Name: Imtechella halotolerans K1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5746

Type strain:

Species: Imtechella halotolerans

Strain Designation: K1

Culture col. no.: DSM 24931, JCM 17677, MTCC 11055

Strain history: P. Anil Kumar K1.

NCBI tax ID(s): 1165090 (species)

SI-ID 377732

LMG 26483, JCM 17677, DSM 24931

Section

Imtechella halotolerans K1 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from estuarine water.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Imtechella*
	Species	**Imtechella halotolerans**
	Full Scientific Name (LPSN)	Imtechella halotolerans Surendra et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30541]	Gram stain	negative

[Ref.: #30541]	Cell length	1.5 µm

[Ref.: #30541]	Cell width	0.6 µm

[Ref.: #30541]	Cell shape	rod-shaped

[Ref.: #30541]	Motility	no

[Ref.: #17802]

Incubation period

8-14 days

[Ref.: #30541]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #30541]	growth	20-45 °C
[Ref.: #30541]	optimum	33.5 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #30541]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30541]			optimum	7.5
[Ref.: #30541]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30541]

Oxygen tolerance

aerobe

[Ref.: #30541]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30541]		NaCl		growth	0-12	%
[Ref.: #30541]		NaCl		optimum	3	%

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30541]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #30541]	acetate ChEBI	+	carbon source
[Ref.: #30541]	alanine ChEBI	+	carbon source
[Ref.: #30541]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #30541]	asparagine ChEBI	+	carbon source
[Ref.: #30541]	aspartate ChEBI	+	carbon source
[Ref.: #30541]	dextrin ChEBI	+	carbon source
[Ref.: #30541]	DL-carnitine ChEBI	+	carbon source
[Ref.: #30541]	esculin ChEBI	+	hydrolysis
[Ref.: #30541]	glutamate ChEBI	+	carbon source
[Ref.: #30541]	glycogen ChEBI	+	carbon source
[Ref.: #30541]	leucine ChEBI	+	carbon source
[Ref.: #30541]	ornithine ChEBI	+	carbon source
[Ref.: #30541]	proline ChEBI	+	carbon source
[Ref.: #30541]	propionate ChEBI	+	carbon source
[Ref.: #30541]	serine ChEBI	+	carbon source
[Ref.: #30541]	succinate ChEBI	+	carbon source
[Ref.: #30541]	threonine ChEBI	+	carbon source
[Ref.: #30541]	thymidine ChEBI	+	carbon source
[Ref.: #30541]	uridine ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #30541]		cytochrome oxidase	+	1.9.3.1
[Ref.: #30541]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17802]	Sample type/isolated from	estuarine water
[Ref.: #17802]	Geographic location (country and/or sea, region)	Kerala, Kochi
[Ref.: #17802]	Country	India
[Ref.: #17802]	Country ISO 3 Code	IND
[Ref.: #17802]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Estuarine water at Kochi
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kerala
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Brackish
#Environmental	#Aquatic	#Estuary

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR774044 (>99% sequence identity) for Imtechella halotolerans subclade from Microbeatlas

Aquatic Samples	606
Soil Samples	43
Animal Samples	1069
Plant Samples	6
Total Samples	1724

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17802]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17802]	Imtechella halotolerans K1 partial 16S rRNA gene, type strain K1T	FR774044	1435	ENA	946077 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Imtechella halotolerans K1	GCA_000260835	contig	GenBank	946077 tax ID
[Ref.: #66792]	Imtechella halotolerans K1	946077.8	wgs	PATRIC	946077 tax ID	*
[Ref.: #66792]	Imtechella halotolerans K1	2534681666	draft	JGI IMG/M	946077 tax ID	*
[Ref.: #66792]	Imtechella halotolerans JCM 17677	GCA_028743515	complete	GenBank	1165090 tax ID	*

[Ref.: #17802]	GC-content	46.1 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #30541]	GC-content	46.1 mol%
[Ref.: #17802]	GC-content	35.5 mol%	sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Imtechella halotolerans JCM 17677 NCBI: GCA_028743515.1
[Ref.: #69480]	motile	no	91.073	no
[Ref.: #69480]	flagellated	no	94.95	no
[Ref.: #69480]	gram-positive	no	97.458	yes
[Ref.: #69480]	anaerobic	no	99.446	yes
[Ref.: #69480]	aerobic	yes	80.839	no
[Ref.: #69480]	halophile	no	74.168	no
[Ref.: #69480]	spore-forming	no	96.434	yes
[Ref.: #69480]	glucose-ferment	no	88.94	no
[Ref.: #69480]	thermophile	no	99.279	yes
[Ref.: #69480]	glucose-util	yes	83.182	no

Availability in culture collections External links

[Ref.: #17802]

Culture collection no.

DSM 24931, JCM 17677, MTCC 11055

[Ref.: #75225]

SI-ID 377732

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Imtechella halotolerans gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from estuarine water.	Surendra V, Bhawana P, Suresh K, Srinivas TNR, Anil Kumar P	Int J Syst Evol Microbiol	10.1099/ijs.0.038356-0	2011	*

References

#17802

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24931

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30541

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26872 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75225

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID377732.1 )

#26872

IJSEM 2624 2012 ( DOI 10.1099/ijs.0.038356-0 , PubMed 22199208 )

* These data were automatically processed and therefore are not curated

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Imtechella halotolerans JCM 17677

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