Name: Zeaxanthinibacter enoshimensis TD-ZE3
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5729

Type strain:

Species: Zeaxanthinibacter enoshimensis

Strain Designation: TD-ZE3

Culture col. no.: DSM 18435, CCUG 53613, NBRC 101990, CIP 109560

Strain history: CIP <- 2007 CCUG <- 2006, D. Asker, K. Ueda, Nihon Univ., Fujisawa, Japan: strain TD-ZE3

NCBI tax ID(s): 392009 (species)

SI-ID 302777

CCUG 53613, NBRC 101990, DSM 18435, CIP 109560

Special Collections

Section

When using BacDive for research please cite our paper

Zeaxanthinibacter enoshimensis TD-ZE3 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from shallow seawater.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Zeaxanthinibacter*
	Species	**Zeaxanthinibacter enoshimensis**
	Full Scientific Name (LPSN)	Zeaxanthinibacter enoshimensis Asker et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31939]	Gram stain	negative
[Ref.: #119033]	Gram stain	negative
[Ref.: #125439]	Gram stain	negative Confidence in %90.5
[Ref.: #125438]	Gram stain	negative Confidence in %97.701

[Ref.: #31939]	Cell length	2.55 µm

[Ref.: #31939]	Cell width	0.3 µm

[Ref.: #31939]	Cell shape	rod-shaped
[Ref.: #119033]	Cell shape	rod-shaped

[Ref.: #31939]	Motility	yes
[Ref.: #119033]	Motility	yes
[Ref.: #125438]	Motility	no Confidence in %95

[Ref.: #31939]	Flagellum arrangement	gliding

[Ref.: #59946]

Incubation period

1 day

[Ref.: #31939]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7550]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7550]

Culture medium growth

[Ref.: #7550]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7550]

Culture medium composition

expand / minimize

[Ref.: #42001]

Culture medium

Marine agar (MA)

[Ref.: #42001]

Culture medium growth

[Ref.: #42001]

Culture medium composition

expand / minimize

[Ref.: #119033]

Culture medium

CIP Medium 13

[Ref.: #119033]

Culture medium growth

[Ref.: #119033]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7550]	growth	30 °C
[Ref.: #31939]	growth	16-40 °C
[Ref.: #31939]	optimum	28-30 °C
[Ref.: #42001]	growth	37 °C
[Ref.: #59946]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #31939]			optimum	07-08
[Ref.: #31939]			growth	5.5-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31939]	Oxygen tolerance	aerobe
[Ref.: #59946]	Oxygen tolerance	aerobe
[Ref.: #119033]	Oxygen tolerance	obligate aerobe
[Ref.: #125438]	Oxygen tolerance	aerobe Confidence in %90.029
[Ref.: #125439]	Oxygen tolerance	anaerobe Confidence in %96.5

[Ref.: #31939]	Ability of spore formation	no
[Ref.: #125439]	Ability of spore formation	no Confidence in %90.2

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31939]		NaCl		growth	01-07	%
[Ref.: #31939]		NaCl		optimum	4	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31939]	arabinose ChEBI	+	carbon source
[Ref.: #31939]	cellobiose ChEBI	+	carbon source
[Ref.: #31939]	esculin ChEBI	+	hydrolysis
[Ref.: #31939]	gluconate ChEBI	+	carbon source
[Ref.: #31939]	glucose ChEBI	+	carbon source
[Ref.: #31939]	lactose ChEBI	+	carbon source
[Ref.: #31939]	maltose ChEBI	+	carbon source
[Ref.: #31939]	mannose ChEBI	+	carbon source
[Ref.: #31939]	melibiose ChEBI	+	carbon source
[Ref.: #31939]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #119033]	nitrate ChEBI	-	reduction
[Ref.: #119033]	nitrite ChEBI	-	reduction
[Ref.: #31939]	raffinose ChEBI	+	carbon source
[Ref.: #31939]	sucrose ChEBI	+	carbon source
[Ref.: #31939]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #119033]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #31939]	catalase	+	1.11.1.6
[Ref.: #119033]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #31939]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119033]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #119033]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119033]	11955	-	+	+	+	-	+	+	+	+	+	+	+	-	-	+	+	+	+	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	reductive acetyl coenzyme A pathway	100	7 of 7
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	pentose phosphate pathway	90.91	10 of 11
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	flavin biosynthesis	86.67	13 of 15
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	starch degradation	80	8 of 10
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	vitamin K metabolism	80	4 of 5
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	lipid A biosynthesis	77.78	7 of 9
[Ref.: #66794]	NAD metabolism	77.78	14 of 18
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	glycolysis	76.47	13 of 17
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	tryptophan metabolism	73.68	28 of 38
[Ref.: #66794]	purine metabolism	73.4	69 of 94
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	glutamate and glutamine metabolism	71.43	20 of 28
[Ref.: #66794]	tyrosine metabolism	71.43	10 of 14
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	non-pathway related	71.05	27 of 38
[Ref.: #66794]	arginine metabolism	70.83	17 of 24
[Ref.: #66794]	leucine metabolism	69.23	9 of 13
[Ref.: #66794]	alanine metabolism	68.97	20 of 29
[Ref.: #66794]	pyrimidine metabolism	68.89	31 of 45
[Ref.: #66794]	lipid metabolism	67.74	21 of 31
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	molybdenum cofactor biosynthesis	66.67	6 of 9
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	histidine metabolism	65.52	19 of 29
[Ref.: #66794]	citric acid cycle	64.29	9 of 14
[Ref.: #66794]	lysine metabolism	64.29	27 of 42
[Ref.: #66794]	glutathione metabolism	64.29	9 of 14
[Ref.: #66794]	metabolism of disaccharids	63.64	7 of 11
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	arachidonate biosynthesis	60	3 of 5
[Ref.: #66794]	propionate fermentation	60	6 of 10
[Ref.: #66794]	cellulose degradation	60	3 of 5
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	methionine metabolism	57.69	15 of 26
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	isoprenoid biosynthesis	50	13 of 26
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	resorcinol degradation	50	1 of 2
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	degradation of pentoses	46.43	13 of 28
[Ref.: #66794]	phenylpropanoid biosynthesis	46.15	6 of 13
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	4-hydroxymandelate degradation	44.44	4 of 9
[Ref.: #66794]	cardiolipin biosynthesis	42.86	3 of 7
[Ref.: #66794]	carotenoid biosynthesis	40.91	9 of 22
[Ref.: #66794]	ascorbate metabolism	40.91	9 of 22
[Ref.: #66794]	oxidative phosphorylation	40.66	37 of 91
[Ref.: #66794]	gallate degradation	40	2 of 5
[Ref.: #66794]	myo-inositol biosynthesis	40	4 of 10
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	sulfate reduction	38.46	5 of 13
[Ref.: #66794]	degradation of sugar alcohols	37.5	6 of 16
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	phenol degradation	35	7 of 20
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	3-phenylpropionate degradation	33.33	5 of 15
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	allantoin degradation	33.33	3 of 9
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	degradation of sugar acids	32	8 of 25
[Ref.: #66794]	vitamin B1 metabolism	30.77	4 of 13
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	mevalonate metabolism	28.57	2 of 7
[Ref.: #66794]	degradation of hexoses	27.78	5 of 18
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	polyamine pathway	26.09	6 of 23
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	androgen and estrogen metabolism	25	4 of 16
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	arachidonic acid metabolism	22.22	4 of 18
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7550]	Sample type/isolated from	shallow seawater
[Ref.: #7550]	Geographic location (country and/or sea, region)	Pacific coastline of Japan near Enoshima Island
[Ref.: #7550]	Country	Japan
[Ref.: #7550]	Country ISO 3 Code	JPN
[Ref.: #7550]	Continent	Asia

[Ref.: #59946]	Sample type/isolated from	Seawater
[Ref.: #59946]	Sampling date	2005-04-10
[Ref.: #59946]	Geographic location (country and/or sea, region)	near the Enoshima Island
[Ref.: #59946]	Country	Japan
[Ref.: #59946]	Country ISO 3 Code	JPN
[Ref.: #59946]	Continent	Asia

[Ref.: #119033]	Sample type/isolated from	Environment, Sea water
[Ref.: #119033]	Geographic location (country and/or sea, region)	Enoshima Island
[Ref.: #119033]	Country	Japan
[Ref.: #119033]	Country ISO 3 Code	JPN
[Ref.: #119033]	Continent	Asia
[Ref.: #119033]	Isolation date	2005
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB681649 (>99% sequence identity) for Zeaxanthinibacter enoshimensis subclade from Microbeatlas

Aquatic Samples	1198
Soil Samples	35
Animal Samples	28
Plant Samples	1
Total Samples	1262

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7550]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119033]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7550]	Zeaxanthinibacter enoshimensis gene for 16S rRNA, partial sequence	AB264057	1431	GenBank ENA	392009 tax ID
[Ref.: #20218]	Zeaxanthinibacter enoshimensis gene for 16S rRNA, partial sequence, strain: NBRC 101990	AB681649	1452	GenBank ENA	392009 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Zeaxanthinibacter enoshimensis DSM 18435	GCA_004362865	scaffold	GenBank ENA	392009 tax ID	*
[Ref.: #66792]	Zeaxanthinibacter enoshimensis strain DSM 18435	392009.4	wgs	PATRIC	392009 tax ID	*
[Ref.: #66792]	Zeaxanthinibacter enoshimensis DSM 18435	2731639225	draft	JGI IMG/M	392009 tax ID	*

[Ref.: #7550]

GC-content

46.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Zeaxanthinibacter enoshimensis DSM 18435 NCBI: GCA_004362865.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	97.701	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	97.784	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	90.029	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	89.25	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	97.438	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	95	yes

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Zeaxanthinibacter enoshimensis DSM 18435 NCBI: GCA_004362865
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	90.2
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	76.2
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	90.5
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	anaerobe	96.5

Availability in culture collections External links

[Ref.: #7550]

Culture collection no.

DSM 18435, CCUG 53613, NBRC 101990, CIP 109560

[Ref.: #75209]

SI-ID 302777

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Zeaxanthinibacter aestuarii sp. nov., isolated from estuary sediment and emended description of the genus Zeaxanthinibacter Asker et al. 2007.	Lee Y, Jeong HI, Jeong SE, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.001185	2016	*
Phylogeny	Zeaxanthinibacter enoshimensis gen. nov., sp. nov., a novel zeaxanthin-producing marine bacterium of the family Flavobacteriaceae, isolated from seawater off Enoshima Island, Japan.	Asker D, Beppu T, Ueda K	Int J Syst Evol Microbiol	10.1099/ijs.0.64682-0	2007	*

References

#7550

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18435

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31939

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28195 (see below)

#42001 ; Curators of the CIP;
#59946 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53613

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75209

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID302777.1 )

#119033 Collection of Institut Pasteur ; Curators of the CIP; CIP 109560

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#28195

IJSEM 837 2007 ( DOI 10.1099/ijs.0.64682-0 , PubMed 17392216 )

* These data were automatically processed and therefore are not curated

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BRENDA
PANGAEA
GBIF

Zeaxanthinibacter enoshimensis DSM 18435

Zeaxanthinibacter enoshimensis DSM 18435

Change proposal

Change proposal