Name: Algibacter pectinivorans JC2675
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5743

Type strain:

Species: Algibacter pectinivorans

Strain Designation: JC2675

Culture col. no.: DSM 25730, JCM 17107, KACC 14153

Strain history: J. Chun JC2675.

NCBI tax ID(s): 870482 (species)

Section

Algibacter pectinivorans JC2675 is a mesophilic bacterium that was isolated from seawater sample.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Algibacter*
	Species	**Algibacter pectinivorans**
	Full Scientific Name (PNU)	Algibacter pectinivorans (Yi et al. 2011) Park et al. 2013

Synonym

Pontirhabdus pectinivorans

Information on morphological and physiological properties Morphology

[Ref.: #69480]

Gram stain

negative Confidence in %99.975

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18100]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #18100]

Culture medium growth

[Ref.: #18100]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #18100]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18100]			growth	25 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #18100]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

[Ref.: #67770]

Observation

quinones: MK-6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18100]	Sample type/isolated from	seawater sample
[Ref.: #18100]	Geographic location (country and/or sea, region)	Jeju Island
[Ref.: #18100]	Country	Republic of Korea
[Ref.: #18100]	Country ISO 3 Code	KOR
[Ref.: #18100]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Seawater from Jeju Island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HM475134 (>99% sequence identity) for Algibacter pectinivorans subclade from Microbeatlas

Aquatic Samples	1134
Soil Samples	28
Animal Samples	126
Plant Samples	69
Total Samples	1357

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18100]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18100]	Algibacter pectinivorans strain JC2675 from South Korea 16S ribosomal RNA gene, partial sequence	HM475134	1442	ENA	870482 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Algibacter pectinivorans DSM 25730	GCA_900112595	scaffold	GenBank	870482 tax ID
[Ref.: #66792]	Algibacter pectinivorans strain DSM 25730	870482.7	wgs	PATRIC	870482 tax ID	*
[Ref.: #66792]	Algibacter pectinivorans DSM 25730	2615840709	draft	JGI IMG/M	870482 tax ID	*

[Ref.: #67770]

GC-content

30 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Algibacter pectinivorans DSM 25730 NCBI: GCA_900112595.1
[Ref.: #69480]	gram-positive	no	99.975	no
[Ref.: #69480]	spore-forming	no	99.998	yes
[Ref.: #69480]	anaerobic	no	99.96	no
[Ref.: #69480]	thermophile	no	99.912	yes
[Ref.: #69480]	motile	no	84.369	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Algibacter pectinivorans DSM 25730 NCBI: GCA_900112595.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #18100]

Culture collection no.

DSM 25730, JCM 17107, KACC 14153

[Ref.: #20218]

Associated Passport(s) in StrainInfo

867464, 867465

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algibacter amylolyticus sp. nov., isolated from intertidal sediment.	Zhang DC, Wu J, Neuner K, Yao J, Margesin R	Int J Syst Evol Microbiol	10.1099/ijs.0.000134	2015	*
Phylogeny	Algibacter aquimarinus sp. nov., isolated from a marine environment, and reclassification of Pontirhabdus pectinivorans as Algibacter pectinivorans comb. nov.	Park SC, Hwang YM, Choe HN, Baik KS, Kim H, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.045815-0	2012	*
Phylogeny	Marinivirga aestuarii gen. nov., sp. nov., a member of the family Flavobacteriaceae, isolated from marine environments, and emended descriptions of the genera Hyunsoonleella, Jejuia and Pontirhabdus and the species Hyunsoonleella jejuensis, Jejuia pallidilutea and Pontirhabdus pectinivorans.	Park SC, Choe HN, Hwang YM, Baik KS, Kim SN, Lee YS, Jung JS, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.042341-0	2012	*
Phylogeny	Pontirhabdus pectinivorans gen. nov., sp. nov., isolated from seawater.	Yi H, Cho JC, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.027441-0	2010	*

References

#18100

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25730

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Algibacter pectinivorans DSM 25730

Algibacter pectinivorans DSM 25730

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