Bizionia argentinensis (DSM 19628, CCM-A-29 1259, JUB59)

Name: Bizionia argentinensis (DSM 19628, CCM-A-29 1259, JUB59)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5714

Type strain

Strain Designation CCM-A-29 1259, JUB59

Culture col. no. DSM 19628 CCM-A-29 1259 JUB59

NCBI tax ID(s) 456455

Special Collections DSMZ Literature strains

History <- W. P. Mac Cormack, Inst. Antártico Argentino, Buenos Aires, Argentina; JUB59

Links

Bizionia argentinensis CCM-A-29 1259 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from surface marine water.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 399870

DSM 19628

@ref 20215

Last LPSN update 2026-02-09 11:19:02

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Bizionia

Species Bizionia argentinensis

Full scientific name Bizionia argentinensis Bercovich et al. 2008

Synonyms (1)

"Algorimicrobium argentinense"

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
32510	negative	02-03 µm	0.2-0.4 µm	rod-shaped
125438					94
125438	negative				98.3
125439	negative				99.7

Pigmentation

32510

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8220	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
8220	positive	growth	20
32510	positive	growth	02-28
32510	positive	optimum	22-25

Culture pH

@ref	Ability	Type	PH
32510	positive	optimum	7
32510	positive	growth	7

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32510	aerobe
125439	obligate aerobe	94.5

Spore formation

@ref	Spore formation	Confidence
32510
125439		98.7

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32510	NaCl	positive	growth	01-06 %
32510	NaCl	positive	optimum	01-06 %

Observation

32510

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32510	16449 ChEBI	alanine	+	carbon source
32510	27570 ChEBI	histidine	+	carbon source
32510	17272 ChEBI	propionate	+	carbon source
32510	26546 ChEBI	rhamnose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32510	catalase	+	1.11.1.6
32510	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

Isolation

@ref	Sample type	Geographic location	Continent	Latitude	Longitude
8220	surface marine water	South Shetland Islands, King George Island (Isla 25 de Mayo), Potter Cove near the Argentinean Jubany Scientific Station (62° 14' S 58° 40' W)	Australia and Oceania	-62.2333	-58.6667 -62.2333/-58.6667

Taxonmaps

69479

Global distribution of 16S sequence EU021217 (>99% sequence identity) for Bizionia argentinensis subclade from Microbeatlas

Aquatic Samples	511
Soil Samples	21
Animal Samples	37
Plant Samples	1
Total Samples	570

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8220	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	BizArg_1.0 assembly for Bizionia argentinensis JUB59	contig	GCA_000224335	1046627.3	2513237264	1046627	65.19

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8220	Bizionia argentinensis strain JUB59 16S ribosomal RNA gene, complete sequence	EU021217	1519		1046627

GC content

@ref	GC-content (mol%)
8220	34.0
32510	34

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bizionia argentinensis JUB59
NCBI: GCA_000224335

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.70	no
125439	motility	BacteriaNetⓘ	no	67.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bizionia argentinensis JUB59
PATRIC: 1046627.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.30	yes
125438	anaerobic	anaerobicⓘ	no	96.82	yes
125438	spore-forming	spore-formingⓘ	no	89.83	no
125438	aerobic	aerobicⓘ	yes	87.96	yes
125438	thermophilic	thermophileⓘ	no	96.47	yes
125438	flagellated	motile2+ⓘ	no	94.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes.	Garcia-Lopez M, Meier-Kolthoff JP, Tindall BJ, Gronow S, Woyke T, Kyrpides NC, Hahnke RL, Goker M.	Front Microbiol	10.3389/fmicb.2019.02083	2019
Genetics	Structure of the putative long tail fiber receptor-binding tip of a novel temperate bacteriophage from the Antarctic bacterium Bizionia argentinensis JUB59.	Pellizza L, Lopez JL, Vazquez S, Sycz G, Guimaraes BG, Rinaldi J, Goldbaum FA, Aran M, Mac Cormack WP, Klinke S	J Struct Biol	10.1016/j.jsb.2020.107595	2020
Genetics	Draft genome sequence of Bizionia argentinensis, isolated from Antarctic surface water.	Lanzarotti E, Pellizza L, Bercovich A, Foti M, Coria SH, Vazquez SC, Ruberto L, Hernandez EA, Dias RL, Mac Cormack WP, Cicero DO, Smal C, Nicolas MF, Vasconcelos AT, Marti MA, Turjanski AG	J Bacteriol	10.1128/JB.06245-11	2011
Metabolism	MliR, a novel MerR-like regulator of iron homeostasis, impacts metabolism, membrane remodeling, and cell adhesion in the marine Bacteroidetes Bizionia argentinensis.	Pellizza L, Bialer MG, Sieira R, Aran M	Front Microbiol	10.3389/fmicb.2022.987756	2022
Phylogeny	Bizionia psychrotolerans sp. nov., a psychrophilic bacterium isolated from the intestine of a sea cucumber (Apostichopus japonicus).	Song EJ, Lee MH, Seo MJ, Yim KJ, Hyun DW, Bae JW, Park SL, Roh SW, Nam YD	Antonie Van Leeuwenhoek	10.1007/s10482-014-0253-x	2014
Phylogeny	Bizionia argentinensis sp. nov., isolated from surface marine water in Antarctica.	Bercovich A, Vazquez SC, Yankilevich P, Coria SH, Foti M, Hernandez E, Vidal A, Ruberto L, Melo C, Marenssi S, Criscuolo M, Memoli M, Arguelles M, Mac Cormack WP	Int J Syst Evol Microbiol	10.1099/ijs.0.65599-0	2008

References

#8220	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19628
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28730	IJSEM 2363 2008 ( DOI 10.1099/ijs.0.65599-0 , PubMed 18842857 )
#32510	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28730
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bizionia argentinensis (DSM 19628, CCM-A-29 1259, JUB59)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000224335

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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