Fusobacterium periodonticum (DSM 19545, ATCC 33693, CCUG 14345)

Name: Fusobacterium periodonticum (DSM 19545, ATCC 33693, CCUG 14345)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5771

Type strain

Strain Designation EK1-15

Culture col. no. DSM 19545 ATCC 33693 CCUG 14345 JCM 12991 EK1-15 1 more

NCBI tax ID(s) 546275 860

Special Collections DSMZ CCUG JCM KCTC

History DSMZ <- JCM; JCM 12991 <- CCUG; CCUG 14345 <- ATCC; ATCC 33693 <- J. Slots; EK1-15 JCM <-- CCUG 14345 <-- J. Slots <-- ATCC 33693 <-- J. Slots EK1-15.

Links

Fusobacterium periodonticum EK1-15 is an anaerobe bacterium that was isolated from Human periodontitis,17-yr-old male,diabetes.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 44968

ATCC 33693,CCUG 14345,JCM 12991,DSM 19545

@ref 20215

Last LPSN update 2026-05-29 08:26:15

Domain Bacteria

Phylum Fusobacteriota

Class Fusobacteriia

Order Fusobacteriales

Family Fusobacteriaceae

Genus Fusobacterium

Species Fusobacterium periodonticum

Full scientific name Fusobacterium periodonticum Slots et al. 1984

BacDive ID	Other strains from **Fusobacterium periodonticum** (2)	Type strain
153863	F. periodonticum CCUG 51424
153964	F. periodonticum CCUG 51780

Morphology

Colony morphology

46094

Incubation period1 day

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8164	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
8164	CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
8164	positive	growth	37
46094	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
8164	anaerobe
46094	anaerobe
125439	facultative anaerobe	90.62

Spore formation

@ref	Spore formation	Confidence
125439		92.578

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	+	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	+	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68380	alpha-glucosidase	-	3.2.1.20	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	-	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	+	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
8164	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-
8164	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-
8164	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Inflammation	-
#Host	#Human	#Male

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
8164	Human periodontitis,17-yr-old male,diabetes	Homo sapiens	Buffalo, New York	USA	USA	North America
46094	Human periodontitis,17-yr-old male,diabetes	Homo sapiens	Buffalo	USA	USA	North America
67770	Advanced periodontitis lesions of patient with insulin-dependent diabetes mellitus	Homo sapiens

Taxonmaps

69479

Global distribution of 16S sequence HM347071 (>99% sequence identity) for Fusobacterium from Microbeatlas

Aquatic Samples	511
Soil Samples	483
Animal Samples	38777
Plant Samples	231
Total Samples	40002

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8164	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM16047v1 assembly for Fusobacterium periodonticum ATCC 33693	scaffold	GCA_000160475	546275.3	645951848	546275	50.38

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Fusobacterium periodonticum strain ATCC 33693 16S ribosomal RNA gene, partial sequence	FJ196709	825	860
20218	Fusobacterium periodonticum strain ATCC 33693 16S ribosomal RNA gene, partial sequence	GQ301043	1428	860
20218	Fusobacterium periodonticum strain ATCC 33693 16S ribosomal RNA gene, partial sequence	HM347071	1381	860
20218	Fusobacterium periodonticum rRNA small subunit	X55405	1331	860
8164	Fusobacterium periodonticum gene for 16S ribosomal RNA, partial sequence	AB910749	1467	860
124043	Fusobacterium periodonticum ATCC 33693 gene for 16S rRNA, partial sequence.	LC752442	562	860
124043	Fusobacterium periodonticum strain ATCC 33693 16S ribosomal RNA gene, partial sequence internal transcribed spacer 1, complete sequence and 23S ribosomal RNA gene, partial sequence.	AF342839	796	860

GC content

@ref	GC-content (mol%)	Method
67770	28	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM16047v1 assembly for Fusobacterium periodonticum ATCC 33693
BV-BRC: 546275.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	90.62	no
125439	gram_stain	BacteriaNetⓘ	negative	68.58	no
125439	motility	BacteriaNetⓘ	no	63.15	no
125439	spore_formation	BacteriaNetⓘ	no	92.58	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Fusobacterium periodonticum ATCC 33693
PATRIC: 546275.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	87.68	no
125438	anaerobic	anaerobicⓘ	yes	88.64	no
125438	spore-forming	spore-formingⓘ	no	84.25	no
125438	thermophilic	thermophileⓘ	no	94.18	yes
125438	aerobic	aerobicⓘ	no	97.26	yes
125438	flagellated	motile2+ⓘ	no	83.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	The EUCAST Disk Diffusion Method for Antimicrobial Susceptibility Testing of Oral Anaerobes.	Jensen AB, Lau EF, Greve T, Norskov-Lauritsen N.	APMIS	10.1111/apm.70002	2025
	Development of a conditional plasmid for gene deletion in non-model Fusobacterium nucleatum strains.	Zhou P, G C B, Wu C.	Appl Environ Microbiol	10.1128/aem.01816-24	2025
	Use of CRISPR interference for efficient and rapid gene inactivation in Fusobacterium nucleatum.	Zhou P, G C B, Stolte F, Wu C.	Appl Environ Microbiol	10.1128/aem.01665-23	2024
Pathogenicity	HicA Toxin-Based Counterselection Marker for Allelic Exchange Mutations in Fusobacterium nucleatum.	Gc B, Zhou P, Wu C.	Appl Environ Microbiol	10.1128/aem.00091-23	2023
	Lactobacillus acidophilus impairs the establishment of pathogens in a subgingival multispecies biofilm.	Bueno MR, Dudu-Silva G, Macedo TT, Gomes APAP, Rodrigues Oliveira Braga A, Aguiar Silva LD, Bueno-Silva B.	Front Dent Med	10.3389/fdmed.2023.1212773	2023
	Synergism of Fusobacterium periodonticum and N-nitrosamines promote the formation of EMT subtypes in ESCC by modulating Wnt3a palmitoylation.	Sun M, Peng Z, Shen W, Guo X, Liao Y, Huang Y, Ye P, Hu M, Lin Q, Liu R.	Gut Microbes	10.1080/19490976.2024.2391521	2024
	Antimicrobial Activity of Methylene Blue Associated with Photodynamic Therapy: In Vitro Study in Multi-Species Oral Biofilm.	Bueno-Silva B, Parma-Garcia J, Frigo L, Suarez LJ, Macedo TT, Uyeda FH, Melo MARDC, Sacco R, Mourao CF, Feres M, Shibli JA, Figueiredo LC.	Pathogens	10.3390/pathogens13040342	2024
Pathogenicity	Antibacterial Activity of a Bioactive Tooth-Coating Material Containing Surface Pre-Reacted Glass in a Complex Multispecies Subgingival Biofilm.	Tanaka CJ, Rodrigues JA, Pingueiro JMS, Macedo TT, Feres M, Shibli JA, Bueno-Silva B.	Pharmaceutics	10.3390/pharmaceutics15061727	2023
	Fusobacterium nucleatum enhances oxaliplatin resistance in colon cancer by increasing PVT1 expression.	Gao K, Zhang J, Liu C, Yang Y, Wang J, Zhang J, Ma H, Wang F, Zhao L, Wang G.	J Transl Med	10.1186/s12967-025-07226-3	2025
	Evaluation of the Microbial Profile on the Polydioxanone Membrane and the Collagen Membrane Exposed to Multi-Species Subgingival Biofilm: An In Vitro Study.	Cintra Moreira MV, Figueiredo LC, da Cunha Melo MAR, Uyeda FH, da Silva LDA, Macedo TT, Sacco R, Mourao CF, Shibli JA, Bueno-Silva B.	Membranes (Basel)	10.3390/membranes13120907	2023
	Stratification of Fusobacterium nucleatum by local health status in the oral cavity defines its subspecies disease association.	Krieger M, AbdelRahman YM, Choi D, Palmer EA, Yoo A, McGuire S, Kreth J, Merritt J.	Cell Host Microbe	10.1016/j.chom.2024.02.010	2024
	Functional annotation of uncharacterized proteins from Fusobacterium nucleatum: identification of virulence factors.	Rauthan K, Joshi S, Kumar L, Goel D, Kumar S.	Genomics Inform	10.5808/gi.22065	2023
	Propolis, Aloe Vera, Green Tea, Cranberry, Calendula, Myrrha and Salvia Properties against Periodontal Microorganisms.	Figueiredo LC, Freitas Figueiredo N, da Cruz DF, Baccelli GT, Sarachini GE, Bueno MR, Feres M, Bueno-Silva B.	Microorganisms	10.3390/microorganisms10112172	2022
Metabolism	The proteins of Fusobacterium spp. involved in hydrogen sulfide production from L-cysteine.	Basic A, Blomqvist M, Dahlen G, Svensater G.	BMC Microbiol	10.1186/s12866-017-0967-9	2017
	Diagnostic accuracy of Fusobacterium nucleatum IgA and IgG ELISA test in colorectal cancer.	Kurt M, Yumuk Z.	Sci Rep	10.1038/s41598-021-81171-1	2021
	Neutrophil elastase aggravates periodontitis by disrupting gingival epithelial barrier via cleaving cell adhesion molecules.	Hiyoshi T, Domon H, Maekawa T, Tamura H, Isono T, Hirayama S, Sasagawa K, Takizawa F, Tabeta K, Terao Y.	Sci Rep	10.1038/s41598-022-12358-3	2022
Transcriptome	Characterization of Fusobacterium varium Fv113-g1 isolated from a patient with ulcerative colitis based on complete genome sequence and transcriptome analysis.	Sekizuka T, Ogasawara Y, Ohkusa T, Kuroda M.	PLoS One	10.1371/journal.pone.0189319	2017
	Detection of hydrogen cyanide from oral anaerobes by cavity ring down spectroscopy.	Chen W, Roslund K, Fogarty CL, Pussinen PJ, Halonen L, Groop PH, Metsala M, Lehto M.	Sci Rep	10.1038/srep22577	2016
	Microbes translocation from oral cavity to nasopharyngeal carcinoma in patients.	Liao Y, Wu YX, Tang M, Chen YW, Xie JR, Du Y, Wang TM, He YQ, Xue WQ, Zheng XH, Liu QY, Zheng MQ, Jia YJ, Tong XT, Zhou T, Li XZ, Yang DW, Diao H, Jia WH.	Nat Commun	10.1038/s41467-024-45518-2	2024
	Brazilian Red Propolis Is as Effective as Amoxicillin in Controlling Red-Complex of Multispecies Subgingival Mature Biofilm In Vitro.	de Figueiredo KA, da Silva HDP, Miranda SLF, Goncalves FJDS, de Sousa AP, de Figueiredo LC, Feres M, Bueno-Silva B.	Antibiotics (Basel)	10.3390/antibiotics9080432	2020
	Metabolic activity of hydro-carbon-oxo-borate on a multispecies subgingival periodontal biofilm: a short communication.	Shibli JA, Rocha TF, Coelho F, de Oliveira Capote TS, Saska S, Melo MA, Pingueiro JMS, de Faveri M, Bueno-Silva B.	Clin Oral Investig	10.1007/s00784-021-03900-0	2021
	Fusobacterium Species and Subspecies Differentially Affect the Composition and Architecture of Supra- and Subgingival Biofilms Models.	Thurnheer T, Karygianni L, Flury M, Belibasakis GN.	Front Microbiol	10.3389/fmicb.2019.01716	2019
Transcriptome	Gene expression of bacterial collagenolytic proteases in root caries.	Dame-Teixeira N, Parolo CCF, Maltz M, Rup AG, Devine DA, Do T.	J Oral Microbiol	10.1080/20002297.2018.1424475	2018
	Ozone ultrafine bubble water exhibits bactericidal activity against pathogenic bacteria in the oral cavity and upper airway and disinfects contaminated healthcare equipment.	Takizawa F, Domon H, Hiyoshi T, Tamura H, Shimizu K, Maekawa T, Tabeta K, Ushida A, Terao Y.	PLoS One	10.1371/journal.pone.0284115	2023
	Estimation of bacterial hydrogen sulfide production in vitro.	Basic A, Blomqvist S, Carlen A, Dahlen G.	J Oral Microbiol	10.3402/jom.v7.28166	2015
	Fusobacterium nucleatum-triggered neutrophil extracellular traps facilitate colorectal carcinoma progression.	Kong X, Zhang Y, Xiang L, You Y, Duan Y, Zhao Y, Li S, Wu R, Zhang J, Zhou L, Duan L.	J Exp Clin Cancer Res	10.1186/s13046-023-02817-8	2023
Pathogenicity	Effect of smokeless tobacco products on human oral bacteria growth and viability.	Liu M, Jin J, Pan H, Feng J, Cerniglia CE, Yang M, Chen H.	Anaerobe	10.1016/j.anaerobe.2016.10.006	2016
	Mining the Proteome of Fusobacterium nucleatum subsp. nucleatum ATCC 25586 for Potential Therapeutics Discovery: An In Silico Approach.	Habib AM, Islam MS, Sohel M, Mazumder MH, Sikder MO, Shahik SM.	Genomics Inform	10.5808/gi.2016.14.4.255	2016
	Classic vs. Novel Antibacterial Approaches for Eradicating Dental Biofilm as Adjunct to Periodontal Debridement: An Evidence-Based Overview.	Abdulkareem A, Abdulbaqi H, Gul S, Milward M, Chasib N, Alhashimi R.	Antibiotics (Basel)	10.3390/antibiotics11010009	2021
Metabolism	Revealing the bacterial butyrate synthesis pathways by analyzing (meta)genomic data.	Vital M, Howe AC, Tiedje JM.	mBio	10.1128/mbio.00889-14	2014
Enzymology	Quantitative microbiological study of subgingival plaque by real-time PCR shows correlation between levels of Tannerella forsythensis and Fusobacterium spp.	Suzuki N, Yoshida A, Saito T, Kawada M, Nakano Y.	J Clin Microbiol	10.1128/jcm.42.5.2255-2257.2004	2004
Transcriptome	Time-Course Transcriptome Analysis for Drug Repositioning in Fusobacterium nucleatum-Infected Human Gingival Fibroblasts.	Kang W, Jia Z, Tang D, Zhao X, Shi J, Jia Q, He K, Feng Q.	Front Cell Dev Biol	10.3389/fcell.2019.00204	2019
	Intergeneric coaggregation of oral Treponema spp. with Fusobacterium spp. and intrageneric coaggregation among Fusobacterium spp.	Kolenbrander PE, Parrish KD, Andersen RN, Greenberg EP.	Infect Immun	10.1128/iai.63.12.4584-4588.1995	1995
Enzymology	Real-time TaqMan PCR for quantifying oral bacteria during biofilm formation.	Suzuki N, Nakano Y, Yoshida A, Yamashita Y, Kiyoura Y.	J Clin Microbiol	10.1128/jcm.42.8.3827-3830.2004	2004
Metabolism	Identification and characterization of a novel adhesin unique to oral fusobacteria.	Han YW, Ikegami A, Rajanna C, Kawsar HI, Zhou Y, Li M, Sojar HT, Genco RJ, Kuramitsu HK, Deng CX.	J Bacteriol	10.1128/jb.187.15.5330-5340.2005	2005
	Effects of azithromycin, metronidazole, amoxicillin, and metronidazole plus amoxicillin on an in vitro polymicrobial subgingival biofilm model.	Soares GM, Teles F, Starr JR, Feres M, Patel M, Martin L, Teles R.	Antimicrob Agents Chemother	10.1128/aac.04974-14	2015
Metabolism	Lifestyle, dietary factors, and antibody levels to oral bacteria in cancer-free participants of a European cohort study.	Michaud DS, Izard J, Rubin Z, Johansson I, Weiderpass E, Tjonneland A, Olsen A, Overvad K, Boutron-Ruault MC, Clavel-Chapelon F, Dossus L, Kaaks R, Katzke VA, Boeing H, Foerster J, Trichopoulou A, Naska A, Ziara G, Vineis P, Grioni S, Palli D, Tumino R, Mattiello A, Peeters PH, Siersema PD, Barricarte A, Huerta JM, Molina-Montes E, Dorronsoro M, Quiros JR, Duell EJ, Ohlsson B, Jeppsson B, Johansson A, Lif P, Khaw KT, Wareham N, Travis RC, Key TJ, Freisling H, Duarte-Salles T, Stepien M, Riboli E, Bueno-de-Mesquita HB.	Cancer Causes Control	10.1007/s10552-013-0265-2	2013
Genetics	Survey of chimeric IStron elements in bacterial genomes: multiple molecular symbioses between group I intron ribozymes and DNA transposons.	Tourasse NJ, Stabell FB, Kolsto AB.	Nucleic Acids Res	10.1093/nar/gku939	2014
Enzymology	Abilities of the mCP Agar method and CRENAME alpha toxin-specific real-time PCR assay to detect Clostridium perfringens spores in drinking water.	Maheux AF, Berube E, Boudreau DK, Villeger R, Cantin P, Boissinot M, Bissonnette L, Bergeron MG.	Appl Environ Microbiol	10.1128/aem.02791-13	2013
Pathogenicity	Fusobacterium nucleatum Promotes Chemoresistance to Colorectal Cancer by Modulating Autophagy.	Yu T, Guo F, Yu Y, Sun T, Ma D, Han J, Qian Y, Kryczek I, Sun D, Nagarsheth N, Chen Y, Chen H, Hong J, Zou W, Fang JY.	Cell	10.1016/j.cell.2017.07.008	2017
	The vaginal microflora in relation to gingivitis.	Persson R, Hitti J, Verhelst R, Vaneechoutte M, Persson R, Hirschi R, Weibel M, Rothen M, Temmerman M, Paul K, Eschenbach D.	BMC Infect Dis	10.1186/1471-2334-9-6	2009
Enzymology	Polymerase chain reaction-amplified nonradioactive probes for identification of Fusobacterium nucleatum.	Bolstad AI, Jensen HB.	J Clin Microbiol	10.1128/jcm.31.3.528-532.1993	1993
	Plasma antibodies to oral bacteria and risk of pancreatic cancer in a large European prospective cohort study.	Michaud DS, Izard J, Wilhelm-Benartzi CS, You DH, Grote VA, Tjonneland A, Dahm CC, Overvad K, Jenab M, Fedirko V, Boutron-Ruault MC, Clavel-Chapelon F, Racine A, Kaaks R, Boeing H, Foerster J, Trichopoulou A, Lagiou P, Trichopoulos D, Sacerdote C, Sieri S, Palli D, Tumino R, Panico S, Siersema PD, Peeters PH, Lund E, Barricarte A, Huerta JM, Molina-Montes E, Dorronsoro M, Quiros JR, Duell EJ, Ye W, Sund M, Lindkvist B, Johansen D, Khaw KT, Wareham N, Travis RC, Vineis P, Bueno-de-Mesquita HB, Riboli E.	Gut	10.1136/gutjnl-2012-303006	2013
Metabolism	Restriction-modification mediated barriers to exogenous DNA uptake and incorporation employed by Prevotella intermedia.	Johnston CD, Skeete CA, Fomenkov A, Roberts RJ, Rittling SR.	PLoS One	10.1371/journal.pone.0185234	2017
Enzymology	Use of synthetic oligonucleotide DNA probes for identification and direct detection of Bacteroides forsythus in plaque samples.	Moncla BJ, Motley ST, Braham P, Ewing L, Adams TH, Vermeulen NM.	J Clin Microbiol	10.1128/jcm.29.10.2158-2162.1991	1991
Phylogeny	Identification and classification of bacterial Type III toxin-antitoxin systems encoded in chromosomal and plasmid genomes.	Blower TR, Short FL, Rao F, Mizuguchi K, Pei XY, Fineran PC, Luisi BF, Salmond GP.	Nucleic Acids Res	10.1093/nar/gks231	2012
	A highly selective PCR protocol for detecting 16S rRNA genes of the genus Pseudomonas (sensu stricto) in environmental samples.	Widmer F, Seidler RJ, Gillevet PM, Watrud LS, Di Giovanni GD.	Appl Environ Microbiol	10.1128/aem.64.7.2545-2553.1998	1998
Enzymology	Purification and characterization of allophanate hydrolase (AtzF) from Pseudomonas sp. strain ADP.	Shapir N, Sadowsky MJ, Wackett LP.	J Bacteriol	10.1128/jb.187.11.3731-3738.2005	2005
Metabolism	Ability of oral bacteria to degrade fibronectin.	Wikstrom M, Linde A.	Infect Immun	10.1128/iai.51.2.707-711.1986	1986
Genetics	Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586.	Kapatral V, Anderson I, Ivanova N, Reznik G, Los T, Lykidis A, Bhattacharyya A, Bartman A, Gardner W, Grechkin G, Zhu L, Vasieva O, Chu L, Kogan Y, Chaga O, Goltsman E, Bernal A, Larsen N, D'Souza M, Walunas T, Pusch G, Haselkorn R, Fonstein M, Kyrpides N, Overbeek R.	J Bacteriol	10.1128/jb.184.7.2005-2018.2002	2002
	Compilation of small ribosomal subunit RNA structures.	Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R.	Nucleic Acids Res	10.1093/nar/21.13.3025	1993
	Taxonomy, biology, and periodontal aspects of Fusobacterium nucleatum.	Bolstad AI, Jensen HB, Bakken V.	Clin Microbiol Rev	10.1128/cmr.9.1.55	1996
	Filifactor alocis--involvement in periodontal biofilms.	Schlafer S, Riep B, Griffen AL, Petrich A, Hubner J, Berning M, Friedmann A, Gobel UB, Moter A.	BMC Microbiol	10.1186/1471-2180-10-66	2010
Phylogeny	Are putative periodontal pathogens reliable diagnostic markers?	Riep B, Edesi-Neuss L, Claessen F, Skarabis H, Ehmke B, Flemmig TF, Bernimoulin JP, Gobel UB, Moter A.	J Clin Microbiol	10.1128/jcm.01387-08	2009
Metabolism	Stimulation of proteinase and amidase activities in Porphyromonas (Bacteroides) gingivalis by amino acids and dipeptides.	Chen ZX, Potempa J, Polanowski A, Renvert S, Wikstrom M, Travis J.	Infect Immun	10.1128/iai.59.8.2846-2850.1991	1991
Phylogeny	Development of species-specific polymerase chain reaction primers for detection of Fusobacterium periodonticum.	Park SN, Park JY, Kook JK	Microbiol Immunol	10.1111/j.1348-0421.2010.00279.x	2010
Pathogenicity	Helicobacter pylori adheres selectively to Fusobacterium spp.	Andersen RN, Ganeshkumar N, Kolenbrander PE	Oral Microbiol Immunol	10.1111/j.1399-302x.1998.tb00751.x	1998
Genetics	Molecular characterization of a 40-kDa outer membrane protein, FomA, of Fusobacterium periodonticum and comparison with Fusobacterium nucleatum.	Bolstad AI, Hogh BT, Jensen HB	Oral Microbiol Immunol	10.1111/j.1399-302x.1995.tb00151.x	1995
Phylogeny	Fusobacterium periodonticum, a new species from the human oral cavity.	Slots J, Potts TV, Mashimo PA	J Dent Res	10.1177/00220345830620090901	1983

References

#8164	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19545
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#46094	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 14345
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Fusobacterium periodonticum (DSM 19545, ATCC 33693, CCUG 14345)

Name and taxonomic classification

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Physiology and metabolism

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