Zunongwangia profunda (DSM 18752, CCTCC AB 206139, SM-A87)

Name: Zunongwangia profunda (DSM 18752, CCTCC AB 206139, SM-A87)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5731

Type strain

Strain Designation SM-A87

Culture col. no. DSM 18752 CCTCC AB 206139 SM-A87 UCCCB18

NCBI tax ID(s) 398743

Special Collections DSMZ Literature strains UCCCB

History <- Y. Zhang, State Key Lab. Microbial Technol., Marine Biotechnol. Res. Center, Shandong Univ., Jinan, China; SM-A87 <- H.-Y. Dang, Key Lab. Marine Geology and Environment, Inst. Oceanology, Chinese Academy of Sci., Qingdao, China Zhang Y, Marine Biotechnology Research Center, Shandong University, SM-A87 < Dang H.-Y., Institute Oceanology, Chinese Academy of Science [Synonyms: Wangia profunda Qin et al. 2007]

Links

Zunongwangia profunda SM-A87 is an obligate aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and has a Non-diffusable yellow pigmentation.

Gram-negative rod-shaped colony-forming pigmented obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400121

DSM 18752

@ref 20215

Last LPSN update 2026-02-09 11:19:02

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Zunongwangia

Species Zunongwangia profunda

Full scientific name Zunongwangia profunda corrig. Qin et al. 2007

Synonyms (1)

Wangia profunda

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
43398	negative	1.5-3.3 µm	0.3-0.6 µm	rod-shaped
125439	negative				99.6
125438	negative				96.5

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43398	1-3 mm	yellow to orange	circular	2 days	Marine agar

Pigmentation

@ref	Production	Name
43398		Non-diffusable yellow

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7685	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
43398	Marine agar (MA)
43398	MacConkey agar

Culture temp

@ref	Growth	Type	Temperature (°C)
7685	positive	growth	28
43398	positive	optimum	25-30
43398	positive	growth	4-38
67772	positive	optimum	25-30
67772	positive	minimum	4
67772	positive	maximum	38

Culture pH

@ref	Ability	Type	PH	PH range
67772	positive	maximum	8.5
67772	positive	minimum	5.0
43398	positive	growth	5-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43398	obligate aerobe
125439	obligate aerobe	94.8

Spore formation

@ref	Spore formation	Confidence
43398
125439		94.4
125438		91.5

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43398	NaCl	positive	growth	0-12 %
43398	NaCl	positive	optimum	3 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43398	62064 ChEBI	2,3-butanediol	+	oxidation
43398	64552 ChEBI	2-hydroxybutyrate	-	oxidation
43398	30916 ChEBI	2-oxoglutarate	-	oxidation
43398	28644 ChEBI	2-oxopentanoate	-	oxidation
43398	16724 ChEBI	4-hydroxybutyrate	-	oxidation
43398	18101 ChEBI	4-hydroxyphenylacetic acid	-	oxidation
43398	30089 ChEBI	acetate	+	oxidation
43398	2509 ChEBI	agar	-	hydrolysis
43398	40585 ChEBI	alpha-cyclodextrin	+	oxidation
43398	17925 ChEBI	alpha-D-glucose	+	oxidation
43398	36219 ChEBI	alpha-lactose	+	oxidation
43398	27613 ChEBI	amygdalin	-	builds acid from
43398	22599 ChEBI	arabinose	+	builds acid from
43398	8295 ChEBI	beta-hydroxybutyrate	-	oxidation
43398	73706 ChEBI	bromosuccinate	-	oxidation
43398		casein	+	hydrolysis
43398	17057 ChEBI	cellobiose	+	oxidation
43398	62968 ChEBI	cellulose	-	hydrolysis
43398	17029 ChEBI	chitin	-	hydrolysis
43398	16383 ChEBI	cis-aconitate	-	oxidation
43398	16947 ChEBI	citrate	+	oxidation
43398	15570 ChEBI	D-alanine	-	oxidation
43398	18333 ChEBI	D-arabitol	-	oxidation
43398	15824 ChEBI	D-fructose	+	oxidation
43398	15895 ChEBI	D-galactonic acid lactone	-	oxidation
43398	12936 ChEBI	D-galactose	+	oxidation
43398	18024 ChEBI	D-galacturonic acid	+	oxidation
43398	8391 ChEBI	D-gluconate	-	oxidation
43398	17784 ChEBI	D-glucosaminic acid	-	oxidation
43398	14314 ChEBI	D-glucose 6-phosphate	+	oxidation
43398	15748 ChEBI	D-glucuronate	-	oxidation
43398	16899 ChEBI	D-mannitol	-	oxidation
43398	16024 ChEBI	D-mannose	+	oxidation
43398	27605 ChEBI	D-psicose	-	oxidation
43398	33801 ChEBI	D-saccharate	-	oxidation
43398	16523 ChEBI	D-serine	-	oxidation
43398	17924 ChEBI	D-sorbitol	+	oxidation
43398	16551 ChEBI	D-trehalose	+	oxidation
43398	23652 ChEBI	dextrin	+	oxidation
43398	17126 ChEBI	DL-carnitine	+	oxidation
43398	17113 ChEBI	erythritol	-	oxidation
43398	16000 ChEBI	ethanolamine	+	oxidation
43398	15740 ChEBI	formate	-	oxidation
43398	16865 ChEBI	gamma-aminobutyric acid	-	oxidation
43398	5291 ChEBI	gelatin	+	hydrolysis
43398	28066 ChEBI	gentiobiose	+	oxidation
43398	17234 ChEBI	glucose	+	builds acid from
43398	29042 ChEBI	glucose 1-phosphate	+	oxidation
43398	32323 ChEBI	glucuronamide	-	oxidation
43398	17754 ChEBI	glycerol	+	oxidation
43398	14336 ChEBI	glycerol 1-phosphate	+	oxidation
43398	73804 ChEBI	glycyl L-aspartic acid	+	oxidation
43398	73784 ChEBI	glycyl-l-glutamate	-	oxidation
43398	24741 ChEBI	hydroxyproline	-	oxidation
43398	17596 ChEBI	inosine	-	oxidation
43398	17240 ChEBI	itaconate	-	oxidation
43398	21217 ChEBI	L-alaninamide	-	oxidation
43398	16977 ChEBI	L-alanine	-	oxidation
43398	73786 ChEBI	L-alanylglycine	-	oxidation
43398	30849 ChEBI	L-arabinose	+	oxidation
43398	17196 ChEBI	L-asparagine	-	oxidation
43398	29991 ChEBI	L-aspartate	-	oxidation
43398	18287 ChEBI	L-fucose	-	oxidation
43398	29985 ChEBI	L-glutamate	-	oxidation
43398	15971 ChEBI	L-histidine	-	oxidation
43398	15603 ChEBI	L-leucine	-	oxidation
43398	15729 ChEBI	L-ornithine	-	oxidation
43398	17295 ChEBI	L-phenylalanine	-	oxidation
43398	17203 ChEBI	L-proline	-	oxidation
43398	18183 ChEBI	L-pyroglutamic acid	-	oxidation
43398	62345 ChEBI	L-rhamnose	-	oxidation
43398	17115 ChEBI	L-serine	-	oxidation
43398	16857 ChEBI	L-threonine	+	oxidation
43398	24996 ChEBI	lactate	-	oxidation
43398	6359 ChEBI	lactulose	+	oxidation
43398	15792 ChEBI	malonate	-	oxidation
43398	17306 ChEBI	maltose	+	oxidation
43398	37684 ChEBI	mannose	-	builds acid from
43398	28053 ChEBI	melibiose	+	oxidation
43398	28053 ChEBI	melibiose	-	builds acid from
43398	37657 ChEBI	methyl D-glucoside	-	oxidation
43398	51850 ChEBI	methyl pyruvate	+	oxidation
43398	75146 ChEBI	monomethyl succinate	-	oxidation
43398	17268 ChEBI	myo-inositol	-	builds acid from
43398	17268 ChEBI	myo-inositol	-	oxidation
43398	28037 ChEBI	N-acetylgalactosamine	-	oxidation
43398	506227 ChEBI	N-acetylglucosamine	-	oxidation
43398	17632 ChEBI	nitrate	+	reduction
43398	50048 ChEBI	phenylethylamine	-	oxidation
43398	17272 ChEBI	propionate	-	oxidation
43398	17148 ChEBI	putrescine	-	oxidation
43398	26490 ChEBI	quinate	-	oxidation
43398	16634 ChEBI	raffinose	+	oxidation
43398	26546 ChEBI	rhamnose	-	builds acid from
43398	15963 ChEBI	ribitol	-	oxidation
43398	41865 ChEBI	sebacic acid	-	oxidation
43398	30911 ChEBI	sorbitol	-	builds acid from
43398	28017 ChEBI	starch	-	hydrolysis
43398	143136 ChEBI	succinamate	-	oxidation
43398	30031 ChEBI	succinate	-	oxidation
43398	17992 ChEBI	sucrose	+	builds acid from
43398	17992 ChEBI	sucrose	+	oxidation
43398	27897 ChEBI	tryptophan	-	energy source
43398	32528 ChEBI	turanose	+	oxidation
43398	53424 ChEBI	tween 20	+	hydrolysis
43398	53423 ChEBI	tween 40	-	oxidation
43398	53423 ChEBI	tween 40	+	hydrolysis
43398	53426 ChEBI	tween 80	-	oxidation
43398	53426 ChEBI	tween 80	+	hydrolysis
43398	16704 ChEBI	uridine	-	oxidation
43398	27248 ChEBI	urocanic acid	-	oxidation
43398	17151 ChEBI	xylitol	-	oxidation

Antibiotic resistance

@ref	ChEBI	Metabolite
43398	28971	ampicillin
43398	23066	cephalosporin
43398	48923	erythromycin
43398	17833	gentamicin
43398	6104	kanamycin
43398	7507	neomycin
43398	17076	streptomycin
43398	27902	tetracycline

Metabolite production

@ref	Chebi-ID	Metabolite
43398	15688 ChEBI	acetoin
43398	16136 ChEBI	hydrogen sulfide
43398	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
43398	15688 ChEBI	acetoin	-
43398	35581 ChEBI	indole		-

Enzymes

@ref	Value	Activity	Ec
43398	2-nitrophenyl beta-D-galactopyranoside	+	3.2.1.52
43398	acid phosphatase	+	3.1.3.2
43398	alkaline phosphatase	+	3.1.3.1
43398	alpha-chymotrypsin	-	3.4.21.1
43398	alpha-fucosidase	-	3.2.1.51
43398	alpha-galactosidase	-	3.2.1.22
43398	alpha-glucosidase	+	3.2.1.20
43398	alpha-mannosidase	-	3.2.1.24
43398	arginine dihydrolase	-	3.5.3.6
43398	beta-galactosidase	+	3.2.1.23
43398	beta-glucosidase	+	3.2.1.21
43398	beta-glucuronidase	-	3.2.1.31
43398	catalase	+	1.11.1.6
43398	cystine arylamidase	-	3.4.11.3
43398	cytochrome oxidase	+	1.9.3.1
43398	esterase (C 4)	-
43398	esterase Lipase (C 8)	-
43398	gelatinase	+
43398	leucine arylamidase	+	3.4.11.1
43398	lipase (C 14)	-
43398	lysine decarboxylase	-	4.1.1.18
43398	N-acetyl-beta-glucosaminidase	+	3.2.1.52
43398	naphthol-AS-BI-phosphohydrolase	+
43398	ornithine decarboxylase	-	4.1.1.17
43398	trypsin	+	3.4.21.4
43398	tryptophan deaminase	-	4.1.99.1
43398	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
7685	deep-sea sediment		East China Sea, southern Okinawa Trough area	China	CHN	Asia
67772	Deep-sea sediment	2005	Southern Okinawa Trough (East China Sea)	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ855467 (>99% sequence identity) for Flavobacteriaceae from Microbeatlas

Aquatic Samples	5051
Soil Samples	259
Animal Samples	1255
Plant Samples	82
Total Samples	6647

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7685	1	Risk group (German classification) According to TRBA 466
67772	1

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67772	ASM2346v1 assembly for Zunongwangia profunda SM-A87 SMA-87	complete	GCA_000023465	655815.4	646564591	655815	99.56

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7685	Zunongwangia profunda strain SMA-87 16S ribosomal RNA gene, partial sequence	DQ855467	1493		655815

GC content

@ref	GC-content (mol%)	Method
7685	35.8
43398	35.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Zunongwangia profunda SM-A87
IMG: 646564591

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.40	no
125439	motility	BacteriaNetⓘ	no	72.00	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Zunongwangia profunda SM-A87
PATRIC: 655815.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.50	no
125438	anaerobic	anaerobicⓘ	no	97.27	no
125438	spore-forming	spore-formingⓘ	no	91.50	yes
125438	aerobic	aerobicⓘ	yes	86.11	yes
125438	thermophilic	thermophileⓘ	no	96.92	no
125438	flagellated	motile2+ⓘ	no	84.25	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs).	Stewart RD, Auffret MD, Snelling TJ, Roehe R, Watson M.	Bioinformatics	10.1093/bioinformatics/bty905	2019
Biotechnology	Engineering Cupriavidus necator DSM 545 for the one-step conversion of starchy waste into polyhydroxyalkanoates.	Brojanigo S, Gronchi N, Cazzorla T, Wong TS, Basaglia M, Favaro L, Casella S	Bioresour Technol	10.1016/j.biortech.2021.126383	2021
	Hyperbranched exopolysaccharide-enhanced foam properties of sodium fatty alcohol polyoxyethylene ether sulfate.	Deng Q, Li H, Sun H, Sun Y, Li Y	Colloids Surf B Biointerfaces	10.1016/j.colsurfb.2016.01.050	2016
Metabolism	Comparative transcriptome analysis reveals that lactose acts as an inducer and provides proper carbon sources for enhancing exopolysaccharide yield in the deep-sea bacterium Zunongwangia profunda SM-A87.	Qin QL, Li Y, Sun ML, Rong JC, Liu SB, Chen XL, Su HN, Zhou BC, Xie BB, Zhang YZ, Zhang XY	PLoS One	10.1371/journal.pone.0115998	2015
Metabolism	A novel exopolysaccharide from deep-sea bacterium Zunongwangia profunda SM-A87: low-cost fermentation, moisture retention, and antioxidant activities.	Sun ML, Liu SB, Qiao LP, Chen XL, Pang X, Shi M, Zhang XY, Qin QL, Zhou BC, Zhang YZ, Xie BB	Appl Microbiol Biotechnol	10.1007/s00253-014-5839-8	2014
	Characterization of bacterial polysaccharide capsules and detection in the presence of deliquescent water by atomic force microscopy.	Su HN, Chen ZH, Liu SB, Qiao LP, Chen XL, He HL, Zhao X, Zhou BC, Zhang YZ	Appl Environ Microbiol	10.1128/AEM.00207-12	2012
Metabolism	Optimization of fermentation conditions and rheological properties of exopolysaccharide produced by deep-sea bacterium Zunongwangia profunda SM-A87.	Liu SB, Qiao LP, He HL, Zhang Q, Chen XL, Zhou WZ, Zhou BC, Zhang YZ	PLoS One	10.1371/journal.pone.0026825	2011
Metabolism	The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation.	Qin QL, Zhang XY, Wang XM, Liu GM, Chen XL, Xie BB, Dang HY, Zhou BC, Yu J, Zhang YZ	BMC Genomics	10.1186/1471-2164-11-247	2010
	Biosorption of copper(II) and cadmium(II) by a novel exopolysaccharide secreted from deep-sea mesophilic bacterium.	Zhou W, Wang J, Shen B, Hou W, Zhang Y	Colloids Surf B Biointerfaces	10.1016/j.colsurfb.2009.04.018	2009
	Structural determination of the lipid A from the deep-sea bacterium Zunongwangia profunda SM-A87: a small-scale approach.	Pither MD, Sun ML, Speciale I, Silipo A, Zhang YZ, Molinaro A, Di Lorenzo F	Glycoconj J	10.1007/s10719-022-10076-6	2022
Phylogeny	Zunongwangia endophytica sp. nov., an endophyte isolated from the salt marsh plant, Halimione portulacoides, and emended description of the genus Zunongwangia.	Fidalgo C, Martins R, Proenca DN, Morais PV, Alves A, Henriques I	Int J Syst Evol Microbiol	10.1099/ijsem.0.002069	2017
Phylogeny	Zunongwangia mangrovi sp. nov., isolated from mangrove (Avicennia marina) rhizosphere, and emended description of the genus Zunongwangia.	Rameshkumar N, Krishnan R, Lang E, Matsumura Y, Sawabe T, Sawabe T	Int J Syst Evol Microbiol	10.1099/ijs.0.053512-0	2013
Phylogeny	Zunongwangia atlantica sp. nov., isolated from deep-sea water.	Shao R, Lai Q, Liu X, Sun F, Du Y, Li G, Shao Z	Int J Syst Evol Microbiol	10.1099/ijs.0.054007-0	2013
Phylogeny	Wangia profunda gen. nov., sp. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from southern Okinawa Trough deep-sea sediment.	Qin QL, Zhao DL, Wang J, Chen XL, Dang HY, Li TG, Zhang YZ, Gao PJ	FEMS Microbiol Lett	10.1111/j.1574-6968.2007.00694.x	2007

References

#7685	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18752
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43398	Qi-Long Qin, Dian-Li Zhao, Jing Wang, Xiu-Lan Chen, Hong-Yue Dang, Tie-Gang Li, Yu-Zhong Zhang, Pei-Ji Gao: Wangia profunda gen. nov., sp. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from southern Okinawa Trough deep-sea sediment. FEMS 271: 53 - 58 2007 ( DOI 10.1111/j.1574-6968.2007.00694 )
#67772	The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Zunongwangia profunda (DSM 18752, CCTCC AB 206139, SM-A87)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000023465

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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