Haloincola saccharolyticus subsp. saccharolyticus (DSM 6643, Z-7787)

Name: Haloincola saccharolyticus subsp. saccharolyticus (DSM 6643, Z-7787)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5864

Type strain

Strain Designation Z-7787

Culture col. no. DSM 6643 Z-7787

NCBI tax ID(s) 1293054 43595 267736

Special Collections DSMZ

History <- T. N. Zhilina, Z-7787

Links

Haloincola saccharolyticus subsp. saccharolyticus Z-7787 is an anaerobe bacterium that was isolated from Microcoleus chthonoplastes mat overlying bacterial layers and sulphate reducing zone.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 48261

DSM 6643

@ref 20215

Last LPSN update 2026-02-09 11:19:04

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Halanaerobiales

Family Halanaerobiaceae

Genus Haloincola

Species Haloincola saccharolyticus subsp. saccharolyticus

Full scientific name Haloincola saccharolyticus subsp. saccharolyticus corrig. (Zhilina et al. 1992) Cayol et al. 1994

Synonyms (3)

Haloincola saccharolytica subsp. saccharolytica
Halanaerobium saccharolyticum subsp. saccharolyticum
Haloanaerobium saccharolyticum subsp. saccharolyticum

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
2648	HALOBACTEROIDES/HALOINCOLA MEDIUM (DSMZ Medium 591)		Medium recipe at MediaDive	Name: HALOBACTEROIDES/HALOINCOLA MEDIUM (DSMZ Medium 591; with strain-specific modifications) Composition: NaCl 100.0 g/l Peptone 5.0 g/l Glucose 5.0 g/l NaHCO3 1.5 g/l Na2S x 9 H2O 0.5 g/l NH4Cl 0.33 g/l KH2PO4 0.33 g/l KCl 0.33 g/l MgCl2 0.33 g/l CaCl2 0.33 g/l HCl 0.0025 g/l Resazurin 0.002 g/l FeCl2 x 4 H2O 0.0015 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l Pyridoxine hydrochloride 0.0001 g/l ZnCl2 7e-05 g/l Riboflavin 5e-05 g/l (DL)-alpha-Lipoic acid 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Calcium D-(+)-pantothenate 5e-05 g/l Nicotinic acid 5e-05 g/l Thiamine HCl 5e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Biotin 2e-05 g/l Folic acid 2e-05 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Vitamin B12 1e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
2648	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
2648	anaerobe
125439	anaerobe	97.8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Microbial community	#Microbial mat
#Host	#Microbial	#Bacteria
#Condition	#Sulfuric	-

Isolation

@ref	Sample type	Host species	Geographic location
2648	Microcoleus chthonoplastes mat overlying bacterial layers and sulphate reducing zone	Microcoleus chthonoplastes	Eastern Crimea, lagoons of the southern part of the Arabat Strait

Taxonmaps

69479

Global distribution of 16S sequence X89069 (>99% sequence identity) for Halanaerobium from Microbeatlas

Aquatic Samples	381
Soil Samples	170
Animal Samples	375
Plant Samples	21
Total Samples	947

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
2648	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM35016v1 assembly for Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 type strain:DSM 6643	contig	GCA_000350165	1293054.3	2600255242	1293054	62.31

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Halanaerobium saccharolyticum subsp. saccharolyticum 16S ribosomal RNA gene, complete sequence	L37424	1484		1293054
2648	Halanaerobium saccharolyticum subsp. saccharolyticum gene for 16S ribosomal RNA, strain DSM 6643	X89069	1486		1293054

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 type strain:DSM 6643
NCBI: GCA_000350165

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	72.50	no
125439	motility	BacteriaNetⓘ	yes	77.50	no
125439	gram_stain	BacteriaNetⓘ	positive	74.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	97.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643
PATRIC: 1293054.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	79.85	no
125438	anaerobic	anaerobicⓘ	yes	86.94	yes
125438	spore-forming	spore-formingⓘ	no	53.95	no
125438	aerobic	aerobicⓘ	no	91.66	no
125438	thermophilic	thermophileⓘ	no	84.74	yes
125438	flagellated	motile2+ⓘ	yes	69.08	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Metagenomic- and Cultivation-Based Exploration of Anaerobic Chloroform Biotransformation in Hypersaline Sediments as Natural Source of Chloromethanes.	Peng P, Lu Y, Bosma TNP, Nijenhuis I, Nijsse B, Shetty SA, Ruecker A, Umanets A, Ramiro-Garcia J, Kappler A, Sipkema D, Smidt H, Atashgahi S.	Microorganisms	10.3390/microorganisms8050665	2020
Metabolism	Predominance and Metabolic Potential of Halanaerobium spp. in Produced Water from Hydraulically Fractured Marcellus Shale Wells.	Lipus D, Vikram A, Ross D, Bain D, Gulliver D, Hammack R, Bibby K.	Appl Environ Microbiol	10.1128/aem.02659-16	2017
Genetics	Genome Sequence of Halanaerobium saccharolyticum subsp. saccharolyticum Strain DSM 6643T, a Halophilic Hydrogen-Producing Bacterium.	Kivisto A, Larjo A, Ciranna A, Santala V, Roos C, Karp M	Genome Announc	10.1128/genomeA.00187-13	2013

References

#2648	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6643
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Haloincola saccharolyticus subsp. saccharolyticus (DSM 6643, Z-7787)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000350165

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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