Fusobacterium nucleatum subsp. polymorphum 555A is an anaerobe, mesophilic prokaryote that was isolated from inflamed gingiva.
anaerobe mesophilic genome sequence 16S sequence
SI-ID 2853
| @ref 20215 |
Last LPSN update
2025-12-16 09:48:09 |
| Domain Fusobacteriati |
| Phylum Fusobacteriota |
| Class Fusobacteriia |
| Order Fusobacteriales |
| Family Fusobacteriaceae |
| Genus Fusobacterium |
| Species Fusobacterium nucleatum subsp. polymorphum |
| Full scientific name Fusobacterium nucleatum subsp. polymorphum (ex Knorr 1922) Dzink et al. 1990 |
| Synonyms (2) |
| BacDive ID | Other strains from Fusobacterium nucleatum subsp. polymorphum (5) | Type strain |
|---|---|---|
| 149574 | F. nucleatum subsp. polymorphum CCUG 37995 | |
| 153965 | F. nucleatum subsp. polymorphum CCUG 51781 | |
| 153981 | F. nucleatum subsp. polymorphum CCUG 51834 | |
| 155419 | F. nucleatum subsp. polymorphum CCUG 57685 | |
| 156263 | F. nucleatum subsp. polymorphum CCUG 60920 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 8851 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive  | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 8851 | PYG MEDIUM (MODIFIED) (DSMZ Medium 104) | Medium recipe at MediaDive | Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 8851 | A51 | A1delta Lan-direct |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68380 | 29016 ChEBI | arginine | - | hydrolysis | from API rID32A |
| 68367 | 17057 ChEBI | cellobiose | - | builds acid from | from API 20A |
| 68367 | 17634 ChEBI | D-glucose | - | builds acid from | from API 20A |
| 68367 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 20A |
| 68380 | 16024 ChEBI | D-mannose | - | fermentation | from API rID32A |
| 68367 | 16024 ChEBI | D-mannose | - | builds acid from | from API 20A |
| 68367 | 65327 ChEBI | D-xylose | - | builds acid from | from API 20A |
| 68367 | 4853 ChEBI | esculin | + | hydrolysis | from API 20A |
| 68367 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20A |
| 68367 | 17754 ChEBI | glycerol | - | builds acid from | from API 20A |
| 68367 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 20A |
| 68367 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 20A |
| 68367 | 17716 ChEBI | lactose | - | builds acid from | from API 20A |
| 68367 | 17306 ChEBI | maltose | - | builds acid from | from API 20A |
| 68367 | 6731 ChEBI | melezitose | - | builds acid from | from API 20A |
| 68380 | 16634 ChEBI | raffinose | - | fermentation | from API rID32A |
| 68367 | 16634 ChEBI | raffinose | - | builds acid from | from API 20A |
| 68367 | 17814 ChEBI | salicin | - | builds acid from | from API 20A |
| 68367 | 30911 ChEBI | sorbitol | - | builds acid from | from API 20A |
| 68367 | 17992 ChEBI | sucrose | - | builds acid from | from API 20A |
| 68367 | 27082 ChEBI | trehalose | - | builds acid from | from API 20A |
| 68380 | 27897 ChEBI | tryptophan | + | energy source | from API rID32A |
| 68367 | 27897 ChEBI | tryptophan | + | energy source | from API 20A |
| 68367 | 16199 ChEBI | urea | - | hydrolysis | from API 20A |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68380 | alanine arylamidase | - | 3.4.11.2 | from API rID32A |
| 68380 | alkaline phosphatase | - | 3.1.3.1 | from API rID32A |
| 68380 | alpha-arabinosidase | - | 3.2.1.55 | from API rID32A |
| 68380 | alpha-fucosidase | - | 3.2.1.51 | from API rID32A |
| 68380 | alpha-galactosidase | - | 3.2.1.22 | from API rID32A |
| 68380 | arginine dihydrolase | - | 3.5.3.6 | from API rID32A |
| 68380 | beta-galactosidase | - | 3.2.1.23 | from API rID32A |
| 68380 | beta-Galactosidase 6-phosphate | - | from API rID32A | |
| 68380 | beta-glucosidase | - | 3.2.1.21 | from API rID32A |
| 68367 | beta-glucosidase | + | 3.2.1.21 | from API 20A |
| 68380 | beta-glucuronidase | - | 3.2.1.31 | from API rID32A |
| 68367 | catalase | - | 1.11.1.6 | from API 20A |
| 68367 | gelatinase | - | from API 20A | |
| 68380 | glutamyl-glutamate arylamidase | - | from API rID32A | |
| 68380 | glycin arylamidase | - | from API rID32A | |
| 68380 | histidine arylamidase | - | from API rID32A | |
| 68380 | L-arginine arylamidase | - | from API rID32A | |
| 68380 | leucine arylamidase | - | 3.4.11.1 | from API rID32A |
| 68380 | leucyl glycin arylamidase | - | 3.4.11.1 | from API rID32A |
| 68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API rID32A |
| 68380 | phenylalanine arylamidase | - | from API rID32A | |
| 68380 | proline-arylamidase | - | 3.4.11.5 | from API rID32A |
| 68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API rID32A |
| 68380 | serine arylamidase | - | from API rID32A | |
| 68380 | tryptophan deaminase | + | 4.1.99.1 | from API rID32A |
| 68380 | tyrosine arylamidase | - | from API rID32A | |
| 68367 | urease | - | 3.5.1.5 | from API 20A |
| @ref | URE | ADH (Arg) | alpha GAL | beta GAL | beta-Galactosidase 6-phosphatebeta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta-N-Acetyl-beta-glucosaminidasebeta NAG | MNE | RAF | GDC | alpha FUC | Reduction of nitrateNIT | IND | PAL | L-arginine arylamidaseArgA | ProA | LGA | Phenylalanine arylamidasePheA | Leucine arylamidaseLeuA | PyrA | Tyrosine arylamidaseTyrA | Alanine arylamidaseAlaA | Glycin arylamidaseGlyA | Histidine arylamidaseHisA | Glutamyl-glutamate arylamidaseGGA | Serine arylamidaseSerA | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8851 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| 8851 | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| 8851 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| 8851 | + | - | - | - | - | +/- | - | - | - | - | - | - | + | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| 8851 | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| 8851 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| 8851 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - |
Global distribution of 16S sequence GQ301039 (>99% sequence identity) for Fusobacterium from Microbeatlas 
 Aquatic Samples |
197 |
 Soil Samples |
65 |
 Animal Samples |
11939 |
 Plant Samples |
64 |
| Total Samples | 12265 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|
| 124043 | ASM3532094v1 assembly for Fusobacterium polymorphum NCTC 10562 | complete | GCA_035320945   | 76857.480  | 76857 | 99.5 | |
| 66792 | NCTC10562 assembly for Fusobacterium polymorphum NCTC10562 | complete | GCA_001457555 | 76857.9 | 76857 | 99.41 | |
| 124043 | ASM3790062v1 assembly for Fusobacterium polymorphum ATCC 10953 | complete | GCA_037900625 | 393480 | 98.74 | | |
| 124043 | Fn10953 assembly for Fusobacterium polymorphum ATCC 10953 | complete | GCA_050920725 | 393480 | 98.22 | | |
| 66792 | ASM15362v1 assembly for Fusobacterium polymorphum ATCC 10953 | chromosome | GCA_000153625 | 393480.8 | 393480 | 86.66 | |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Fusobacterium nucleatum subsp. polymorphum strain ATCC 10953 16S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, complete sequence; and 23S ribosomal RNA gene, partial sequence | AF342832 | 742 | | 393480 | |
| 20218 | Fusobacterium nucleatum subsp. polymorphum ATCC 10953 16S ribosomal RNA gene, partial sequence | GQ301039 | 1428 |  | 393480 | |
| 20218 | Fusobacterium nucleatum subsp. polymorphum ATCC 10953 16S ribosomal RNA gene, partial sequence | HM347074 | 1380 | | 393480 | |
| 20218 | Fusobacterium nucleatum subsp. polymorphum small subunit ribosomal RNA | X55402 | 1331 | | 393480 | |
| 8851 | Fusobacterium nucleatum subsp. polymorphum 16S ribosomal RNA gene, partial sequence | AF287812 | 1442 | | 393480 | |
| 67770 | Fusobacterium nucleatum subsp. polymorphum gene for 16S rRNA, partial sequence, strain: JCM 12990 | AB550231 | 1467 | | 393480 |
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| Characterisation of novel Fusobacterium nucleatum bacteriophages and their efficacy in disrupting pathogenic dual-species biofilms. | Kabwe M, Tucci J, Dashper S, Binte Mohamed Yakob Adil SS, Petrovski S. | J Oral Microbiol | 10.1080/20002297.2025.2584952 | 2025 | |
| Direct coupling of lactate oxidation with butyryl-CoA formation via a canonical electron transfer flavoprotein in Fusobacterium nucleatum. | Do LTM, Godin R, Wolthers KR. | J Biol Chem | 10.1016/j.jbc.2025.110796 | 2025 | |
| Serum IgG titer findings for Fusobacterium nucleatum associated with clinical outcome following surgery in patients with esophageal squamous cell carcinoma. | Yoshikawa T, Nishi H, Emi M, Hamai Y, Ibuki Y, Kurokawa T, Hirohata R, Ohsawa M, Kitasaki N, Komatsuzawa H, Kawaguchi H, Okada M. | PLoS One | 10.1371/journal.pone.0336219 | 2025 | |
| Microbial Coaggregation in the Oral Cavity: Molecular Interactions and Current Insights. | Oogai Y, Tanaka Y, Nakata M. | Int J Mol Sci | 10.3390/ijms262110552 | 2025 | |
| The rise and evolving role of Fusobacterium nucleatum subspecies. | Wolf M, Steinberg T, Scholz KJ, Kruse A, Rezasoltani S, Conrads G, Al-Ahmad A, Cieplik F. | Curr Res Microb Sci | 10.1016/j.crmicr.2025.100414 | 2025 | |
| The antibacterial and antibiofilm role of cannabidiol against periodontopathogenic bacteria. | Santos ALO, Santiago MB, Silva NBS, Souza SL, Almeida JMD, Martins CHG. | J Appl Microbiol | 10.1093/jambio/lxae316 | 2025 | |
| Development of a conditional plasmid for gene deletion in non-model Fusobacterium nucleatum strains. | Zhou P, G C B, Wu C. | Appl Environ Microbiol | 10.1128/aem.01816-24 | 2025 | |
| New Electron-Transfer Chain to a Flavodiiron Protein in Fusobacterium nucleatum Couples Butyryl-CoA Oxidation to O2 Reduction. | Bystrom LT, Wolthers KR. | Biochemistry | 10.1021/acs.biochem.4c00279 | 2024 | |
| The outer membrane autotransporters Fap2 and CmpA facilitate specific coaggregation between Fusobacterium nucleatum and Aggregatibacter actinomycetemcomitans serotypes b and d. | Tanaka Y, Oogai Y, Matsumoto A, Noguchi K, Nakata M. | Appl Environ Microbiol | 10.1128/aem.01132-25 | 2025 | |
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| Investigating the Impact of Fusobacterium nucleatum on Oxidative Stress, Chemoresistance, and Inflammation in Inflammatory Bowel Disease and Colorectal Cancer: Rationale and Design of a Clinical Trial | Consolo P, Giorgi C, Crisafulli C, Fiorica F, Pinton P, Maurea N, Missiroli S, Quagliariello V, Mantoan B, Ottaiano A, Pellicano G, Orru G, Scano A, Cacciola I, Pollicino T, Di Mauro G, Berretta S, Bignucolo A, Toscano E, Ciappina G, Berretta M. | Int J Mol Sci | 2025 | | |
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| Porphyromonas gingivalis and Fusobacterium nucleatum synergistically strengthen the effect of promoting oral squamous cell carcinoma progression | Song X, Wang J, Gu Z, Qiu X, Yuan M, Ke H, Deng R. | Infect Agent Cancer | 2025 | | |
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| The Relationship Between the Growth of Fusobacterium nucleatum ATCC 25586 in Glucose-Enriched Media and Protein Activity through Fourier Transform Infrared (FTIR) | Saputri D, Muhammad Alibasyah Z, Nuzulul Ismi S, Arfirosa A. | Rep Biochem Mol Biol | 2024 | | |
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| Review on antibacterial flavonoids from genus Erythrina: Structure-activity relationship and mode of action. | Herlina T, Rizaldi Akili AW, Nishinarizki V, Hardianto A, Latip JB. | Heliyon | 10.1016/j.heliyon.2024.e41395 | 2025 | |
| Oral Pathobiont-Derived Outer Membrane Vesicles in the Oral-Gut Axis. | Catalan EA, Seguel-Fuentes E, Fuentes B, Aranguiz-Varela F, Castillo-Godoy DP, Rivera-Asin E, Bocaz E, Fuentes JA, Bravo D, Schinnerling K, Melo-Gonzalez F. | Int J Mol Sci | 10.3390/ijms252011141 | 2024 | |
| New Insights into Mucosa-Associated Microbiota in Paired Tumor and Non-Tumor Adjacent Mucosal Tissues in Colorectal Cancer Patients. | Gonzalez A, Fullaondo A, Navarro D, Rodriguez J, Tirnauca C, Odriozola A. | Cancers (Basel) | 10.3390/cancers16234008 | 2024 | |
| Fusobacterium nucleatum subsp. nucleatum RadD binds Siglec-7 and inhibits NK cell-mediated cancer cell killing. | Galaski J, Rishiq A, Liu M, Bsoul R, Bergson A, Lux R, Bachrach G, Mandelboim O. | iScience | 10.1016/j.isci.2024.110157 | 2024 | |
| A randomised, double-blind clinical study into the effect of zinc citrate trihydrate toothpaste on oral plaque microbiome ecology and function. | Adams SE, Cawley AK, Arnold D, Hoptroff MJ, Slomka V, Matheson JR, Marriott RE, Gemmell MR, Marsh PD. | Sci Rep | 10.1038/s41598-025-92545-0 | 2025 | |
| Co-Culture of P. gingivalis and F. nucleatum Synergistically Elevates IL-6 Expression via TLR4 Signaling in Oral Keratinocytes. | Yanez L, Soto C, Tapia H, Pacheco M, Tapia J, Osses G, Salinas D, Rojas-Celis V, Hoare A, Quest AFG, Diaz-Elizondo J, Perez-Donoso JM, Bravo D. | Int J Mol Sci | 10.3390/ijms25073611 | 2024 | |
| Synergistic induction of PGE2 by oral pathogens and TNF promotes gingival fibroblast-driven stromal-immune cross-talk in periodontitis. | Nieboga E, Schuster A, Drapala DM, Melnykova M, Gut A, Lipska W, Kwitniewski M, Migaczewski M, Czesnikiewicz-Guzik M, Kaczmarzyk T, Potempa J, Grabiec AM. | mBio | 10.1128/mbio.00046-25 | 2025 | |
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BacDive in 2025: the core database for prokaryotic strain data
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