Name: Haloarcula hispanica Y-27
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5900

Type strain:

Species: Haloarcula hispanica

Strain Designation: Y-27, Y.27

Culture col. no.: DSM 4426, ATCC 33960, NCMB 2187, JCM 8911, CCM 3601, IAM 13179, NBRC 102182, NCIMB 2187, VKM B-1755

Strain history: IAM 13179 <-- F. Rodriguez-Valera Y27.

NCBI tax ID(s): 634497 (strain), 51589 (species)

SI-ID 125934

ATCC 33960, DSM 4426, NCMB 2187, JCM 8911, CCM 3601, IAM 13179, NCIMB 2187, VKM B-1755, NBRC 102182, CGMCC 1.2049

Special Collections

DSMZ
JCM

Section

Haloarcula hispanica Y-27 is a Gram-negative archaeon that was isolated from solar saltern.

Gram-negative
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Haloarculaceae*
	Genus	*Haloarcula*
	Species	**Haloarcula hispanica**
	Full Scientific Name (LPSN)	Haloarcula hispanica Juez et al. 1986

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1665]

Culture medium

HALOBACTERIA MEDIUM (DSMZ Medium 372)

[Ref.: #1665]

Culture medium growth

[Ref.: #1665]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1665]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1665]			growth	37 °C
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1665]	Sample type/isolated from	solar saltern
[Ref.: #1665]	Geographic location (country and/or sea, region)	Alicante
[Ref.: #1665]	Country	Spain
[Ref.: #1665]	Country ISO 3 Code	ESP
[Ref.: #1665]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Solar saltern near Alicante
[Ref.: #67770]	Country	Spain
[Ref.: #67770]	Country ISO 3 Code	ESP
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Condition

#Saline

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1665]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #124043]	Haloarcula hispanica ATCC 33960 partial 16S rRNA gene, strain JC583, isolate V-224	LT986728	640	GenBank ENA	634497 tax ID	*
[Ref.: #124043]	Haloarcula hispanica ATCC 33960 partial 16S rRNA gene, strain JC585, isolate V-226	LT986730	682	GenBank ENA	634497 tax ID	*
[Ref.: #20218]	Haloarcula hispanica gene for 16S rRNA, partial sequence, rrnA operon	AB090167	1472	GenBank ENA	634497 tax ID	*
[Ref.: #20218]	Haloarcula hispanica gene for 16S rRNA, partial sequence, rrnB operon	AB090168	1472	GenBank ENA	634497 tax ID	*
[Ref.: #20218]	Haloarcula hispanica strain ATCC 33960 16S ribosomal RNA gene, complete sequence	U68541	1469	GenBank ENA	634497 tax ID	*
[Ref.: #20218]	Haloarcula hispanica strain CGMCC1.2049 16S ribosomal RNA (rrnA) gene, complete sequence	EF645682	1472	GenBank ENA	51589 tax ID	*
[Ref.: #20218]	Haloarcula hispanica strain CGMCC1.2049 16S ribosomal RNA (rrnB) gene, complete sequence	EF645683	1472	GenBank ENA	51589 tax ID	*
[Ref.: #20218]	Haloarcula hispanica gene for 16S ribosomal RNA, partial sequence, strain: JCM 8911	AB355985	1472	GenBank ENA	634497 tax ID	*
[Ref.: #20218]	Haloarcula hispanica gene for 16S rRNA, complete sequence, strain: JCM 8911	AB663352	1472	GenBank ENA	634497 tax ID	*
[Ref.: #124043]	Haloarcula hispanica gene for 16S ribosomal RNA, partial sequence, strain: JCM8911, note: rrsA.	LC085245	1405	GenBank ENA	51589 tax ID	*
[Ref.: #124043]	Haloarcula hispanica gene for 16S ribosomal RNA, partial sequence, strain: JCM8911, note: rrsB.	LC085246	1405	GenBank ENA	51589 tax ID	*
[Ref.: #124043]	Haloarcula hispanica gene for 16S ribosomal RNA, partial sequence, strain: JCM8911, note: rrsC.	LC085247	1405	GenBank ENA	51589 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Haloarcula hispanica ATCC 33960 CGMCC 1.2049	GCA_000223905	complete	GenBank ENA	634497 tax ID	*
[Ref.: #66792]	Haloarcula hispanica ATCC 33960 strain CGMCC 1.2049	634497.20	plasmid	PATRIC	634497 tax ID	*
[Ref.: #66792]	Haloarcula hispanica ATCC 33960	634497.12	complete	PATRIC	634497 tax ID	*

[Ref.: #1665]	GC-content	62.7 mol%
[Ref.: #67770]	GC-content	61.8 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	62.7 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Haloarcula hispanica ATCC 33960 CGMCC 1.2049 NCBI: GCA_000223905.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	77.496	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	83.134	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	78.587	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	82.131	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	80.948	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	83	no

Availability in culture collections External links

[Ref.: #1665]

Culture collection no.

DSM 4426, ATCC 33960, NCMB 2187, JCM 8911, CCM 3601, IAM 13179, NBRC 102182, NCIMB 2187, VKM B-1755

[Ref.: #75380]

SI-ID 125934

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Genetics	Genome Sequence of Hardyhisp2, a Gammapleolipovirus Infecting Haloarcula hispanica.	Dyall-Smith M, Pfeiffer F, Chiang PW, Tang SL	Microbiol Resour Announc	10.1128/MRA.00226-21	2021	*
Phylogeny	Haloarcula mannanilytica sp. nov., a galactomannan-degrading haloarchaeon isolated from commercial salt.	Enomoto S, Shimane Y, Ihara K, Kamekura M, Itoh T, Ohkuma M, Takahashi-Ando N, Fukushima Y, Yoshida Y, Usami R, Takai K, Minegishi H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004535	2020	*
Genetics	Complete Genome Sequence of the Extremely Halophilic Archaeon Haloarcula hispanica Strain N601.	Ding JY, Chiang PW, Hong MJ, Dyall-Smith M, Tang SL	Genome Announc	10.1128/genomeA.00178-14	2014	*
Enzymology	New food for an old mouth: new enzyme for an ancient archaea.	Oztetik E, Cakir A	Enzyme Microb Technol	10.1016/j.enzmictec.2013.12.004	2013	*
Metabolism	Construction of a novel shuttle vector based on an RCR-plasmid from a haloalkaliphilic archaeon and transformation into other haloarchaea.	Zhou M, Xiang H, Sun C, Tan H	Biotechnol Lett	10.1023/B:BILE.0000035493.21986.20	2004	*
Phylogeny	Phylogenetic analyses of some extremely halophilic archaea isolated from Dead Sea water, determined on the basis of their 16S rRNA sequences.	Arahal DR, Dewhirst FE, Paster BJ, Volcani BE, Ventosa A	Appl Environ Microbiol	10.1128/aem.62.10.3779-3786.1996	1996	*
	Novel Insights Into the Sulfated Glucuronic Acid-Based Anti-SARS-CoV-2 Mechanism of Exopolysaccharides From Halophilic Archaeon Haloarcula hispanica.	Xu Y, Li Y, You X, Pei C, Wang Z, Jiao S, Zhao X, Lin X, Lu Y, Jin C, Gao GF, Li J, Wang Q, Du Y	Front Chem	10.3389/fchem.2022.871509	2022	*
	An Acidic Exopolysaccharide from Haloarcula hispanica ATCC33960 and Two Genes Responsible for Its Synthesis.	Lu Y, Lu H, Wang S, Han J, Xiang H, Jin C	Archaea	10.1155/2017/5842958	2017	*

References

#1665

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4426

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75380

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID125934.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Haloarcula hispanica ATCC 33960 CGMCC 1.2049

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