Name: Jejuia pallidilutea EM39
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5728

Type strain:

Species: Jejuia pallidilutea

Strain Designation: EM39

Culture col. no.: DSM 21165, KCTC 22298

Strain history: <- CO Jeon, Gyungsang Univ.

NCBI tax ID(s): 504487 (species)

SI-ID 399557

DSM 21165

Special Collections

Other strains from Jejuia pallidilutea

Section

Jejuia pallidilutea EM39 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Jejuia*
	Species	**Jejuia pallidilutea**
	Full Scientific Name (LPSN)	Jejuia pallidilutea Lee et al. 2009

Synonym

Hyunsoonleella pallidilutea

Information on morphological and physiological properties Morphology

[Ref.: #29159]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %96.481

[Ref.: #29159]	Cell length	1.8-2.6 µm

[Ref.: #29159]	Cell width	0.5-0.7 µm

[Ref.: #29159]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #29159]	Motility	no
[Ref.: #67771]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %95.5

[Ref.: #29159]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15574]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #15574]

Culture medium growth

[Ref.: #15574]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15574]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15574]	growth	28 °C
[Ref.: #29159]	growth	15-35 °C
[Ref.: #29159]	optimum	27.5 °C
[Ref.: #67771]	growth	25-30 °C

	pH	Kind of pH		pH
[Ref.: #29159]			optimum	7.75
[Ref.: #29159]			growth	6.5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29159]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #29159]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %91.33
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29159]		NaCl		growth	1-6	%
[Ref.: #29159]		NaCl		optimum	3	%

[Ref.: #67771]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29159]	esculin ChEBI	+	hydrolysis
[Ref.: #29159]	fructose ChEBI	+	carbon source
[Ref.: #29159]	galactose ChEBI	+	carbon source
[Ref.: #29159]	lactose ChEBI	+	carbon source
[Ref.: #29159]	mannitol ChEBI	+	carbon source
[Ref.: #29159]	mannose ChEBI	+	carbon source
[Ref.: #29159]	melibiose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #29159]	acid phosphatase	+	3.1.3.2
[Ref.: #29159]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29159]	catalase	+	1.11.1.6
[Ref.: #29159]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15574]	Sample type/isolated from	seawater
[Ref.: #15574]	Geographic location (country and/or sea, region)	eastern coast of Jeju Island
[Ref.: #15574]	Country	Republic of Korea
[Ref.: #15574]	Country ISO 3 Code	KOR
[Ref.: #15574]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From seawater on the eastern coast in Jeju
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU443204 (>99% sequence identity) for Jejuia pallidilutea subclade from Microbeatlas

Aquatic Samples	905
Soil Samples	49
Animal Samples	69
Plant Samples	5
Total Samples	1028

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15574]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15574]	Jejuia pallidilutea strain EM39 16S ribosomal RNA gene, partial sequence	EU443204	1480	GenBank ENA	504487 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Jejuia pallidilutea DSM 21165	GCA_002973595	contig	GenBank ENA	504487 tax ID	*
[Ref.: #66792]	Jejuia pallidilutea strain DSM 21165	504487.8	wgs	PATRIC	504487 tax ID	*
[Ref.: #66792]	Jejuia pallidilutea DSM 21165	2728369277	draft	JGI IMG/M	504487 tax ID	*

[Ref.: #15574]	GC-content	34.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29159]	GC-content	34.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Jejuia pallidilutea strain DSM 21165 PATRIC: 504487.8
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Jejuia pallidilutea strain DSM 21165 PATRIC: 504487.8
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.481	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.742	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.33	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	83.964	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.928	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	95.5	yes

Availability in culture collections External links

[Ref.: #15574]

Culture collection no.

DSM 21165, KCTC 22298

[Ref.: #75208]

SI-ID 399557

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Jejuia pallidilutea gen. nov., sp. nov., a new member of the family Flavobacteriaceae isolated from seawater.	Lee DH, Kahng HY, Lee YS, Jung JS, Kim JM, Chung BS, Park SK, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.007625-0	2009	*

References

#15574

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21165

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29159

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25583 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75208

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399557.1 )

#25583

IJSEM 2148 2009 ( DOI 10.1099/ijs.0.007625-0 , PubMed 19605703 )

* These data were automatically processed and therefore are not curated

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Jejuia pallidilutea strain DSM 21165

Jejuia pallidilutea strain DSM 21165

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