Geodermatophilus obscurus G-17 | DSM 43162, ATCC 25079, CBS 235.69, IFO 13318, KCC A-0155, NBRC 13318, JCM 3155, IMET 9242, KCTC 9361, NRRL B-3580, NRRL WC-3938, VKM Ac-1443 | BacDiveID:5817

Strain identifier

BacDive ID: 5817

Type strain:

Species: Geodermatophilus obscurus

Strain Designation: G-17

Culture col. no.: DSM 43162, ATCC 25079, CBS 235.69, IFO 13318, KCC A-0155, NBRC 13318, JCM 3155, IMET 9242, KCTC 9361, NRRL B-3580, NRRL WC-3938, VKM Ac-1443

Strain history: KCC A-0155 <-- G. M. Luedemann G-17.

NCBI tax ID(s): 1523248 (subspecies)

SI-ID 38342

ATCC 25079, DSM 43162, IFO 13318, JCM 3155, IMET 9242, NRRL B-3580, VKM Ac-1443, CBS 235.69, KCTC 9361, NBRC 13318

Other strains from Geodermatophilus obscurus

G. obscurus G-20, CCUG 61914, KCTC 9177, DSM ... (type strain)
G. obscurus ST033402(HKI),

Section

Geodermatophilus obscurus G-17 is a mesophilic, Gram-positive bacterium that was isolated from soil.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Geodermatophilales*
	Family	*Geodermatophilaceae*
	Genus	*Geodermatophilus*
	Species	**Geodermatophilus obscurus**
	Full Scientific Name (LPSN)	Geodermatophilus obscurus Luedemann 1968 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

CZAPEK PEPTONE AGAR (DSMZ Medium 83)

Culture medium growth

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #10830]			growth	37 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #10830]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10830]	Sample type/isolated from	soil
[Ref.: #10830]	Geographic location (country and/or sea, region)	Utah, Zion Nat. Park
[Ref.: #10830]	Country	USA
[Ref.: #10830]	Country ISO 3 Code	USA
[Ref.: #10830]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Zion National Park, UT
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Global distribution of 16S sequence X92357 (>99% sequence identity) for Geodermatophilus from Microbeatlas

Aquatic Samples	3
Soil Samples	59
Animal Samples	6
Plant Samples
Total Samples	68

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Geodermatophilus obscurus subsp. utahensis 16S ribosomal RNA (strain DSM43162)	X92357	1477	ENA	1523248 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Geodermatophilus obscurus DSM 43162	GCA_900143215	scaffold	GenBank	1861 tax ID
[Ref.: #66792]	Geodermatophilus obscurus strain DSM 43162	1861.4	wgs	PATRIC	1861 tax ID	*
[Ref.: #66792]	Geodermatophilus uthaensis DSM 43162	2599185272	draft	JGI IMG/M	1861 tax ID	*

[Ref.: #67770]	GC-content	73-73.8 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	74 mol%	Buoyant density centrifugation (BD)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Geodermatophilus obscurus strain DSM 43162 PATRIC: 1861.4
[Ref.: #69481]	spore-forming	yes	85	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Geodermatophilus obscurus strain DSM 43162 PATRIC: 1861.4
[Ref.: #69480]	motile	yes	75.335	no
[Ref.: #69480]	gram-positive	yes	90.8	no
[Ref.: #69480]	anaerobic	no	98.87	no
[Ref.: #69480]	aerobic	yes	89.053	no
[Ref.: #69480]	halophile	no	82.231	no
[Ref.: #69480]	spore-forming	no	62.146	no
[Ref.: #69480]	glucose-util	yes	85.921	no
[Ref.: #69480]	flagellated	no	93.17	no
[Ref.: #69480]	thermophile	no	97.978	yes
[Ref.: #69480]	glucose-ferment	no	89.688	no

Availability in culture collections External links

Culture collection no.

DSM 43162, ATCC 25079, CBS 235.69, IFO 13318, KCC A-0155, NBRC 13318, JCM 3155, IMET 9242, KCTC 9361, NRRL B-3580, NRRL WC-3938, VKM Ac-1443

SI-ID 38342

*

References

#10830

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43162

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75299

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38342.1 )

* These data were automatically processed and therefore are not curated

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