Domibacillus aminovorans (DSM 4337)

Name: Domibacillus aminovorans (DSM 4337)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 582

Type strain

Culture col. no. DSM 4337

NCBI tax ID(s) 29332

Special Collections DSMZ

Links

Domibacillus aminovorans DSM 4337 is a mesophilic prokaryote that was isolated from field soil.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 47834

LMG 29521,DSM 4337,KCTC 3565

@ref 20215

Last LPSN update 2025-12-16 09:46:53

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Domibacillus

Species Domibacillus aminovorans

Full scientific name Domibacillus aminovorans Verma et al. 2022

Morphology

Cell morphology

@ref	Motility	Confidence
125439		91.4

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
1656	SPORULATION MEDIUM (DSMZ Medium 531)		Medium recipe at MediaDive	Name: SPORULATION MEDIUM (DSMZ Medium 531) Composition: Agar 10.0 g/l Nutrient broth 6.0 g/l Trypticase 2.0 g/l Yeast extract 1.0 g/l Marine Broth 0.5 g/l Inosin 0.00134113 g/l MnSO4 x H2O 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
1656	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.5

Spore formation

@ref	Spore formation	Confidence
125439		92.8
125438		91.053

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	propanol degradation	100	7 of 7
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	vitamin B1 metabolism	100	13 of 13
66794	aspartate and asparagine metabolism	100	9 of 9
66794	enterobactin biosynthesis	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	butanoate fermentation	100	4 of 4
66794	valine metabolism	100	9 of 9
66794	lipoate biosynthesis	100	5 of 5
66794	methylglyoxal degradation	100	5 of 5
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	biotin biosynthesis	100	4 of 4
66794	L-lactaldehyde degradation	100	3 of 3
66794	pentose phosphate pathway	100	11 of 11
66794	vitamin K metabolism	100	5 of 5
66794	sulfopterin metabolism	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	denitrification	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	gluconeogenesis	100	8 of 8
66794	ribulose monophosphate pathway	100	2 of 2
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	threonine metabolism	90	9 of 10
66794	NAD metabolism	88.89	16 of 18
66794	chorismate metabolism	88.89	8 of 9
66794	ketogluconate metabolism	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	vitamin B12 metabolism	82.35	28 of 34
66794	methionine metabolism	80.77	21 of 26
66794	glycine betaine biosynthesis	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	flavin biosynthesis	80	12 of 15
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	photosynthesis	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	glutamate and glutamine metabolism	75	21 of 28
66794	acetate fermentation	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	purine metabolism	73.4	69 of 94
66794	citric acid cycle	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	propionate fermentation	70	7 of 10
66794	Entner Doudoroff pathway	70	7 of 10
66794	4-hydroxyphenylacetate degradation	70	7 of 10
66794	phenylalanine metabolism	69.23	9 of 13
66794	leucine metabolism	69.23	9 of 13
66794	urea cycle	69.23	9 of 13
66794	degradation of sugar alcohols	68.75	11 of 16
66794	octane oxidation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	pyrimidine metabolism	66.67	30 of 45
66794	cyanate degradation	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	d-mannose degradation	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	alanine metabolism	65.52	19 of 29
66794	oxidative phosphorylation	63.74	58 of 91
66794	proline metabolism	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	tryptophan metabolism	60.53	23 of 38
66794	glycogen metabolism	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	3-chlorocatechol degradation	60	3 of 5
66794	factor 420 biosynthesis	60	3 of 5
66794	arachidonate biosynthesis	60	3 of 5
66794	arginine metabolism	58.33	14 of 24
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	cysteine metabolism	55.56	10 of 18
66794	histidine metabolism	55.17	16 of 29
66794	d-xylose degradation	54.55	6 of 11
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	lysine metabolism	52.38	22 of 42
66794	lipid metabolism	51.61	16 of 31
66794	kanosamine biosynthesis II	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	CMP-KDO biosynthesis	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	resorcinol degradation	50	1 of 2
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	lactate fermentation	50	2 of 4
66794	starch degradation	50	5 of 10
66794	degradation of pentoses	50	14 of 28
66794	quinate degradation	50	1 of 2
66794	degradation of sugar acids	48	12 of 25
66794	vitamin B6 metabolism	45.45	5 of 11
66794	phenol degradation	45	9 of 20
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	glutathione metabolism	42.86	6 of 14
66794	glycine metabolism	40	4 of 10
66794	3-phenylpropionate degradation	40	6 of 15
66794	polyamine pathway	39.13	9 of 23
66794	sulfate reduction	38.46	5 of 13
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	sphingosine metabolism	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	degradation of hexoses	33.33	6 of 18
66794	ascorbate metabolism	31.82	7 of 22
66794	coenzyme M biosynthesis	30	3 of 10
66794	myo-inositol biosynthesis	30	3 of 10
66794	tyrosine metabolism	28.57	4 of 14
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	carotenoid biosynthesis	27.27	6 of 22
66794	metabolism of disaccharids	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	carnitine metabolism	25	2 of 8
66794	toluene degradation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	methanogenesis from CO2	25	3 of 12
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	nitrate assimilation	22.22	2 of 9
66794	allantoin degradation	22.22	2 of 9
66794	arachidonic acid metabolism	22.22	4 of 18

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
1656	field soil	Germany	DEU	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM164324v1 assembly for Domibacillus aminovorans DSM 4337	scaffold	GCA_001643245	29332.6	2744054584	29332	69.46

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	[Bacillus] aminovorans partial 16S rRNA gene, culture collection DSM:4337	LT174523	1540		29332

GC content

1656

GC-content (mol%)41.7

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Domibacillus aminovorans DSM 4337
NCBI: GCA_001643245

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	92.80	no
125439	motility	BacteriaNetⓘ	yes	91.40	no
125439	gram_stain	BacteriaNetⓘ	variable	84.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Domibacillus aminovorans DSM 4337
NCBI: GCA_001643245.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	81.41	no
125438	anaerobic	anaerobicⓘ	no	91.08	no
125438	aerobic	aerobicⓘ	yes	73.13	no
125438	spore-forming	spore-formingⓘ	yes	91.05	no
125438	thermophilic	thermophileⓘ	no	90.87	yes
125438	flagellated	motile2+ⓘ	yes	83.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	An investigation into the taxonomy of "Bacillus aminovorans" and its reclassification to the genus Domibacillus as Domibacillus aminovorans sp. nov.	Verma A, Ojha AK, Pal Y, Kumari P, Schumann P, Gruber-Vodicka H, Dastager SG, Natarajan RK, Mayilraj S, Krishnamurthi S	Syst Appl Microbiol	10.1016/j.syapm.2017.07.003	2017

References

#1656	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4337
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Domibacillus aminovorans (DSM 4337)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001643245

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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