Name: Fangia hongkongensis UST040201-002
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5754

Type strain:

Species: Fangia hongkongensis

Strain Designation: UST040201-002

Culture col. no.: DSM 21703, JCM 14605, NRRL B-41860

Strain history: K. W. K. Lau UST040201-002.

NCBI tax ID(s): 1089439 (strain), 270495 (species)

SI-ID 319372

JCM 14605, NRRL B-41860, DSM 21703

Section

Fangia hongkongensis UST040201-002 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater at outlet of sand filter.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Beggiatoales*
	Family	*Fastidiosibacteraceae*
	Genus	*Fangia*
	Species	**Fangia hongkongensis**
	Full Scientific Name (LPSN)	Fangia hongkongensis Lau et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32223]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %97.449

[Ref.: #32223]	Cell length	1.1 µm

[Ref.: #32223]	Cell width	0.525 µm

[Ref.: #32223]	Cell shape	rod-shaped

[Ref.: #32223]	Motility	no

[Ref.: #32223]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15826]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)

[Ref.: #15826]

Culture medium growth

[Ref.: #15826]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15826]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15826]	growth	28 °C
[Ref.: #32223]	growth	16-40 °C
[Ref.: #32223]	optimum	31.5 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #32223]			optimum	5.85
[Ref.: #32223]			growth	4.9-8.8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32223]

Oxygen tolerance

aerobe

[Ref.: #32223]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %96.235
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32223]		NaCl		growth	0.4-7.5	%
[Ref.: #32223]		NaCl		optimum	2.5	%

[Ref.: #32223]	Observation	aggregates in clumps
[Ref.: #67770]	Observation	quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32223]	gelatin ChEBI	+	carbon source
[Ref.: #32223]	glucose ChEBI	+	carbon source
[Ref.: #32223]	maltose ChEBI	+	carbon source
[Ref.: #32223]	sucrose ChEBI	+	carbon source
[Ref.: #32223]	tween 20 ChEBI	+	carbon source
[Ref.: #32223]	tween 40 ChEBI	+	carbon source
[Ref.: #32223]	tween 60 ChEBI	+	carbon source
[Ref.: #32223]	tween 80 ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #32223]	acid phosphatase	+	3.1.3.2
[Ref.: #32223]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32223]	catalase	+	1.11.1.6
[Ref.: #32223]	cytochrome oxidase	+	1.9.3.1
[Ref.: #32223]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15826]	Sample type/isolated from	seawater at outlet of sand filter
[Ref.: #15826]	Geographic location (country and/or sea, region)	Port Shelter, Hong Kong
[Ref.: #15826]	Country	China
[Ref.: #15826]	Country ISO 3 Code	CHN
[Ref.: #15826]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Seawater at the outlet of a sandfilter in Port Shelter
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hong Kong SAR
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB176554 (>99% sequence identity) for Fangia hongkongensis subclade from Microbeatlas

Aquatic Samples	2915
Soil Samples	60
Animal Samples	139
Plant Samples	7
Total Samples	3121

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15826]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15826]	Fangia hongkongensis gene for 16S rRNA, partial sequence	AB176554	1515	GenBank ENA	270495 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Fangia hongkongensis FSC776 = DSM 21703	GCA_000379445	scaffold	GenBank ENA	1089439 tax ID
[Ref.: #66792]	Fangia hongkongensis DSM 21703	1121876.3	wgs	PATRIC	1089439 tax ID	*
[Ref.: #66792]	Fangia hongkongensis DSM 21703	2515154119	draft	JGI IMG/M	1089439 tax ID	*

[Ref.: #32223]	GC-content	54 mol%
[Ref.: #67770]	GC-content	53.5-54.3 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Fangia hongkongensis FSC776 = DSM 21703 DSM 21703 NCBI: GCA_000379445.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Fangia hongkongensis DSM 21703 PATRIC: 1121876.3
[Ref.: #69480]	motile	no	80.193	no
[Ref.: #69480]	flagellated	no	93.518	yes
[Ref.: #69480]	gram-positive	no	97.449	yes
[Ref.: #69480]	anaerobic	no	97.419	no
[Ref.: #69480]	halophile	no	58.719	no
[Ref.: #69480]	spore-forming	no	96.235	yes
[Ref.: #69480]	thermophile	no	97.615	yes
[Ref.: #69480]	glucose-util	yes	90.091	yes
[Ref.: #69480]	aerobic	no	53.609	no
[Ref.: #69480]	glucose-ferment	no	71.183	no

Availability in culture collections External links

[Ref.: #15826]

Culture collection no.

DSM 21703, JCM 14605, NRRL B-41860

[Ref.: #75233]

SI-ID 319372

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Fastidiosibacter lacustris gen. nov., sp. nov., isolated from a lake water sample, and proposal of Fastidiosibacteraceae fam. nov. within the order Thiotrichales.	Xiao M, Salam N, Liu L, Jiao JY, Zheng ML, Wang J, Li S, Chen C, Li WJ, Qu PH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002510	2017	*
Phylogeny	Cysteiniphilum litorale gen. nov., sp. nov., isolated from coastal seawater.	Liu L, Salam N, Jiao JY, E SM, Chen C, Fang BZ, Xiao M, Li M, Li WJ, Qu PH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001917	2017	*
Phylogeny	Fangia hongkongensis gen. nov., sp. nov., a novel gammaproteobacterium of the order Thiotrichales isolated from coastal seawater of Hong Kong.	Lau KWK, Ren J, Fung MC, Woo PCY, Yuen KY, Chan KKM, Qian PY, Wong PK, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.65156-0	2007	*

References

#15826

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21703

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32223

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28465 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75233

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID319372.1 )

#28465

IJSEM 2665 2007 ( DOI 10.1099/ijs.0.65156-0 , PubMed 17978237 )

* These data were automatically processed and therefore are not curated

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Fangia hongkongensis FSC776 = DSM 21703 DSM 21703

Fangia hongkongensis DSM 21703

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