Christiangramia gaetbulicola RA5-111 | Type strain | DSM 23082, JCM 16528, KCTC 23022, NBRC 106272 | BacDiveID:5719

Strain identifier

BacDive ID: 5719

Type strain:

Species: Christiangramia gaetbulicola

Strain Designation: RA5-111

Culture col. no.: DSM 23082, JCM 16528, KCTC 23022, NBRC 106272

Strain history: <- SB Kim, Chungnam Univ.

NCBI tax ID(s): 703340 (species)

Section

Christiangramia gaetbulicola RA5-111 is an aerobe, mesophilic, motile bacterium that was isolated from foreshore soil.

motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Christiangramia*
	Species	**Christiangramia gaetbulicola**
	Full Scientific Name (LPSN)	Christiangramia gaetbulicola (Cho et al. 2011) Deshmukh and Oren 2023

Synonym

Gramella gaetbulicola

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.97

[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #67771]	Motility	yes

[Ref.: #67771]	Flagellum arrangement	gliding

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16698]			growth	28 °C
[Ref.: #67770]			growth	30 °C
[Ref.: #67771]			growth	30 °C

[Ref.: #16698]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

[Ref.: #67770]	Observation	quinones: MK-6
[Ref.: #67771]	Observation	quinones: MK-6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16698]	Sample type/isolated from	foreshore soil
[Ref.: #16698]	Geographic location (country and/or sea, region)	Chungnam, Boryeong, Daechon-Dong
[Ref.: #16698]	Country	Republic of Korea
[Ref.: #16698]	Country ISO 3 Code	KOR
[Ref.: #16698]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Foreshore soil in the Buan area
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jeonbuk
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From foreshore soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Buan area, Jeonbuk
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Coast

What are isolation sources categories?

Global distribution of 16S sequence GQ857650 (>99% sequence identity) for Gramella gaetbulicola from Microbeatlas

Aquatic Samples	28
Soil Samples	2
Animal Samples	4
Plant Samples
Total Samples	34

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16698]	Gramella gaetbulicola strain RA5-111 16S ribosomal RNA gene, partial sequence	GQ857650	1402	ENA	703340 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Christiangramia gaetbulicola DSM 23082	GCA_003054225	contig	GenBank	703340 tax ID
[Ref.: #66792]	Gramella gaetbulicola strain DSM 23082	703340.3	wgs	PATRIC	703340 tax ID	*
[Ref.: #66792]	Gramella gaetbulicola DSM 23082	2734482285	draft	JGI IMG/M	703340 tax ID	*

[Ref.: #16698]	GC-content	39.1 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	39.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Gramella gaetbulicola strain DSM 23082 PATRIC: 703340.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gramella gaetbulicola strain DSM 23082 PATRIC: 703340.3
[Ref.: #69480]	gram-positive	no	97.805	yes
[Ref.: #69480]	anaerobic	no	99.072	no
[Ref.: #69480]	halophile	yes	52.856	no
[Ref.: #69480]	spore-forming	no	96.104	no
[Ref.: #69480]	glucose-util	yes	88.741	no
[Ref.: #69480]	flagellated	no	94.691	yes
[Ref.: #69480]	thermophile	no	98.888	yes
[Ref.: #69480]	aerobic	yes	88.826	yes
[Ref.: #69480]	glucose-ferment	no	89.314	no
[Ref.: #69480]	motile	no	89.012	no

Availability in culture collections External links

Culture collection no.

DSM 23082, JCM 16528, KCTC 23022, NBRC 106272

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gramella bathymodioli sp. nov., isolated from a mussel inhabiting a hydrothermal field in the Okinawa Trough.	Liu L, Wang S, Zhou S, Sun W, Fu T, Zhang Y, Zhang XH, Yu M	Int J Syst Evol Microbiol	10.1099/ijsem.0.004488	2020	*
Phylogeny	Description of Gramella forsetii sp. nov., a marine Flavobacteriaceae isolated from North Sea water, and emended description of Gramella gaetbulicola Cho et al. 2011.	Panschin I, Becher M, Verbarg S, Sproer C, Rohde M, Schuler M, Amann RI, Harder J, Tindall BJ, Hahnke RL	Int J Syst Evol Microbiol	10.1099/ijsem.0.001700	2017	*
Phylogeny	Gramella lutea sp. nov., a Novel Species of the Family Flavobacteriaceae Isolated from Marine Sediment.	Yoon J, Jo Y, Kim GJ, Choi H	Curr Microbiol	10.1007/s00284-015-0849-z	2015	*
Phylogeny	Gramella gaetbulicola sp. nov., a member of the family Flavobacteriaceae isolated from foreshore soil.	Cho SH, Chae SH, Cho M, Kim TU, Choi S, Han JH, Kim YT, Joung Y, Joh K, Nedashkovskaya OI, Kim SB	Int J Syst Evol Microbiol	10.1099/ijs.0.027599-0	2010	*

References

#16698

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23082

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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