Name: Glycomyces scopariae DSM 44968
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5847

Type strain:

Species: Glycomyces scopariae

Culture col. no.: DSM 44968, KCTC 19158, YIM 56256, JCM 16218, NBRC 107832

Strain history: <- S-K Tang, Yunnan Inst. Microbiol, China

NCBI tax ID(s): 480997 (species)

SI-ID 297465

DSM 44968, KCTC 19158, JCM 16218

Section

Glycomyces scopariae DSM 44968 is an aerobe, mesophilic, Gram-positive bacterium that builds an aerial mycelium and was isolated from surface-sterilized roots of Scoparia dulcis collected from tropical rainforest.

Gram-positive
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Glycomycetales*
	Family	*Glycomycetaceae*
	Genus	*Glycomyces*
	Species	**Glycomyces scopariae**
	Full Scientific Name (LPSN)	Glycomyces scopariae Qin et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #31211]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #19712]	Colony color	Beige
[Ref.: #19712]	Incubation period	10-14 days
[Ref.: #19712]	Cultivation medium used	ISP 2

[Ref.: #19712]	Colony color	Honey yellow
[Ref.: #19712]	Incubation period	10-14 days
[Ref.: #19712]	Cultivation medium used	ISP 3

[Ref.: #19712]	Colony color	Honey yellow
[Ref.: #19712]	Incubation period	10-14 days
[Ref.: #19712]	Cultivation medium used	ISP 4

[Ref.: #19712]	Colony color	Honey yellow
[Ref.: #19712]	Incubation period	10-14 days
[Ref.: #19712]	Cultivation medium used	ISP 5

[Ref.: #19712]	Colony color	Honey yellow
[Ref.: #19712]	Incubation period	10-14 days
[Ref.: #19712]	Cultivation medium used	ISP 6

[Ref.: #19712]	Colony color	Honey yellow
[Ref.: #19712]	Incubation period	10-14 days
[Ref.: #19712]	Cultivation medium used	ISP 7

[Ref.: #31211]

Pigment production

[Ref.: #19712]	Multicellular complex forming ability	yes
[Ref.: #19712]	Multicellular complex name	Aerial Mycelium
[Ref.: #19712]	Medium Name (multicellularity)	ISP 2

[Ref.: #19712]	Multicellular complex forming ability	yes
[Ref.: #19712]	Multicellular complex name	Aerial Mycelium
[Ref.: #19712]	Multicellular complex color	Cream
[Ref.: #19712]	Medium Name (multicellularity)	ISP 3

[Ref.: #19712]	Multicellular complex forming ability	yes
[Ref.: #19712]	Multicellular complex name	Aerial Mycelium
[Ref.: #19712]	Medium Name (multicellularity)	ISP 4

[Ref.: #19712]	Multicellular complex forming ability	no
[Ref.: #19712]	Medium Name (multicellularity)	ISP 5

[Ref.: #19712]	Multicellular complex forming ability	yes
[Ref.: #19712]	Multicellular complex name	Aerial Mycelium
[Ref.: #19712]	Multicellular complex color	Cream
[Ref.: #19712]	Medium Name (multicellularity)	ISP 6

[Ref.: #19712]	Multicellular complex forming ability	yes
[Ref.: #19712]	Multicellular complex name	Aerial Mycelium
[Ref.: #19712]	Multicellular complex color	Cream
[Ref.: #19712]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12127]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #12127]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

[Ref.: #19712]

Culture medium

ISP 2

[Ref.: #19712]

Culture medium growth

[Ref.: #19712]

Culture medium composition

expand / minimize

[Ref.: #19712]

Culture medium

ISP 3

[Ref.: #19712]

Culture medium growth

[Ref.: #19712]

Culture medium composition

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[Ref.: #19712]

Culture medium

ISP 4

[Ref.: #19712]

Culture medium growth

[Ref.: #19712]

Culture medium composition

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[Ref.: #19712]

Culture medium

ISP 5

[Ref.: #19712]

Culture medium growth

[Ref.: #19712]

Culture medium composition

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[Ref.: #19712]

Culture medium

ISP 6

[Ref.: #19712]

Culture medium growth

[Ref.: #19712]

Culture medium composition

expand / minimize

[Ref.: #19712]

Culture medium

ISP 7

[Ref.: #19712]

Culture medium growth

[Ref.: #19712]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #12127]	growth	28 °C
[Ref.: #19712]	optimum	28 °C
[Ref.: #31211]	growth	20-37 °C
[Ref.: #31211]	optimum	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #12127]	Temperature range	mesophilic
[Ref.: #19712]	Temperature range	mesophilic
[Ref.: #31211]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31211]			optimum	7
[Ref.: #31211]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31211]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31211]		NaCl		growth	0-5	%
[Ref.: #31211]		NaCl		optimum	2.5	%

[Ref.: #31211]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: MK-10(H₄), MK-11(H₄), MK-11

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31211]	cellobiose ChEBI	+	carbon source
[Ref.: #31211]	esculin ChEBI	+	hydrolysis
[Ref.: #31211]	galactose ChEBI	+	carbon source
[Ref.: #31211]	malate ChEBI	+	carbon source
[Ref.: #31211]	maltose ChEBI	+	carbon source
[Ref.: #31211]	mannitol ChEBI	+	carbon source
[Ref.: #31211]	propionate ChEBI	+	carbon source
[Ref.: #31211]	succinate ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #31211]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19712]	537	not determinedn.d.	+	+	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12127]	Sample type/isolated from	surface-sterilized roots of Scoparia dulcis collected from tropical rainforest
[Ref.: #12127]	Host species	Scoparia dulcis
[Ref.: #12127]	Geographic location (country and/or sea, region)	Yunnan Province, Xishuangbanna
[Ref.: #12127]	Country	China
[Ref.: #12127]	Country ISO 3 Code	CHN
[Ref.: #12127]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Roots of Scoparia dulcis from a tropical rainforest
[Ref.: #67770]	Host species	Scoparia dulcis
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xishuangbanna, Yunnan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From plant
[Ref.: #67771]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part
#Climate	#Hot	#Tropical

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12127]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12127]	Glycomyces scopariae strain YIM 56256 16S ribosomal RNA gene, partial sequence	EU200682	1387	ENA	480997 tax ID

[Ref.: #12127]	GC-content	72.2 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31211]	GC-content	72.2 mol%

Availability in culture collections External links

[Ref.: #12127]

Culture collection no.

DSM 44968, KCTC 19158, YIM 56256, JCM 16218, NBRC 107832

[Ref.: #75328]

SI-ID 297465

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Glycomyces terrestris sp. nov., isolated from extremely arid soil from Yuanmou Earth Forest.	Li Q, Li G, Lang L, An D, Jiang C, Jiang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004580	2020	*
Phylogeny	Glycomyces albidus sp. nov., a novel actinobacterium isolated from rhizosphere soil of wheat (Triticum aestivum L.).	Qian L, Duan L, Lin J, Yang Y, Song J, Wang X, Zhao J, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.004131	2020	*
Phylogeny	Glycomyces dulcitolivorans sp. nov., isolated from rhizosphere soil of wheat (Triticum aestivum L.).	Mu S, Sun T, Li Y, Jiang S, Guo X, Wang X, Zhao J, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.002948	2018	*
Phylogeny	Glycomyces artemisiae sp. nov., an endophytic actinomycete isolated from the roots of Artemisia argyi.	Zhang X, Ren K, Du J, Liu H, Zhang L	Int J Syst Evol Microbiol	10.1099/ijs.0.063388-0	2014	*
Phylogeny	Glycomyces scopariae sp. nov. and Glycomyces mayteni sp. nov., isolated from medicinal plants in China.	Qin S, Chen HH, Klenk HP, Zhao GZ, Li J, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/005942-0	2009	*

References

#12127

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44968

#19712

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31211

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27538 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#75328

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297465.1 )

#27538

IJSEM 1023 2009 ( DOI 10.1099/ijs.0.2008/005942-0 , PubMed 19406786 )

* These data were automatically processed and therefore are not curated

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