Name: Fusobacterium simiae 7511 R2-13
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5772

Type strain:

Species: Fusobacterium simiae

Strain Designation: 7511 R2-13

Culture col. no.: DSM 19848, ATCC 33568, CCM 3660, CCUG 16798, JCM 17465, KCTC 5548

Strain history: KCTC 5548 <-- J. K. Kook <-- CCUG 16798 <-- CCM 3660 <-- J. Slots 7511 R2-13.

NCBI tax ID(s): 855 (species)

SI-ID 44964

ATCC 33568, CCUG 16798, CCM 3660, DSM 19848, JCM 17465

Other strains from Fusobacterium simiae

F. simiae CCUG 2264
F. simiae CCUG 15670, CCUG 2260

Section

Fusobacterium simiae 7511 R2-13 is an anaerobe, mesophilic bacterium that was isolated from Monkey dental plaque .

anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Fusobacteriota*
	Class	*Fusobacteriia*
	Order	*Fusobacteriales*
	Family	*Fusobacteriaceae*
	Genus	*Fusobacterium*
	Species	**Fusobacterium simiae**
	Full Scientific Name (LPSN)	Fusobacterium simiae Slots and Potts 1982

Information on morphological and physiological properties Morphology

[Ref.: #46531]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8287]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #8287]

Culture medium growth

[Ref.: #8287]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8287]

Culture medium composition

expand / minimize

[Ref.: #8287]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #8287]

Culture medium growth

[Ref.: #8287]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8287]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #8287]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #8287]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8287]	Oxygen tolerance	anaerobe
[Ref.: #46531]	Oxygen tolerance	anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	+	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	+	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	yes	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	+	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	+	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	+	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #8287]	12309	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8287]	Sample type/isolated from	Monkey dental plaque (Macaca arctoides)

[Ref.: #46531]	Sample type/isolated from	Monkey dental plaque (Macaca arctoides)

[Ref.: #67770]	Sample type/isolated from	Monkey dental plaque
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Primates
#Host Body-Site	#Oral cavity and airways	#Plaque
#Host Body-Site	#Oral cavity and airways	#Tooth

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB616133 (>99% sequence identity) for Fusobacterium from Microbeatlas

Aquatic Samples	30
Soil Samples	5
Animal Samples	1679
Plant Samples
Total Samples	1714

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8287]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Fusobacterium simiae gene for 16S ribosomal RNA, partial sequence, strain: JCM 17465	AB616133	1466	ENA	855 tax ID
[Ref.: #8287]	Fusobacterium simiae strain ATCC 33568 16S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF342838	741	ENA	855 tax ID
[Ref.: #20218]	Fusobacterium simiae rRNA small subunit	X55407	1332	ENA	855 tax ID	*
[Ref.: #20218]	Fusobacterium simiae strain ATCC 33568 16S ribosomal RNA gene, partial sequence	M58685	1466	ENA	855 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Fusobacterium simiae DSM 19848	GCA_026089295	contig	GenBank	855 tax ID	*

[Ref.: #67770]

GC-content

28 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Fusobacterium simiae DSM 19848 NCBI: GCA_026089295.1
[Ref.: #69480]	motile	no	92.33	no
[Ref.: #69480]	flagellated	no	95.382	no
[Ref.: #69480]	gram-positive	no	91.574	no
[Ref.: #69480]	anaerobic	yes	99.609	yes
[Ref.: #69480]	aerobic	no	98.218	yes
[Ref.: #69480]	halophile	no	76.06	no
[Ref.: #69480]	spore-forming	no	90.308	no
[Ref.: #69480]	glucose-ferment	yes	56.925	no
[Ref.: #69480]	thermophile	no	98.474	yes
[Ref.: #69480]	glucose-util	yes	85.204	no

Availability in culture collections External links

[Ref.: #8287]

Culture collection no.

DSM 19848, ATCC 33568, CCM 3660, CCUG 16798, JCM 17465, KCTC 5548

[Ref.: #75251]

SI-ID 44964

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Stimulation of epithelial cell matrix metalloproteinase (MMP-2, -9, -13) and interleukin-8 secretion by fusobacteria.	Gursoy UK, Kononen E, Uitto VJ	Oral Microbiol Immunol	10.1111/j.1399-302X.2008.00453.x	2008	*

References

#8287

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19848

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#46531 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 16798

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75251

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44964.1 )

* These data were automatically processed and therefore are not curated

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Fusobacterium simiae DSM 19848

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