Name: Bizionia argentinensis CCM-A-29 1259
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5714

Type strain:

Species: Bizionia argentinensis

Strain Designation: CCM-A-29 1259, JUB59

Culture col. no.: DSM 19628

Strain history: <- W. P. Mac Cormack, Inst. Antártico Argentino, Buenos Aires, Argentina; JUB59

NCBI tax ID(s): 456455 (species)

SI-ID 399870

DSM 19628

Section

Bizionia argentinensis CCM-A-29 1259 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from surface marine water.

Gram-negative
rod-shaped
aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Bizionia*
	Species	**Bizionia argentinensis**
	Full Scientific Name (LPSN)	Bizionia argentinensis Bercovich et al. 2008

Synonym

"Algorimicrobium argentinense"

Information on morphological and physiological properties Morphology

[Ref.: #32510]	Gram stain	negative

[Ref.: #32510]	Cell length	02-03 µm

[Ref.: #32510]	Cell width	0.2-0.4 µm

[Ref.: #32510]	Cell shape	rod-shaped

[Ref.: #32510]	Motility	no

[Ref.: #32510]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8220]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #8220]

Culture medium growth

[Ref.: #8220]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8220]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8220]	growth	20 °C
[Ref.: #32510]	growth	02-28 °C
[Ref.: #32510]	optimum	22-25 °C

[Ref.: #8220]

Temperature range

psychrophilic

	pH	Kind of pH		pH
[Ref.: #32510]			optimum	7
[Ref.: #32510]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32510]

Oxygen tolerance

aerobe

[Ref.: #32510]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32510]		NaCl		growth	01-06	%
[Ref.: #32510]		NaCl		optimum	01-06	%

[Ref.: #32510]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32510]	alanine ChEBI	+	carbon source
[Ref.: #32510]	histidine ChEBI	+	carbon source
[Ref.: #32510]	propionate ChEBI	+	carbon source
[Ref.: #32510]	rhamnose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32510]		catalase	+	1.11.1.6
[Ref.: #32510]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8220]	Sample type/isolated from	surface marine water
[Ref.: #8220]	Geographic location (country and/or sea, region)	South Shetland Islands, King George Island (Isla 25 de Mayo), Potter Cove near the Argentinean Jubany Scientific Station (62° 14' S 58° 40' W)
[Ref.: #8220]	Continent	Australia and Oceania
[Ref.: #8220]	Geographic location	-62.2333°/-58.6667°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU021217 (>99% sequence identity) for Bizionia argentinensis subclade from Microbeatlas

Aquatic Samples	511
Soil Samples	21
Animal Samples	37
Plant Samples	1
Total Samples	570

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8220]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8220]	Bizionia argentinensis strain JUB59 16S ribosomal RNA gene, complete sequence	EU021217	1519	ENA	1046627 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bizionia argentinensis JUB59	GCA_000224335	contig	GenBank	1046627 tax ID	*
[Ref.: #66792]	Bizionia argentinensis JUB59	1046627.3	wgs	PATRIC	1046627 tax ID	*
[Ref.: #66792]	Bizionia argentinensis JUB59, DSM 19628	2513237264	draft	JGI IMG/M	1046627 tax ID	*

[Ref.: #8220]	GC-content	34.0 mol%
[Ref.: #32510]	GC-content	34 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bizionia argentinensis JUB59 PATRIC: 1046627.3
[Ref.: #69480]	motile	no	87.583	no
[Ref.: #69480]	flagellated	no	94.799	yes
[Ref.: #69480]	gram-positive	no	98.262	yes
[Ref.: #69480]	anaerobic	no	99.349	no
[Ref.: #69480]	aerobic	yes	88.109	no
[Ref.: #69480]	halophile	no	50	no
[Ref.: #69480]	spore-forming	no	95	yes
[Ref.: #69480]	thermophile	no	99.785	yes
[Ref.: #69480]	glucose-util	yes	80.773	no
[Ref.: #69480]	glucose-ferment	no	90.088	no

Availability in culture collections External links

[Ref.: #8220]

Culture collection no.

DSM 19628

[Ref.: #75196]

SI-ID 399870

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Structure of the putative long tail fiber receptor-binding tip of a novel temperate bacteriophage from the Antarctic bacterium Bizionia argentinensis JUB59.	Pellizza L, Lopez JL, Vazquez S, Sycz G, Guimaraes BG, Rinaldi J, Goldbaum FA, Aran M, Mac Cormack WP, Klinke S	J Struct Biol	10.1016/j.jsb.2020.107595	2020	*
Phylogeny	Bizionia psychrotolerans sp. nov., a psychrophilic bacterium isolated from the intestine of a sea cucumber (Apostichopus japonicus).	Song EJ, Lee MH, Seo MJ, Yim KJ, Hyun DW, Bae JW, Park SL, Roh SW, Nam YD	Antonie Van Leeuwenhoek	10.1007/s10482-014-0253-x	2014	*
Genetics	Draft genome sequence of Bizionia argentinensis, isolated from Antarctic surface water.	Lanzarotti E, Pellizza L, Bercovich A, Foti M, Coria SH, Vazquez SC, Ruberto L, Hernandez EA, Dias RL, Mac Cormack WP, Cicero DO, Smal C, Nicolas MF, Vasconcelos AT, Marti MA, Turjanski AG	J Bacteriol	10.1128/JB.06245-11	2011	*
Phylogeny	Bizionia argentinensis sp. nov., isolated from surface marine water in Antarctica.	Bercovich A, Vazquez SC, Yankilevich P, Coria SH, Foti M, Hernandez E, Vidal A, Ruberto L, Melo C, Marenssi S, Criscuolo M, Memoli M, Arguelles M, Mac Cormack WP	Int J Syst Evol Microbiol	10.1099/ijs.0.65599-0	2008	*
Metabolism	MliR, a novel MerR-like regulator of iron homeostasis, impacts metabolism, membrane remodeling, and cell adhesion in the marine Bacteroidetes Bizionia argentinensis.	Pellizza L, Bialer MG, Sieira R, Aran M	Front Microbiol	10.3389/fmicb.2022.987756	2022	*

References

#8220

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19628

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32510

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28730 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75196

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399870.1 )

#28730

IJSEM 2363 2008 ( DOI 10.1099/ijs.0.65599-0 , PubMed 18842857 )

* These data were automatically processed and therefore are not curated

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Bizionia argentinensis JUB59

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