Fusobacterium simiae (DSM 19848, ATCC 33568, CCM 3660)

Name: Fusobacterium simiae (DSM 19848, ATCC 33568, CCM 3660)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5772

Type strain

Strain Designation 7511 R2-13

Culture col. no. DSM 19848 ATCC 33568 CCM 3660 CCUG 16798 7511 R2-13 2 more

NCBI tax ID(s) 855

Special Collections DSMZ CCUG JCM KCTC

History <- CCUG; 7511 R2-13 {2007} <- CCM <- J. Slots KCTC 5548 <-- J. K. Kook <-- CCUG 16798 <-- CCM 3660 <-- J. Slots 7511 R2-13.

Links

Fusobacterium simiae 7511 R2-13 is an anaerobe bacterium that was isolated from Monkey dental plaque .

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 44964

ATCC 33568,CCUG 16798,CCM 3660,DSM 19848,JCM 17465

@ref 20215

Last LPSN update 2026-02-09 11:19:03

Domain Bacteria

Phylum Fusobacteriota

Class Fusobacteriia

Order Fusobacteriales

Family Fusobacteriaceae

Genus Fusobacterium

Species Fusobacterium simiae

Full scientific name Fusobacterium simiae Slots and Potts 1982

BacDive ID	Other strains from **Fusobacterium simiae** (2)	Type strain
141487	F. simiae CCUG 2264
142910	F. simiae CCUG 15670, CCUG 2260

Morphology

Colony morphology

46531

Incubation period2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8287	CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
8287	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
8287	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
8287	anaerobe
46531	anaerobe
125439	facultative anaerobe	90.7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	+	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	+	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	+	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68380	alpha-glucosidase	-	3.2.1.20	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	-	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68380	glutamate decarboxylase	+	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	+	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
8287	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Primates
#Host Body-Site	#Oral cavity and airways	#Plaque
#Host Body-Site	#Oral cavity and airways	#Tooth

Isolation

@ref	Sample type
8287	Monkey dental plaque (Macaca arctoides)
46531	Monkey dental plaque (Macaca arctoides)
67770	Monkey dental plaque

Taxonmaps

69479

Global distribution of 16S sequence AB616133 (>99% sequence identity) for Fusobacterium from Microbeatlas

Aquatic Samples	30
Soil Samples	5
Animal Samples	1679
Plant Samples
Total Samples	1714

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8287	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2608929v1 assembly for Fusobacterium simiae DSM 19848	contig	GCA_026089295	855.3	8117144807	855	62.23

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Fusobacterium simiae strain ATCC 33568 16S ribosomal RNA gene, partial sequence	M58685	1466	855
20218	Fusobacterium simiae rRNA small subunit	X55407	1332	855
8287	Fusobacterium simiae strain ATCC 33568 16S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF342838	741	855
67770	Fusobacterium simiae gene for 16S ribosomal RNA, partial sequence, strain: JCM 17465	AB616133	1466	855
124043	Fusobacterium simiae ATCC 33568 gene for 16S rRNA, partial sequence.	LC752355	246	855
124043	Fusobacterium simiae JCM 17465 gene for 16S rRNA, partial sequence.	LC752382	562	855

GC content

@ref	GC-content (mol%)	Method
67770	28	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Fusobacterium simiae DSM 19848
NCBI: GCA_026089295

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	52.20	no
125439	motility	BacteriaNetⓘ	yes	70.50	no
125439	gram_stain	BacteriaNetⓘ	positive	71.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	90.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Fusobacterium simiae DSM 19848
NCBI: GCA_026089295.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	88.91	no
125438	anaerobic	anaerobicⓘ	yes	89.84	yes
125438	aerobic	aerobicⓘ	no	97.19	no
125438	spore-forming	spore-formingⓘ	no	81.39	no
125438	thermophilic	thermophileⓘ	no	91.00	no
125438	flagellated	motile2+ⓘ	no	83.53	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Draft Genomes of Two Fusobacterium simiae Strains.	Zoaiter M, Fournier PE, Houhamdi L.	Microbiol Resour Announc	10.1128/mra.01255-22	2023
Metabolism	Identification and characterization of a novel adhesin unique to oral fusobacteria.	Han YW, Ikegami A, Rajanna C, Kawsar HI, Zhou Y, Li M, Sojar HT, Genco RJ, Kuramitsu HK, Deng CX.	J Bacteriol	10.1128/jb.187.15.5330-5340.2005	2005
	Intergeneric coaggregation of oral Treponema spp. with Fusobacterium spp. and intrageneric coaggregation among Fusobacterium spp.	Kolenbrander PE, Parrish KD, Andersen RN, Greenberg EP.	Infect Immun	10.1128/iai.63.12.4584-4588.1995	1995
	Compilation of small ribosomal subunit RNA structures.	Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R.	Nucleic Acids Res	10.1093/nar/21.13.3025	1993
	Filifactor alocis--involvement in periodontal biofilms.	Schlafer S, Riep B, Griffen AL, Petrich A, Hubner J, Berning M, Friedmann A, Gobel UB, Moter A.	BMC Microbiol	10.1186/1471-2180-10-66	2010
Phylogeny	Are putative periodontal pathogens reliable diagnostic markers?	Riep B, Edesi-Neuss L, Claessen F, Skarabis H, Ehmke B, Flemmig TF, Bernimoulin JP, Gobel UB, Moter A.	J Clin Microbiol	10.1128/jcm.01387-08	2009
Metabolism	Stimulation of epithelial cell matrix metalloproteinase (MMP-2, -9, -13) and interleukin-8 secretion by fusobacteria.	Gursoy UK, Kononen E, Uitto VJ	Oral Microbiol Immunol	10.1111/j.1399-302X.2008.00453.x	2008

References

#8287	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19848
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#46531	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 16798
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Fusobacterium simiae (DSM 19848, ATCC 33568, CCM 3660)

Name and taxonomic classification

Morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_026089295

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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