Geoanaerobacter pelophilus (DSM 12255, OCM 797, Dfr2)

Name: Geoanaerobacter pelophilus (DSM 12255, OCM 797, Dfr2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5802

Type strain

Strain Designation Dfr2

Culture col. no. DSM 12255 OCM 797 Dfr2

NCBI tax ID(s) 60036

Special Collections DSMZ

Links

Geoanaerobacter pelophilus Dfr2 is an anaerobe prokaryote that was isolated from town ditch sediment.

anaerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 49257

DSM 12255,ATCC BAA-603

@ref 20215

Last LPSN update 2025-12-16 09:48:09

Domain Pseudomonadati

Phylum Thermodesulfobacteriota

Class Desulfuromonadia

Order Geobacterales

Family Geobacteraceae

Genus Geoanaerobacter

Species Geoanaerobacter pelophilus

Full scientific name Geoanaerobacter pelophilus (Straub and Buchholz-Cleven 2001) Xu et al. 2022

Synonyms (3)

"Geomonas pelophila"
Citrifermentans pelophilum
Geobacter pelophilus

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	96.834

Colony morphology

4657

Incubation period3-7 days

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
4657	anaerobe
125439	anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
4657	town ditch sediment	Bremen	Germany	DEU	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4657	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM211797v1 assembly for Geoanaerobacter pelophilus Drf2	scaffold	GCA_002117975	60036.3	2841898008	60036	75.09
66792	ASM1847688v1 assembly for Geoanaerobacter pelophilus DSM 12255	contig	GCA_018476885	60036.17	3001924982	60036	70.51

Genome browser: GCA_002117975

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
4657	Geobacter pelophilus 16S ribosomal RNA gene, complete sequence	U96918	1475		60036

GC content

@ref	GC-content (mol%)	Method
4657	53	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Geoanaerobacter pelophilus Dfr2
NCBI: GCA_002117975

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.30	no
125439	motility	BacteriaNetⓘ	no	52.50	no
125439	gram_stain	BacteriaNetⓘ	negative	86.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Geobacter pelophilus strain DSM 12255
PATRIC: 60036.17

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.83	no
125438	anaerobic	anaerobicⓘ	yes	73.19	yes
125438	spore-forming	spore-formingⓘ	no	81.86	no
125438	aerobic	aerobicⓘ	no	84.53	yes
125438	thermophilic	thermophileⓘ	no	90.06	no
125438	flagellated	motile2+ⓘ	yes	73.26	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Geobacter bremensis sp. nov. and Geobacter pelophilus sp. nov., two dissimilatory ferric-iron-reducing bacteria.	Straub KL, Buchholz-Cleven BE	Int J Syst Evol Microbiol	10.1099/00207713-51-5-1805	2001

References

#4657	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12255
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Geoanaerobacter pelophilus (DSM 12255, OCM 797, Dfr2)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002117975

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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