Glycomyces lechevalierae (DSM 44724, JCM 14912, NBRC 107746)

Name: Glycomyces lechevalierae (DSM 44724, JCM 14912, NBRC 107746)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5842

Type strain

Strain Designation LLR-37B-118

Culture col. no. DSM 44724 JCM 14912 NBRC 107746 NRRL B-16149 LLR-37B-118 1 more

NCBI tax ID(s) 256034

Special Collections DSMZ JCM Wink compendium Literature strains

History <- D. P. Labeda, NRRL <- IMRU; LLR-37B-118 <- M. P. Lechevalier DSM 44724 <-- NRRL B-16149 <-- M. P. Lechevalier LLR-37B-118.

Links

Glycomyces lechevalierae LLR-37B-118 is an aerobe, spore-forming, Gram-positive bacterium that builds an aerial mycelium and was isolated from soil.

spore-forming Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 132662

NBRC 107746,NRRL B-16149,DSM 44724,NBRC 103885,JCM 14912,NBRC 104152

@ref 20215

Last LPSN update 2026-02-09 11:19:04

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Glycomycetales

Family Glycomycetaceae

Genus Glycomyces

Species Glycomyces lechevalierae

Full scientific name Glycomyces lechevalierae Labeda and Kroppenstedt 2004

Morphology

Cell morphology

@ref	Gram stain	Cell length	Confidence
31227	positive	0.375 µm
125439	positive		99.9
125439			96.2

Colony morphology

@ref	Colony color	Incubation period	Medium used
20105	Beige (1001)	10-14 days	ISP 2
20105	Beige (1001)	10-14 days	ISP 3
20105	Beige (1001)	10-14 days	ISP 4
20105	Beige (1001)	10-14 days	ISP 5
20105		10-14 days	ISP 6
20105	Beige (1001)	10-14 days	ISP 7

Multicellular morphology

@ref	Complex name	Complex color	Medium name
20105			ISP 2
20105	Aerial Mycelium	White	ISP 3
20105			ISP 4
20105	Aerial Mycelium	White	ISP 5
20105			ISP 6
20105	Aerial Mycelium	White	ISP 7

Pigmentation

31227

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
12042	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
20105	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
20105	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
20105	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
20105	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
20105	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
20105	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
12042	N-Z-AMINE-MEDIUM (DSMZ Medium 554)	Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
12042	positive	growth	28
20105	positive	optimum	28
31227	positive	growth	15-37
31227	positive	optimum	26
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31227	aerobe
125439	obligate aerobe	97.8

Spore formation

@ref	Spore formation	Confidence
31227
125439		90.8

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31227	NaCl	positive	optimum	5 %

Observation

67770

Observationquinones: MK-10, MK-10(H₂), MK-10(H₄), MK-11, MK-11(H₂), MK-11(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31227	30089 ChEBI	acetate	+	carbon source
20105	22599 ChEBI	arabinose	-
31227	22599 ChEBI	arabinose	+	carbon source
31227	17057 ChEBI	cellobiose	+	carbon source
20105	62968 ChEBI	cellulose	-
31227	16947 ChEBI	citrate	+	carbon source
31227	23652 ChEBI	dextrin	+	carbon source
31227	4853 ChEBI	esculin	+	hydrolysis
20105	28757 ChEBI	fructose	-
31227	28757 ChEBI	fructose	+	carbon source
31227	28260 ChEBI	galactose	+	carbon source
20105	17234 ChEBI	glucose	-
31227	17234 ChEBI	glucose	+	carbon source
31227	17754 ChEBI	glycerol	+	carbon source
31227	17716 ChEBI	lactose	+	carbon source
31227	25115 ChEBI	malate	+	carbon source
31227	17306 ChEBI	maltose	+	carbon source
20105	29864 ChEBI	mannitol	-
31227	37684 ChEBI	mannose	+	carbon source
31227	28053 ChEBI	melibiose	+	carbon source
20105	17268 ChEBI	myo-inositol	+
31227	17268 ChEBI	myo-inositol	+	carbon source
31227	17632 ChEBI	nitrate	+	reduction
20105	16634 ChEBI	raffinose	-
20105	26546 ChEBI	rhamnose	+
31227	26546 ChEBI	rhamnose	+	carbon source
31227	15963 ChEBI	ribitol	+	carbon source
31227	17814 ChEBI	salicin	+	carbon source
31227	30911 ChEBI	sorbitol	+	carbon source
31227	30031 ChEBI	succinate	+	carbon source
20105	17992 ChEBI	sucrose	+
31227	17992 ChEBI	sucrose	+	carbon source
31227	27082 ChEBI	trehalose	+	carbon source
20105	18222 ChEBI	xylose	-
31227	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	+	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
31227	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68382	trypsin	-	3.4.21.4	from API zym
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
20105	not determinedn.d.	+	+	+	-	+	-	-	-	+	+	+	+	+	-	+	+	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
31227	soil
67770	Soil from a corn field	Greensburg, PA	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence AY462041 (>99% sequence identity) for Glycomyces from Microbeatlas

Aquatic Samples	25
Soil Samples	588
Animal Samples	39
Plant Samples	125
Total Samples	777

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
12042	1	Risk group (German classification) According to TRBA 466
20105	1	German classification According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3145829v1 assembly for Glycomyces lechevalierae DSM 44724	contig	GCA_031458295	256034.4	2923443038	256034	71.98
124043	ASM3953032v1 assembly for Glycomyces lechevalierae JCM 14912	contig	GCA_039530325			256034	54.7
66792	ASM2762294v1 assembly for Glycomyces lechevalierae DSM 44724	scaffold	GCA_027622945	256034.3	8049252865	256034	49.97

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31227	Glycomyces lechevalierae 16S ribosomal RNA gene, partial sequence	AY462041	1507		256034

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Glycomyces lechevalierae DSM 44724
NCBI: GCA_027622945

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	90.80	no
125439	motility	BacteriaNetⓘ	no	96.20	no
125439	gram_stain	BacteriaNetⓘ	positive	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.80	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Glycomyces niveus sp. nov., a novel actinomycete isolated from sandy soil.	Yang X, Cao H, Xu X, Xie J, Chen J, Xiang W, Zhao J, Wang X.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006265	2024
Phylogeny	Glycomyces luteolus sp. nov., a novel actinomycete isolated from rhizosphere soil of wheat (Triticum aestivum L.).	Duan L, Song W, Jiang S, Qian L, Guo X, Wang X, Zhao J, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-018-1200-z	2018
Phylogeny	Glycomyces endophyticus sp. nov., an endophytic actinomycete isolated from the root of Carex baccans Nees.	Qin S, Wang HB, Chen HH, Zhang YQ, Jiang CL, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/000398-0	2008
Phylogeny	Emended description of the genus Glycomyces and description of Glycomyces algeriensis sp. nov., Glycomyces arizonensis sp. nov. and Glycomyces lechevalierae sp. nov.	Labeda DP, Kroppenstedt RM	Int J Syst Evol Microbiol	10.1099/ijs.0.63089-0	2004

References

#12042	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44724
#20105	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27553	IJSEM 2343 2004 ( DOI 10.1099/ijs.0.63089-0 , PubMed 15545481 )
#31227	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27553
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Glycomyces lechevalierae (DSM 44724, JCM 14912, NBRC 107746)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_031458295

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media