Name: Flagellimonas flava A11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5744

Type strain:

Species: Flagellimonas flava

Strain Designation: A11

Culture col. no.: DSM 22638, KCTC 22665

Strain history: <- B.-J. Yoon, Jeju National Univ., Rep. of Korea; A11T

NCBI tax ID(s): 570519 (species)

SI-ID 398834

DSM 22638

Section

Flagellimonas flava A11 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from marine sponge Halichondria oshoro.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flagellimonas*
	Species	**Flagellimonas flava**
	Full Scientific Name (LPSN)	Flagellimonas flava (Yoon and Oh 2012) Choi et al. 2018

	Synonym	Allomuricauda flava
	Synonym	Spongiibacterium flavum
	Synonym	Muricauda flava

Information on morphological and physiological properties Morphology

[Ref.: #29944]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.978

[Ref.: #29944]	Cell length	2.25 µm

[Ref.: #29944]	Cell width	0.4 µm

[Ref.: #29944]	Cell shape	rod-shaped

[Ref.: #29944]	Motility	no

[Ref.: #29944]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16443]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #16443]

Culture medium growth

[Ref.: #16443]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16443]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16443]	growth	28 °C
[Ref.: #29944]	growth	20-35 °C
[Ref.: #29944]	optimum	30 °C

[Ref.: #16443]	Temperature range	mesophilic
[Ref.: #29944]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29944]			optimum	7.5
[Ref.: #29944]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29944]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29944]		NaCl		growth	1-6	%
[Ref.: #29944]		NaCl		optimum	2.50	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29944]	esculin ChEBI	+	hydrolysis
[Ref.: #29944]	glucose ChEBI	+	carbon source
[Ref.: #29944]	malate ChEBI	+	carbon source
[Ref.: #29944]	mannitol ChEBI	+	carbon source
[Ref.: #29944]	mannose ChEBI	+	carbon source
[Ref.: #29944]	N-acetylglucosamine ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #29944]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29944]	alpha-galactosidase	+	3.2.1.22
[Ref.: #29944]	catalase	+	1.11.1.6
[Ref.: #29944]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29944]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16443]	Sample type/isolated from	marine sponge Halichondria oshoro
[Ref.: #16443]	Host species	Halichondria oshoro
[Ref.: #16443]	Geographic location (country and/or sea, region)	Jeju Island, coastal area (33° 29.41' N 126° 25.48' E)
[Ref.: #16443]	Country	Republic of Korea
[Ref.: #16443]	Country ISO 3 Code	KOR
[Ref.: #16443]	Continent	Asia
[Ref.: #16443]	Geographic location	33.4902°/126.4250°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Porifera (Sponges)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16443]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16443]	Spongiibacterium flavum strain A11 16S ribosomal RNA gene, partial sequence	FJ348473	1382	ENA	570519 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Allomuricauda flava DSM 22638	GCA_900129665	contig	GenBank	570519 tax ID	*
[Ref.: #66792]	Spongiibacterium flavum strain DSM 22638	570519.5	wgs	PATRIC	570519 tax ID	*
[Ref.: #66792]	Flagellimonas flava DSM 22638	2617270824	draft	JGI IMG/M	570519 tax ID	*

[Ref.: #16443]	GC-content	41.7 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #29944]	GC-content	41.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Spongiibacterium flavum strain DSM 22638 PATRIC: 570519.5
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Spongiibacterium flavum strain DSM 22638 PATRIC: 570519.5
[Ref.: #69480]	gram-positive	no	98.104	yes
[Ref.: #69480]	anaerobic	no	99.23	no
[Ref.: #69480]	halophile	no	73.959	no
[Ref.: #69480]	spore-forming	no	96.476	no
[Ref.: #69480]	glucose-util	yes	88.434	yes
[Ref.: #69480]	thermophile	no	98.138	yes
[Ref.: #69480]	flagellated	no	96.089	yes
[Ref.: #69480]	motile	no	88.732	yes
[Ref.: #69480]	aerobic	yes	86.636	yes
[Ref.: #69480]	glucose-ferment	no	89.273	no

Availability in culture collections External links

[Ref.: #16443]

Culture collection no.

DSM 22638, KCTC 22665

[Ref.: #75223]

SI-ID 398834

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Muricauda onchidii sp. nov., isolated from a marine invertebrate from South China Sea, and transfers of Flagellimonas algicola, Flagellimonas pacifica and Flagellimonas maritima to Muricauda algicola comb. nov., Muricauda parva nom. nov. and Muricauda aurantiaca nom. nov., respectively, and emended description of the genus Muricauda.	Liang J, Yin Q, Zheng X, Wang Y, Song ZM, Zhang Y, Hao L, Xu Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004982	2021	*
Phylogeny	Flagellimonas algicola sp. nov., Isolated from a Marine Red Alga, Asparagopsis taxiformis.	Kim J, Kim KH, Chun BH, Khan SA, Jeon CO	Curr Microbiol	10.1007/s00284-019-01821-6	2019	*
Phylogeny	Flagellimonas aquimarina sp. nov., and transfer of Spongiibacterium flavum Yoon and Oh 2012 and S. pacificum Gao et al. 2015 to the genus Flagellimonas Bae et al. 2007 as Flagellimonas flava comb. nov. and F. pacifica comb. nov., respectively.	Choi S, Lee JH, Kang JW, Choe HN, Seong CN	Int J Syst Evol Microbiol	10.1099/ijsem.0.002975	2018	*
Phylogeny	Spongiibacterium flavum gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from the marine sponge Halichondria oshoro, and emended descriptions of the genera Croceitalea and Flagellimonas.	Yoon BJ, Oh DC	Int J Syst Evol Microbiol	10.1099/ijs.0.027243-0	2011	*

References

#16443

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22638

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29944

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26313 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75223

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398834.1 )

#26313

IJSEM 1158 2012 ( DOI 10.1099/ijs.0.027243-0 , PubMed 21724954 )

* These data were automatically processed and therefore are not curated

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Spongiibacterium flavum strain DSM 22638

Spongiibacterium flavum strain DSM 22638

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