Christiangramia portivictoriae UST040801-001 | Type strain | DSM 23547, JCM 13192, NBRC 101534, NRRL B-41137, CIP 109020, KCTC 22434 | BacDiveID:5718

Strain identifier

BacDive ID: 5718

Type strain:

Species: Christiangramia portivictoriae

Strain Designation: UST040801-001

Culture col. no.: DSM 23547, JCM 13192, NBRC 101534, NRRL B-41137, CIP 109020, KCTC 22434

Strain history: S. Lau UST040801-001.

NCBI tax ID(s): 1121932 (strain), 326069 (species)

Section

Christiangramia portivictoriae UST040801-001 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sediment.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Christiangramia*
	Species	**Christiangramia portivictoriae**
	Full Scientific Name (LPSN)	Christiangramia portivictoriae (Lau et al. 2005) Deshmukh and Oren 2023

Synonym

Gramella portivictoriae

Information on morphological and physiological properties Morphology

[Ref.: #31567]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.898

[Ref.: #31567]	Cell length	2.1 µm

[Ref.: #31567]	Cell shape	rod-shaped

[Ref.: #31567]	Motility	yes

[Ref.: #31567]	Flagellum arrangement	gliding

Pigment production

yes

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17278]			growth	28 °C
[Ref.: #31567]			growth	04-36 °C
[Ref.: #31567]			optimum	29 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #17278]	Temperature range	mesophilic
[Ref.: #31567]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31567]			optimum	7.5
[Ref.: #31567]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

Oxygen tolerance

aerobe

[Ref.: #31567]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.991

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31567]		NaCl		growth	01-06	%
[Ref.: #31567]		NaCl		optimum	3.5	%

Observation

quinones: MK-6

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31567]		arabinose ChEBI	+	carbon source
[Ref.: #31567]		galactose ChEBI	+	carbon source
[Ref.: #31567]		glucose ChEBI	+	carbon source
[Ref.: #31567]		glycerol ChEBI	+	carbon source
[Ref.: #31567]		mannitol ChEBI	+	carbon source
[Ref.: #31567]		melibiose ChEBI	+	carbon source
[Ref.: #31567]		sorbitol ChEBI	+	carbon source
[Ref.: #31567]		sucrose ChEBI	+	carbon source
[Ref.: #31567]		tween 20 ChEBI	+	carbon source
[Ref.: #31567]		tween 40 ChEBI	+	carbon source
[Ref.: #31567]		tween 80 ChEBI	+	carbon source
		Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31567]		acid phosphatase	+	3.1.3.2
[Ref.: #31567]		alkaline phosphatase	+	3.1.3.1
[Ref.: #31567]		alpha-galactosidase	+	3.2.1.22
[Ref.: #31567]		catalase	+	1.11.1.6
[Ref.: #31567]		cytochrome oxidase	+	1.9.3.1
[Ref.: #31567]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17278]	Sample type/isolated from	sediment
[Ref.: #17278]	Geographic location (country and/or sea, region)	Victoria Harbour
[Ref.: #17278]	Country	Hong Kong
[Ref.: #17278]	Country ISO 3 Code	HKG
[Ref.: #17278]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sediment in Victoria Harbour
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hong Kong
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

Global distribution of 16S sequence AB681471 (>99% sequence identity) for Gramella portivictoriae from Microbeatlas

Aquatic Samples	353
Soil Samples	24
Animal Samples	28
Plant Samples	1
Total Samples	406

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17278]	Gramella portivictoriae strain UST040801-001 16S ribosomal RNA gene, partial sequence	DQ002871	1468	ENA	326069 tax ID
[Ref.: #20218]	Gramella portivictoriae gene for 16S rRNA, partial sequence, strain: NBRC 101534	AB681471	1455	ENA	326069 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Christiangramia portivictoriae DSM 23547	GCA_000423045	scaffold	GenBank	1121932 tax ID
[Ref.: #66792]	Gramella portivictoriae DSM 23547	1121932.6	wgs	PATRIC	1121932 tax ID	*
[Ref.: #66792]	Gramella portivictoriae DSM 23547	2524614725	draft	JGI IMG/M	1121932 tax ID	*

[Ref.: #17278]	GC-content	39.9±0.2 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31567]	GC-content	39.9 mol%
[Ref.: #67770]	GC-content	39.7-40.1 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Gramella portivictoriae DSM 23547 DSM 23547 NCBI: GCA_000423045.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gramella portivictoriae DSM 23547 PATRIC: 1121932.6
[Ref.: #69480]	motile	no	85.641	no
[Ref.: #69480]	flagellated	no	94.243	yes
[Ref.: #69480]	gram-positive	no	97.759	yes
[Ref.: #69480]	anaerobic	no	99.501	yes
[Ref.: #69480]	halophile	yes	64.521	no
[Ref.: #69480]	spore-forming	no	96.539	yes
[Ref.: #69480]	thermophile	no	99.23	yes
[Ref.: #69480]	glucose-util	yes	86.512	no
[Ref.: #69480]	aerobic	yes	91.881	yes
[Ref.: #69480]	glucose-ferment	no	91.018	no

Availability in culture collections External links

Culture collection no.

DSM 23547, JCM 13192, NBRC 101534, NRRL B-41137, CIP 109020, KCTC 22434

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Gramella forsetii sp. nov., a marine Flavobacteriaceae isolated from North Sea water, and emended description of Gramella gaetbulicola Cho et al. 2011.	Panschin I, Becher M, Verbarg S, Sproer C, Rohde M, Schuler M, Amann RI, Harder J, Tindall BJ, Hahnke RL	Int J Syst Evol Microbiol	10.1099/ijsem.0.001700	2017	*
Phylogeny	Gramella portivictoriae sp. nov., a novel member of the family Flavobacteriaceae isolated from marine sediment.	Lau SCK, Tsoi MMY, Li X, Plakhotnikova I, Dobretsov S, Wong PK, Qian PY	Int J Syst Evol Microbiol	10.1099/ijs.0.63824-0	2005	*
	Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050(T) (DSM 19838(T)) and Gramella portivictoriae UST040801-001(T) (DSM 23547(T)), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005.	Panschin I, Huang S, Meier-Kolthoff JP, Tindall BJ, Rohde M, Verbarg S, Lapidus A, Han J, Trong S, Haynes M, Reddy TB, Huntemann M, Pati A, Ivanova NN, Mavromatis K, Markowitz V, Woyke T, Goker M, Klenk HP, Kyrpides NC, Hahnke RL	Stand Genomic Sci	10.1186/s40793-016-0163-9	2016	*

References

#17278

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23547

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31567

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27857 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#27857

IJSEM 2497 2005 ( DOI 10.1099/ijs.0.63824-0 , PubMed 16280516 )

* These data were automatically processed and therefore are not curated

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