Name: Kordia periserrulae DSM 25731
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5720

Type strain:

Species: Kordia periserrulae

Culture col. no.: DSM 25731, KACC 14311, IMCC 1412

Strain history: <- S.-W. Kwon, KACC; IMCC1412 <- J.-C. Cho, Inha University, Incheon, Korea

NCBI tax ID(s): 701523 (species)

SI-ID 396636

DSM 25731

Section

Kordia periserrulae DSM 25731 is a mesophilic, Gram-negative bacterium that was isolated from digestive tract of a marine polychaete.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Kordia*
	Species	**Kordia periserrulae**
	Full Scientific Name (LPSN)	Kordia periserrulae Choi et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.99

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18101]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #18101]

Culture medium growth

[Ref.: #18101]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18101]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18101]			growth	37 °C

[Ref.: #18101]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18101]	Sample type/isolated from	digestive tract of a marine polychaete
[Ref.: #18101]	Geographic location (country and/or sea, region)	Donggum Island
[Ref.: #18101]	Country	Republic of Korea
[Ref.: #18101]	Country ISO 3 Code	KOR
[Ref.: #18101]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Annelida
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GU233518 (>99% sequence identity) for Kordia periserrulae subclade from Microbeatlas

Aquatic Samples	34
Soil Samples
Animal Samples	10
Plant Samples
Total Samples	44

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18101]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #18101]	Kordia periserrulae strain IMCC1412 16S ribosomal RNA gene, partial sequence	GU233518	1474	ENA	701523 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Kordia periserrulae DSM 25731	GCA_003054265	contig	GenBank	701523 tax ID	*
[Ref.: #66792]	Kordia periserrulae strain DSM 25731	701523.3	wgs	PATRIC	701523 tax ID	*
[Ref.: #66792]	Kordia periserrulae DSM 25731	2734482288	draft	JGI IMG/M	701523 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Kordia periserrulae strain DSM 25731 PATRIC: 701523.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kordia periserrulae strain DSM 25731 PATRIC: 701523.3
[Ref.: #69480]	gram-positive	no	98.15	no
[Ref.: #69480]	anaerobic	no	99.517	no
[Ref.: #69480]	halophile	no	75.735	no
[Ref.: #69480]	spore-forming	no	95.031	no
[Ref.: #69480]	glucose-util	yes	84.603	no
[Ref.: #69480]	thermophile	no	98.666	yes
[Ref.: #69480]	flagellated	no	94.97	no
[Ref.: #69480]	motile	no	89.471	no
[Ref.: #69480]	aerobic	yes	91.338	no
[Ref.: #69480]	glucose-ferment	no	89.301	no

Availability in culture collections External links

[Ref.: #18101]

Culture collection no.

DSM 25731, KACC 14311, IMCC 1412

[Ref.: #75200]

SI-ID 396636

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kordia jejudonensis sp. nov., isolated from the junction between the ocean and a freshwater spring, and emended description of the genus Kordia.	Park S, Jung YT, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.058776-0	2013	*
Phylogeny	Kordia aquimaris sp. nov., a zeaxanthin-producing member of the family Flavobacteriaceae isolated from surface seawater, and emended description of the genus Kordia.	Hameed A, Shahina M, Lin SY, Cho JC, Lai WA, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.056051-0	2013	*
Phylogeny	Kordia antarctica sp. nov., isolated from Antarctic seawater.	Baek K, Choi A, Kang I, Lee K, Cho JC	Int J Syst Evol Microbiol	10.1099/ijs.0.052738-0	2013	*
Phylogeny	Kordia periserrulae sp. nov., isolated from a marine polychaete Periserrula leucophryna, and emended description of the genus Kordia.	Choi A, Oh HM, Yang SJ, Cho JC	Int J Syst Evol Microbiol	10.1099/ijs.0.022764-0	2010	*

References

#18101

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25731

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75200

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396636.1 )

* These data were automatically processed and therefore are not curated

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Kordia periserrulae strain DSM 25731

Kordia periserrulae strain DSM 25731

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