Glycomyces mayteni (DSM 45304, CCTCC AA 208004, KCTC 19527)

Name: Glycomyces mayteni (DSM 45304, CCTCC AA 208004, KCTC 19527)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5846

Type strain

Culture col. no. DSM 45304 CCTCC AA 208004 KCTC 19527 YIM 61331 JCM 16217

NCBI tax ID(s) 543887

Special Collections DSMZ JCM KCTC Wink compendium Literature strains

History DSMZ <- S.-K. Tang, Yunnan Univ., Kunming; YIM 61331 <- S. Qin JCM <-- KCTC 19527 <-- S.-K. Tang YIM 61331. KCTC <- S-K Tang, Yunnan Inst., China

Links

Glycomyces mayteni DSM 45304 is an aerobe, Gram-positive bacterium that builds an aerial mycelium and was isolated from surface-sterilized roots of Maytenus austroyunnanensis collected from tropical rainforest.

Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 402337

KCTC 19527,JCM 16217,DSM 45304

@ref 20215

Last LPSN update 2026-05-29 08:26:16

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Glycomycetales

Family Glycomycetaceae

Genus Glycomyces

Species Glycomyces mayteni

Full scientific name Glycomyces mayteni Qin et al. 2009

Morphology

Cell morphology

@ref	Confidence	Gram stain
31211		positive
67771		positive
125439	92.7
125439	98.845	positive

Colony morphology

@ref	Colony color	Incubation period	Medium used
20187	Brown beige (1011)	10-14 days	ISP 2
20187	Brown beige (1011)	10-14 days	ISP 3
20187	Colorless	10-14 days	ISP 4
20187	Brown beige (1011)	10-14 days	ISP 5
20187	Colorless	10-14 days	ISP 6
20187	Brown beige (1011)	10-14 days	ISP 7

Multicellular morphology

@ref	Complex name	Complex color	Medium name
20187	Aerial Mycelium		ISP 2
20187			ISP 3
20187	Aerial Mycelium	Cream	ISP 4
20187	Aerial Mycelium	Cream	ISP 5
20187			ISP 6
20187	Aerial Mycelium	Cream	ISP 7

Pigmentation

31211

Productionno

Multimedia

@ref:	16159
multimedia content:	DSM_45304.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45304.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16159	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
20187	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
20187	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
20187	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
20187	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
20187	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
20187	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
16159	ISP2 MEDIUM (DSMZ Medium 987)	Medium recipe at MediaDive	Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16159	positive	growth	28
20187	positive	optimum	28
31211	positive	growth	15-37
31211	positive	optimum	28
67770	positive	growth	28
67771	positive	growth	28

Culture pH

@ref	Ability	Type	PH
31211	positive	optimum	7
31211	positive	growth	06-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31211	aerobe
67771	aerobe
125439	obligate aerobe	96.306

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31211	NaCl	positive	growth	0-5 %
31211	NaCl	positive	optimum	2.5 %

Observation

@ref	Observation
31211	aggregates in chains
67770	quinones: MK-11, MK-11(H₄), MK-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31211	23652 ChEBI	dextrin	+	carbon source
31211	4853 ChEBI	esculin	+	hydrolysis
31211	28757 ChEBI	fructose	+	carbon source
31211	28260 ChEBI	galactose	+	carbon source
31211	17234 ChEBI	glucose	+	carbon source
31211	25115 ChEBI	malate	+	carbon source
31211	17306 ChEBI	maltose	+	carbon source
31211	29864 ChEBI	mannitol	+	carbon source
31211	17632 ChEBI	nitrate	+	reduction
31211	17992 ChEBI	sucrose	+	carbon source
31211	27082 ChEBI	trehalose	+	carbon source
31211	16199 ChEBI	urea	+	carbon source
31211	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	+	3.2.1.31	from API zym
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
31211	gelatinase	+
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	+		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68382	trypsin	+	3.4.21.4	from API zym
31211	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
20187	not determinedn.d.	+	+	+	+	-	-	-	+	-	+	+	+	+	+	+	+	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part
#Climate	#Hot	#Tropical

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
16159	surface-sterilized roots of Maytenus austroyunnanensis collected from tropical rainforest	Maytenus austroyunnanensis	Yunnan, Xishuangbanna	China	CHN	Asia
67770	Roots of Maytenus austroyunnanensis from a tropical rainforest	Maytenus austroyunnanensis	Xishuangbanna, Yunnan Province	China	CHN	Asia
67771	From plant		Yunnan	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16159	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4266382v1 assembly for Glycomyces mayteni JCM 16217	scaffold	GCA_042663825	543887	57.73
124043	ASM4265998v1 assembly for Glycomyces mayteni JCM 16217	contig	GCA_042659985	543887	57.41
124043	ASM4242888v1 assembly for Glycomyces mayteni JCM 16217	contig	GCA_042428885	543887	55.54

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16159	Glycomyces mayteni strain YIM 61331 16S ribosomal RNA gene, partial sequence	EU814511	1415		543887

GC content

@ref	GC-content (mol%)	Method
16159	71.5
67770	71.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4266382v1 assembly for Glycomyces mayteni JCM 16217
NCBI: GCA_042663825

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.31	no
125439	gram_stain	BacteriaNetⓘ	positive	98.85	no
125439	motility	BacteriaNetⓘ	no	92.70	no
125439	spore_formation	BacteriaNetⓘ	yes	81.23	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Glycomyces terrestris sp. nov., isolated from extremely arid soil from Yuanmou Earth Forest.	Li Q, Li G, Lang L, An D, Jiang C, Jiang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004580	2020
Phylogeny	Glycomyces albidus sp. nov., a novel actinobacterium isolated from rhizosphere soil of wheat (Triticum aestivum L.).	Qian L, Duan L, Lin J, Yang Y, Song J, Wang X, Zhao J, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.004131	2020
Phylogeny	Glycomyces dulcitolivorans sp. nov., isolated from rhizosphere soil of wheat (Triticum aestivum L.).	Mu S, Sun T, Li Y, Jiang S, Guo X, Wang X, Zhao J, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.002948	2018
Phylogeny	Glycomyces artemisiae sp. nov., an endophytic actinomycete isolated from the roots of Artemisia argyi.	Zhang X, Ren K, Du J, Liu H, Zhang L	Int J Syst Evol Microbiol	10.1099/ijs.0.063388-0	2014
Phylogeny	Glycomyces scopariae sp. nov. and Glycomyces mayteni sp. nov., isolated from medicinal plants in China.	Qin S, Chen HH, Klenk HP, Zhao GZ, Li J, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/005942-0	2009

References

#16159	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45304
#20187	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27538	IJSEM 1023 2009 ( DOI 10.1099/ijs.0.2008/005942-0 , PubMed 19406786 )
#31211	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27538
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68382	Automatically annotated from API zym .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Glycomyces mayteni (DSM 45304, CCTCC AA 208004, KCTC 19527)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042663825

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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