Name: Geotalea daltonii FRC-32
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5807

Type strain:

Species: Geotalea daltonii

Strain Designation: FRC-32

Culture col. no.: DSM 22248, JCM 15807

Strain history: J. E. Kostka FRC-32.

NCBI tax ID(s): 1203471 (species)

SI-ID 403938

DSM 22248

Special Collections

Section

When using BacDive for research please cite our paper

Geotalea daltonii FRC-32 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from subsurface sediments contaminated with high levels of uranium and aromatic hydrocarbons.

Gram-negative
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Deltaproteobacteria*
	Order	*Desulfuromonadales*
	Family	*Geobacteraceae*
	Genus	*Geotalea*
	Species	**Geotalea daltonii**
	Full Scientific Name (LPSN)	Geotalea daltonii (Prakash et al. 2010) Waite et al. 2020

Synonym

Geobacter daltonii

Information on morphological and physiological properties Morphology

[Ref.: #29320]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %92.475

[Ref.: #29320]	Cell length	1.25 µm

[Ref.: #29320]	Cell width	0.4 µm

[Ref.: #29320]	Cell shape	rod-shaped

[Ref.: #16230]

Incubation period

3-7 days

[Ref.: #29320]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16230]

Culture medium

GEOANAEROBACTER MEDIUM (DSMZ Medium 838)

[Ref.: #16230]

Culture medium growth

[Ref.: #16230]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #16230]	growth	30 °C
[Ref.: #29320]	growth	20-35 °C
[Ref.: #29320]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #29320]			optimum	7
[Ref.: #29320]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16230]	Oxygen tolerance	anaerobe
[Ref.: #29320]	Oxygen tolerance	anaerobe

[Ref.: #29320]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29320]		NaCl		growth	<0.7	%

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16230]	Sample type/isolated from	subsurface sediments contaminated with high levels of uranium(VI) and aromatic hydrocarbons
[Ref.: #16230]	Geographic location (country and/or sea, region)	Tennessee, Oak Ridge, Oak Ridge Field Research Center
[Ref.: #16230]	Country	USA
[Ref.: #16230]	Country ISO 3 Code	USA
[Ref.: #16230]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Contaminated subsurface of Oak Ridge Field Research Center
[Ref.: #67770]	Geographic location (country and/or sea, region)	US Department of Energy, Oak Ridge, TN
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU660516 (>99% sequence identity) for Geobacter from Microbeatlas

Aquatic Samples	505
Soil Samples	714
Animal Samples	11
Plant Samples	30
Total Samples	1260

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16230]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16230]	Geobacter daltonii FRC-32 16S ribosomal RNA gene, partial sequence	EU660516	1424	GenBank ENA	316067 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Geotalea daltonii FRC-32	GCA_000022265	complete	GenBank ENA	316067 tax ID	*

[Ref.: #16230]	GC-content	53 mol%	sequence analysis
[Ref.: #29320]	GC-content	53 mol%

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Geotalea daltonii FRC-32 FRC-32 NCBI: GCA_000022265.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	92.475	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	yes	71.401	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	82.569	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	84.019	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	85.616	no
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	68.907	no

Availability in culture collections External links

[Ref.: #16230]

Culture collection no.

DSM 22248, JCM 15807

[Ref.: #75286]

SI-ID 403938

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Geobacter daltonii sp. nov., an Fe(III)- and uranium(VI)-reducing bacterium isolated from a shallow subsurface exposed to mixed heavy metal and hydrocarbon contamination.	Prakash O, Gihring TM, Dalton DD, Chin KJ, Green SJ, Akob DM, Wanger G, Kostka JE	Int J Syst Evol Microbiol	10.1099/ijs.0.010843-0	2009	*

References

#16230

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22248

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29320

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25732 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75286

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403938.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#25732

IJSEM 546 2010 ( DOI 10.1099/ijs.0.010843-0 , PubMed 19654355 )

* These data were automatically processed and therefore are not curated

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Geotalea daltonii FRC-32 FRC-32

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