene clusters encoding ATP synthase of Haloarcula japonica strain TR-1.	Yatsunami R, Iwamoto M, Ihara K, Nakamura S	Nucleic Acids Res Suppl	10.1093/nass/1.1.51	2001
Enzymology	Purification and characterization of a ferredoxin from Haloarcula japonica strain TR-1.	Sugimori D, Ichimata T, Ikeda A, Nakamura S	Biometals	10.1023/a:1009260220682	2000
Enzymology	A novel bacteriorhodopsin-like protein from Haloarcula japonica strain TR-1: gene cloning, sequencing, and transcript analysis.	Yatsunami R, Kawakami T, Ohtani H, Nakamura S	Extremophiles	10.1007/pl00010710	2000
Enzymology	Molecular cloning of A1-ATPase gene from extremely halophilic archaeon Haloarcula japonica strain TR-1.	Yatsunami R, Iwamoto M, Ihara K, Nakamura S	Nucleic Acids Symp Ser	10.1093/nass/42.1.75	1999
Cultivation	Transcriptional regulation of cruxrhodopsin gene from extremely halophilic archaeon Haloarcula japonica strain TR-1.	Yatsunami R, Kawakami T, Ohtani H, Nakamura S	Nucleic Acids Symp Ser	10.1093/nass/42.1.73	1999
Enzymology	Cloning and sequencing of the gene encoding the cell surface glycoprotein of Haloarcula japonica strain TR-1.	Wakai H, Nakamura S, Kawasaki H, Takada K, Mizutani S, Aono R, Horikoshi K	Extremophiles	10.1007/s007920050012	1997
Enzymology	Primary structure of the novel bacterial rhodopsin from extremely halophilic archaeon Haloarcula japonica strain TR-1.	Yatsunami R, Kawakami T, Ohtani H, Nakamura S	Nucleic Acids Symp Ser		1997
Enzymology	Molecular cloning of the gene encoding a 2Fe-2S ferredoxin from extremely halophilic archaeon Haloarcula japonica strain TR-1.	Ikeda A, Ichimata T, Sugimori D, Nakamura S	Nucleic Acids Symp Ser		1997
Enzymology	Structure and heterologous expression of the gene encoding the cell surface glycoprotein from Haloarcula japonica strain TR-1.	Wakai H, Takada K, Nakamura S, Horikoshi K	Nucleic Acids Symp Ser		1995
Phylogeny	Haloarcula mannanilytica sp. nov., a galactomannan-degrading haloarchaeon isolated from commercial salt.	Enomoto S, Shimane Y, Ihara K, Kamekura M, Itoh T, Ohkuma M, Takahashi-Ando N, Fukushima Y, Yoshida Y, Usami R, Takai K, Minegishi H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004535	2020

References

#2497	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6131
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Haloarcula japonica (DSM 6131, ATCC 49778, JCM 7785)

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