Name: Fusobacterium vincentii EM48
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5775

Type strain:

Species: Fusobacterium vincentii

Strain Designation: EM48

Culture col. no.: DSM 19507, ATCC 49256, CIP 104988, JCM 11023, CCUG 37843

Strain history: CIP <- 1996, ATCC <- J.L. Dzink: strain EM48

NCBI tax ID(s): 209882 (strain), 155615 (subspecies)

SI-ID 42385

CIP 104988, ATCC 49256, CCUG 37843, JCM 11023, KCTC 5105, DSM 19507

Other strains from Fusobacterium vincentii

F. vincentii SOR, OR, DSM 19508, ATCC 51190, ...
F. vincentii 1789, CIP 60.39

Section

Fusobacterium vincentii EM48 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from human, periodontal pocket.

Gram-negative
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Fusobacteriota*
	Class	*Fusobacteriia*
	Order	*Fusobacteriales*
	Family	*Fusobacteriaceae*
	Genus	*Fusobacterium*
	Species	**Fusobacterium vincentii**
	Full Scientific Name (LPSN)	Fusobacterium vincentii (Dzink et al. 1990 ex Knorr 1922) Kook et al. 2022

	Synonym	Fusobacterium nucleatum subsp. fusiforme
	Synonym	Fusobacterium nucleatum subsp. vincentii

Information on morphological and physiological properties Morphology

[Ref.: #121370]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.854

[Ref.: #121370]	Cell shape	rod-shaped

[Ref.: #121370]	Motility	no

[Ref.: #8137]	Incubation period	1-2 days

[Ref.: #53908]	Incubation period	2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8137]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #8137]

Culture medium growth

[Ref.: #8137]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8137]

Culture medium composition

expand / minimize

[Ref.: #8137]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #8137]

Culture medium growth

[Ref.: #8137]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8137]

Culture medium composition

expand / minimize

[Ref.: #41412]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #41412]

Culture medium growth

[Ref.: #41412]

Culture medium composition

expand / minimize

[Ref.: #121370]

Culture medium

CIP Medium 20

[Ref.: #121370]

Culture medium growth

[Ref.: #121370]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8137]	growth	37 °C
[Ref.: #41412]	growth	37 °C
[Ref.: #53908]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #8137]	Temperature range	mesophilic
[Ref.: #41412]	Temperature range	mesophilic
[Ref.: #53908]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8137]	Oxygen tolerance	anaerobe
[Ref.: #53908]	Oxygen tolerance	anaerobe
[Ref.: #121370]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.315

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.99

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68367]	cellobiose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	D-glucose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	D-mannitol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	D-mannose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68367]	D-xylose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	esculin ChEBI	+	hydrolysis	* from API 20A
[Ref.: #68367]	gelatin ChEBI	-	hydrolysis	* from API 20A
[Ref.: #68367]	glycerol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	L-arabinose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68367]	L-rhamnose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	lactose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	maltose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	melezitose ChEBI	-	builds acid from	* from API 20A
[Ref.: #121370]	nitrate ChEBI	+	reduction
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #121370]	nitrite ChEBI	+	reduction
[Ref.: #68367]	raffinose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68367]	salicin ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	sorbitol ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	sucrose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	trehalose ChEBI	-	builds acid from	* from API 20A
[Ref.: #68367]	tryptophan ChEBI	+	energy source	* from API 20A, API rID32A
[Ref.: #68367]	urea ChEBI	-	hydrolysis	* from API 20A, API rID32A
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #121370]		indole ChEBI	yes
[Ref.: #68367]		indole ChEBI	yes	* from API 20A, API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	+	* from API rID32A, API 20A

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym, API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym, API rID32A
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym, API rID32A
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym, API rID32A
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68367]	beta-glucosidase	+	3.2.1.21	* from API 20A
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API rID32A
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API rID32A
[Ref.: #121370]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68367]	gelatinase	-		* from API 20A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym, API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API rID32A
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121370]	oxidase	-
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68380]	tryptophan deaminase	+	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #121370]	urease	-	3.5.1.5
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A, API 20A
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Indole productionIND	Urease/urea hydrolysisURE	Acid from D-glucoseGLU	Acid from D-mannitolMAN	Acid from lactoseLAC	Acid from sucroseSAC	Acid from maltoseMAL	Acid from salicinSAL	Acid from D-xyloseXYL	Acid from L-arabinoseARA	Gelatinase/gelatin hydrolysisGEL	Esculin hydrolysis/beta-glucosidaseESC	Acid from glycerolGLY	Acid from cellobioseCEL	Acid from D-mannoseMNE	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from sorbitolSOR	Acid from L-rhamnoseRHA	Acid from trehaloseTRE	CatalaseCAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
[Ref.: #8137]	2216	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #8137]	12279	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #8137]	12278	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121370]	8355	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8137]	Sample type/isolated from	human, periodontal pocket

[Ref.: #53908]	Sample type/isolated from	Human periodontal pocket

[Ref.: #67770]	Sample type/isolated from	Human oral cavity

[Ref.: #121370]	Sample type/isolated from	Human, Periodontal pocket
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Periodontal pocket

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM887529 (>99% sequence identity) for Fusobacterium from Microbeatlas

Aquatic Samples	32
Soil Samples	16
Animal Samples	3941
Plant Samples	15
Total Samples	4004

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8137]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #121370]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8137]	Fusobacterium nucleatum subsp. vincentii gene for 16S ribosomal RNA, partial sequence, strain: JCM 11023	AB971819	1480	ENA	155615 tax ID
[Ref.: #8137]	Fusobacterium nucleatum subsp. vincentii strain ATCC 49256 16S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF342834	729	ENA	209882 tax ID
[Ref.: #20218]	Fusobacterium nucleatum subsp. vincentii partial 16S rRNA gene, type strain DSM 19507T	AM887529	1431	ENA	155615 tax ID	*
[Ref.: #20218]	Fusobacterium nucleatum subsp. vincentii ATCC 49256 16S ribosomal RNA gene, partial sequence	HM347072	1399	ENA	209882 tax ID	*
[Ref.: #20218]	Fusobacterium nucleatum subsp. vincentii strain ATCC 49256 16S ribosomal RNA gene, partial sequence	GQ301040	1415	ENA	209882 tax ID	*
[Ref.: #20218]	Fusobacterium nucleatum subsp. vincentii ATCC 49256 16S ribosomal RNA, partial	AJ006964	1406	ENA	209882 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Fusobacterium vincentii ATCC 49256	GCA_000182945	contig	GenBank	209882 tax ID
[Ref.: #66792]	Fusobacterium nucleatum subsp. vincentii ATCC 49256	209882.4	wgs	PATRIC	209882 tax ID	*
[Ref.: #66792]	Fusobacterium nucleatum vincentii ATCC 49256	638341097	draft	JGI IMG/M	209882 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Fusobacterium nucleatum subsp. vincentii ATCC 49256 PATRIC: 209882.4
[Ref.: #69481]	spore-forming	yes	66	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Fusobacterium nucleatum subsp. vincentii ATCC 49256 PATRIC: 209882.4
[Ref.: #69480]	motile	no	92.404	no
[Ref.: #69480]	gram-positive	no	93.096	no
[Ref.: #69480]	anaerobic	yes	99.999	yes
[Ref.: #69480]	aerobic	no	98.836	yes
[Ref.: #69480]	halophile	no	76.225	no
[Ref.: #69480]	spore-forming	no	89.789	no
[Ref.: #69480]	glucose-util	yes	79.431	no
[Ref.: #69480]	flagellated	no	95.006	no
[Ref.: #69480]	thermophile	no	94.686	no
[Ref.: #69480]	glucose-ferment	yes	60.669	no

Availability in culture collections External links

[Ref.: #8137]

Culture collection no.

DSM 19507, ATCC 49256, CIP 104988, JCM 11023, CCUG 37843

[Ref.: #75254]

SI-ID 42385

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal of three subspecies of Fusobacterium nucleatum Knorr 1922: Fusobacterium nucleatum subsp. nucleatum subsp. nov., comb. nov.; Fusobacterium nucleatum subsp. polymorphum subsp. nov., nom. rev., comb. nov.; and Fusobacterium nucleatum subsp. vincentii subsp. nov., nom. rev., comb. nov.	Dzink JL, Sheenan MT, Socransky SS	Int J Syst Bacteriol	10.1099/00207713-40-1-74	1990	*

References

#8137

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19507

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41412 ; Curators of the CIP;
#53908 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 37843

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68367

Automatically annotated from API 20A .

#68380

Automatically annotated from API rID32A .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75254

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42385.1 )

#121370 Collection of Institut Pasteur ; Curators of the CIP; CIP 104988
* These data were automatically processed and therefore are not curated

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Fusobacterium nucleatum subsp. vincentii ATCC 49256

Fusobacterium nucleatum subsp. vincentii ATCC 49256

Change proposal

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