Algibacter pectinivorans (DSM 25730, JCM 17107, KACC 14153)

Name: Algibacter pectinivorans (DSM 25730, JCM 17107, KACC 14153)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5743

Type strain

Strain Designation JC2675

Culture col. no. DSM 25730 JCM 17107 KACC 14153 JC2675

NCBI tax ID(s) 870482

Special Collections DSMZ JCM

History <- S.-W. Kwon, KACC; JC2675 <- J.S. Chun, Seoul Natl. Univ., Republic of Korea J. Chun JC2675.

Links

Algibacter pectinivorans JC2675 is a bacterium that was isolated from seawater sample.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398914

JCM 17107,DSM 25730

@ref 20215

Last LPSN update 2026-02-09 11:19:02

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Algibacter

Species Algibacter pectinivorans

Full scientific name Algibacter pectinivorans (Yi et al. 2011) Park et al. 2013

Synonyms (1)

Pontirhabdus pectinivorans

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	91
125438	96.375	negative
125439	99.5	negative

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
18100	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
18100	positive	growth	25
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	90.9

Spore formation

@ref	Spore formation	Confidence
125438		94.795
125439		99.3

Observation

67770

Observationquinones: MK-6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
18100	seawater sample	Jeju Island	Republic of Korea	KOR	Asia
67770	Seawater from Jeju Island		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence HM475134 (>99% sequence identity) for Algibacter pectinivorans subclade from Microbeatlas

Aquatic Samples	1134
Soil Samples	28
Animal Samples	126
Plant Samples	69
Total Samples	1357

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18100	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2615840709 annotated assembly for Algibacter pectinivorans DSM 25730	scaffold	GCA_900112595	870482.7	2615840709	870482	74.65

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18100	Algibacter pectinivorans strain JC2675 from South Korea 16S ribosomal RNA gene, partial sequence	HM475134	1442		870482

GC content

@ref	GC-content (mol%)	Method
67770	30	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Algibacter pectinivorans DSM 25730
NCBI: GCA_900112595

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.30	no
125439	motility	BacteriaNetⓘ	no	70.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	90.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Algibacter pectinivorans strain DSM 25730
PATRIC: 870482.7

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.38	no
125438	anaerobic	anaerobicⓘ	no	95.58	no
125438	aerobic	aerobicⓘ	yes	88.74	no
125438	spore-forming	spore-formingⓘ	no	94.80	no
125438	thermophilic	thermophileⓘ	no	96.93	yes
125438	flagellated	motile2+ⓘ	no	91.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algibacter amylolyticus sp. nov., isolated from intertidal sediment.	Zhang DC, Wu J, Neuner K, Yao J, Margesin R	Int J Syst Evol Microbiol	10.1099/ijs.0.000134	2015
Phylogeny	Algibacter aquimarinus sp. nov., isolated from a marine environment, and reclassification of Pontirhabdus pectinivorans as Algibacter pectinivorans comb. nov.	Park SC, Hwang YM, Choe HN, Baik KS, Kim H, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.045815-0	2012
Phylogeny	Marinivirga aestuarii gen. nov., sp. nov., a member of the family Flavobacteriaceae, isolated from marine environments, and emended descriptions of the genera Hyunsoonleella, Jejuia and Pontirhabdus and the species Hyunsoonleella jejuensis, Jejuia pallidilutea and Pontirhabdus pectinivorans.	Park SC, Choe HN, Hwang YM, Baik KS, Kim SN, Lee YS, Jung JS, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.042341-0	2012
Phylogeny	Pontirhabdus pectinivorans gen. nov., sp. nov., isolated from seawater.	Yi H, Cho JC, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.027441-0	2010

References

#18100	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25730
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Algibacter pectinivorans (DSM 25730, JCM 17107, KACC 14153)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900112595

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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