Haloterrigena turkmenica 4 is a mesophilic, Gram-negative, oval-shaped prokaryote of the family Natrialbaceae.
Gram-negative oval-shaped mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Methanobacteriati |
| Phylum Methanobacteriota |
| Class Halobacteria |
| Order Halobacteriales |
| Family Natrialbaceae |
| Genus Haloterrigena |
| Species Haloterrigena turkmenica |
| Full scientific name Haloterrigena turkmenica (Zvyagintseva and Tarasov 1989) Ventosa et al. 1999 |
| Synonyms (1) |
| BacDive ID | Other strains from Haloterrigena turkmenica (1) | Type strain |
|---|---|---|
| 166056 | H. turkmenica JCM 9743, NRC 2856 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 2088 | HALOBACTERIA MEDIUM (DSMZ Medium 372) | Medium recipe at MediaDive | Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water | ||
| 38625 | MEDIUM 305 - for Halorubrum trapanicum | Distilled water make up to (1000.000 ml);Sodium chloride (250.000 g);Potassium chloride (2.000 g);ManganeseII chloride tetrahydrate (0.360 mg);Magnesium sulphate heptahydrate (20.000 g);Agar (20.000 g);Yeast extract (10.000 g);Ferrous chloride tetrahydrat | |||
| 123698 | CIP Medium 204 | Medium recipe at CIP |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | aerobe | 95.7 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 123698 | 16947 ChEBI | citrate | - | carbon source | |
| 123698 | 4853 ChEBI | esculin | - | hydrolysis | |
| 123698 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 123698 | 15792 ChEBI | malonate | - | assimilation | |
| 123698 | 17632 ChEBI | nitrate | + | builds gas from | |
| 123698 | 17632 ChEBI | nitrate | + | reduction | |
| 123698 | 16301 ChEBI | nitrite | + | builds gas from | |
| 123698 | 16301 ChEBI | nitrite | - | reduction |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | - | 3.1.3.2 | from API zym |
| 123698 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 123698 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 123698 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 123698 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 123698 | gelatinase | - | ||
| 68382 | leucine arylamidase | - | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 123698 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 123698 | ornithine decarboxylase | - | 4.1.1.17 | |
| 123698 | oxidase | + | ||
| 123698 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 123698 | tryptophan deaminase | - | ||
| 123698 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | aerobactin biosynthesis | 100 | 1 of 1 | ||
| 66794 | phenylacetate degradation (aerobic) | 100 | 5 of 5 | ||
| 66794 | lipoate biosynthesis | 100 | 5 of 5 | ||
| 66794 | denitrification | 100 | 2 of 2 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | ||
| 66794 | glycine betaine biosynthesis | 100 | 5 of 5 | ||
| 66794 | phenylmercury acetate degradation | 100 | 2 of 2 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | factor 420 biosynthesis | 100 | 5 of 5 | ||
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | L-lactaldehyde degradation | 100 | 3 of 3 | ||
| 66794 | hydrogen production | 100 | 5 of 5 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | gluconeogenesis | 100 | 8 of 8 | ||
| 66794 | enterobactin biosynthesis | 100 | 3 of 3 | ||
| 66794 | isoleucine metabolism | 100 | 8 of 8 | ||
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | ||
| 66794 | molybdenum cofactor biosynthesis | 100 | 9 of 9 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | ethanol fermentation | 100 | 2 of 2 | ||
| 66794 | flavin biosynthesis | 93.33 | 14 of 15 | ||
| 66794 | vitamin B1 metabolism | 92.31 | 12 of 13 | ||
| 66794 | threonine metabolism | 90 | 9 of 10 | ||
| 66794 | Entner Doudoroff pathway | 90 | 9 of 10 | ||
| 66794 | aspartate and asparagine metabolism | 88.89 | 8 of 9 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | valine metabolism | 88.89 | 8 of 9 | ||
| 66794 | C4 and CAM-carbon fixation | 87.5 | 7 of 8 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 87.5 | 7 of 8 | ||
| 66794 | glutamate and glutamine metabolism | 85.71 | 24 of 28 | ||
| 66794 | heme metabolism | 85.71 | 12 of 14 | ||
| 66794 | ubiquinone biosynthesis | 85.71 | 6 of 7 | ||
| 66794 | phenylalanine metabolism | 84.62 | 11 of 13 | ||
| 66794 | leucine metabolism | 84.62 | 11 of 13 | ||
| 66794 | lipid metabolism | 83.87 | 26 of 31 | ||
| 66794 | pantothenate biosynthesis | 83.33 | 5 of 6 | ||
| 66794 | alanine metabolism | 82.76 | 24 of 29 | ||
| 66794 | proline metabolism | 81.82 | 9 of 11 | ||
| 66794 | vitamin K metabolism | 80 | 4 of 5 | ||
| 66794 | glycogen metabolism | 80 | 4 of 5 | ||
| 66794 | ethylmalonyl-CoA pathway | 80 | 4 of 5 | ||
| 66794 | degradation of sugar acids | 80 | 20 of 25 | ||
| 66794 | cellulose degradation | 80 | 4 of 5 | ||
| 66794 | citric acid cycle | 78.57 | 11 of 14 | ||
| 66794 | CO2 fixation in Crenarchaeota | 77.78 | 7 of 9 | ||
| 66794 | serine metabolism | 77.78 | 7 of 9 | ||
| 66794 | vitamin B12 metabolism | 76.47 | 26 of 34 | ||
| 66794 | pyrimidine metabolism | 75.56 | 34 of 45 | ||
| 66794 | acetate fermentation | 75 | 3 of 4 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | biotin biosynthesis | 75 | 3 of 4 | ||
| 66794 | ketogluconate metabolism | 75 | 6 of 8 | ||
| 66794 | purine metabolism | 74.47 | 70 of 94 | ||
| 66794 | methionine metabolism | 73.08 | 19 of 26 | ||
| 66794 | pentose phosphate pathway | 72.73 | 8 of 11 | ||
| 66794 | NAD metabolism | 72.22 | 13 of 18 | ||
| 66794 | tetrahydrofolate metabolism | 71.43 | 10 of 14 | ||
| 66794 | photosynthesis | 71.43 | 10 of 14 | ||
| 66794 | cardiolipin biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | reductive acetyl coenzyme A pathway | 71.43 | 5 of 7 | ||
| 66794 | propanol degradation | 71.43 | 5 of 7 | ||
| 66794 | glycolysis | 70.59 | 12 of 17 | ||
| 66794 | propionate fermentation | 70 | 7 of 10 | ||
| 66794 | histidine metabolism | 68.97 | 20 of 29 | ||
| 66794 | non-pathway related | 68.42 | 26 of 38 | ||
| 66794 | cyanate degradation | 66.67 | 2 of 3 | ||
| 66794 | glycolate and glyoxylate degradation | 66.67 | 4 of 6 | ||
| 66794 | nitrate assimilation | 66.67 | 6 of 9 | ||
| 66794 | methane metabolism | 66.67 | 2 of 3 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | d-mannose degradation | 66.67 | 6 of 9 | ||
| 66794 | selenocysteine biosynthesis | 66.67 | 4 of 6 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | arginine metabolism | 66.67 | 16 of 24 | ||
| 66794 | oxidative phosphorylation | 64.84 | 59 of 91 | ||
| 66794 | d-xylose degradation | 63.64 | 7 of 11 | ||
| 66794 | tryptophan metabolism | 63.16 | 24 of 38 | ||
| 66794 | urea cycle | 61.54 | 8 of 13 | ||
| 66794 | cysteine metabolism | 61.11 | 11 of 18 | ||
| 66794 | myo-inositol biosynthesis | 60 | 6 of 10 | ||
| 66794 | creatinine degradation | 60 | 3 of 5 | ||
| 66794 | starch degradation | 60 | 6 of 10 | ||
| 66794 | 3-chlorocatechol degradation | 60 | 3 of 5 | ||
| 66794 | 4-hydroxyphenylacetate degradation | 60 | 6 of 10 | ||
| 66794 | gallate degradation | 60 | 3 of 5 | ||
| 66794 | glutathione metabolism | 57.14 | 8 of 14 | ||
| 66794 | phenol degradation | 55 | 11 of 20 | ||
| 66794 | lysine metabolism | 54.76 | 23 of 42 | ||
| 66794 | cholesterol biosynthesis | 54.55 | 6 of 11 | ||
| 66794 | metabolism of disaccharids | 54.55 | 6 of 11 | ||
| 66794 | sulfate reduction | 53.85 | 7 of 13 | ||
| 66794 | aminopropanol phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | kanosamine biosynthesis II | 50 | 1 of 2 | ||
| 66794 | degradation of sugar alcohols | 50 | 8 of 16 | ||
| 66794 | ribulose monophosphate pathway | 50 | 1 of 2 | ||
| 66794 | coenzyme M biosynthesis | 50 | 5 of 10 | ||
| 66794 | sulfopterin metabolism | 50 | 2 of 4 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 50 | 1 of 2 | ||
| 66794 | androgen and estrogen metabolism | 50 | 8 of 16 | ||
| 66794 | cyclohexanol degradation | 50 | 2 of 4 | ||
| 66794 | lactate fermentation | 50 | 2 of 4 | ||
| 66794 | carotenoid biosynthesis | 50 | 11 of 22 | ||
| 66794 | vitamin E metabolism | 50 | 2 of 4 | ||
| 66794 | glycine metabolism | 50 | 5 of 10 | ||
| 66794 | degradation of hexoses | 50 | 9 of 18 | ||
| 66794 | resorcinol degradation | 50 | 1 of 2 | ||
| 66794 | methanogenesis from CO2 | 50 | 6 of 12 | ||
| 66794 | tyrosine metabolism | 50 | 7 of 14 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 50 | 6 of 12 | ||
| 66794 | 4-hydroxymandelate degradation | 44.44 | 4 of 9 | ||
| 66794 | mevalonate metabolism | 42.86 | 3 of 7 | ||
| 66794 | degradation of pentoses | 42.86 | 12 of 28 | ||
| 66794 | isoprenoid biosynthesis | 42.31 | 11 of 26 | ||
| 66794 | ascorbate metabolism | 40.91 | 9 of 22 | ||
| 66794 | bacilysin biosynthesis | 40 | 2 of 5 | ||
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | ||
| 66794 | arachidonic acid metabolism | 38.89 | 7 of 18 | ||
| 66794 | phenylpropanoid biosynthesis | 38.46 | 5 of 13 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 38.46 | 5 of 13 | ||
| 66794 | dTDPLrhamnose biosynthesis | 37.5 | 3 of 8 | ||
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 36.36 | 4 of 11 | ||
| 66794 | bile acid biosynthesis, neutral pathway | 35.29 | 6 of 17 | ||
| 66794 | polyamine pathway | 34.78 | 8 of 23 | ||
| 66794 | 3-phenylpropionate degradation | 33.33 | 5 of 15 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | lipid A biosynthesis | 33.33 | 3 of 9 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | sulfoquinovose degradation | 33.33 | 1 of 3 | ||
| 66794 | allantoin degradation | 33.33 | 3 of 9 | ||
| 66794 | aclacinomycin biosynthesis | 28.57 | 2 of 7 | ||
| 66794 | vitamin B6 metabolism | 27.27 | 3 of 11 | ||
| 66794 | ppGpp biosynthesis | 25 | 1 of 4 | ||
| 66794 | butanoate fermentation | 25 | 1 of 4 | ||
| 66794 | catecholamine biosynthesis | 25 | 1 of 4 | ||
| 66794 | alginate biosynthesis | 25 | 1 of 4 | ||
| 66794 | CMP-KDO biosynthesis | 25 | 1 of 4 | ||
| 66794 | toluene degradation | 25 | 1 of 4 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM2532v1 assembly for Haloterrigena turkmenica DSM 5511 | complete | 543526 | 97.36 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 87.60 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 52.30 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 85.40 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 95.70 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 77.27 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 85.01 | no |
| 125438 | aerobic | aerobicⓘ | yes | 77.60 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 81.94 | no |
| 125438 | thermophilic | thermophileⓘ | no | 81.26 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 92.50 | no |
| Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|
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| Bipyrimidine Signatures as a Photoprotective Genome Strategy in G + C-rich Halophilic Archaea. | Jones DL, Baxter BK. | Life (Basel) | 10.3390/life6030037 | 2016 | |
| The core and unique proteins of haloarchaea. | Capes MD, DasSarma P, DasSarma S. | BMC Genomics | 10.1186/1471-2164-13-39 | 2012 | |
| A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T. | Siddaramappa S, Challacombe JF, Decastro RE, Pfeiffer F, Sastre DE, Gimenez MI, Paggi RA, Detter JC, Davenport KW, Goodwin LA, Kyrpides N, Tapia R, Pitluck S, Lucas S, Woyke T, Maupin-Furlow JA. | BMC Genomics | 10.1186/1471-2164-13-165 | 2012 | |
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| #2088 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5511 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #38625 | ; Curators of the CIP; |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #66793 | Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 ) |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #123698 | Collection of Institut Pasteur ; Curators of the CIP; CIP 106419 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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BacDive in 2025: the core database for prokaryotic strain data