Name: Chryseobacterium treverense DSM 22251
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5708

Type strain:

Species: Chryseobacterium treverense

Culture col. no.: DSM 22251, CCUG 57657, CIP 110413, IMMIB L-1519

Strain history: CIP <- 2012, DSMZ <- A.F. Yassin, Bonn Univ., Bonn, Germany: strain IMMIB L-1519

NCBI tax ID(s): 631455 (species)

SI-ID 370650

DSM 22251, CCUG 57657, CIP 110413

Section

Chryseobacterium treverense DSM 22251 is an aerobe, mesophilic, Gram-negative human pathogen that was isolated from human Blood.

Gram-negative
rod-shaped
aerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium treverense**
	Full Scientific Name (LPSN)	Chryseobacterium treverense Yassin et al. 2010

Synonym

Kaistella treverensis

Information on morphological and physiological properties Morphology

[Ref.: #29627]	Gram stain	negative
[Ref.: #123580]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.965

[Ref.: #29627]	Cell length	1.4-2.7 µm

[Ref.: #29627]	Cell width	0.5-0.6 µm

[Ref.: #29627]	Cell shape	rod-shaped
[Ref.: #123580]	Cell shape	rod-shaped

[Ref.: #29627]	Motility	no
[Ref.: #123580]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %92.254

[Ref.: #29627]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16233]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #16233]

Culture medium growth

[Ref.: #16233]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16233]

Culture medium composition

expand / minimize

[Ref.: #16233]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #16233]

Culture medium growth

[Ref.: #16233]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16233]

Culture medium composition

expand / minimize

[Ref.: #37593]

Culture medium

MEDIUM 45 - for Columbia agar with sheep blood

[Ref.: #37593]

Culture medium growth

[Ref.: #37593]

Culture medium composition

expand / minimize

[Ref.: #123580]

Culture medium

CIP Medium 45

[Ref.: #123580]

Culture medium growth

[Ref.: #123580]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #16233]	growth	28 °C
[Ref.: #29627]	growth	05-30 °C
[Ref.: #29627]	optimum	20 °C
[Ref.: #37593]	growth	37 °C
[Ref.: #61408]	growth	30 °C

[Ref.: #16233]	Temperature range	mesophilic
[Ref.: #29627]	Temperature range	psychrophilic
[Ref.: #37593]	Temperature range	mesophilic
[Ref.: #61408]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29627]	Oxygen tolerance	aerobe
[Ref.: #61408]	Oxygen tolerance	aerobe

[Ref.: #29627]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.989

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29627]		NaCl		growth	0-6	%
[Ref.: #29627]		NaCl		optimum	6	%

[Ref.: #29627]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29627]	adipate ChEBI	+	carbon source
[Ref.: #29627]	citrate ChEBI	+	carbon source
[Ref.: #29627]	gluconate ChEBI	+	carbon source
[Ref.: #29627]	mannose ChEBI	+	carbon source
[Ref.: #29627]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #29627]	phenylacetate ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #29627]	acid phosphatase	+	3.1.3.2
[Ref.: #29627]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29627]	catalase	+	1.11.1.6
[Ref.: #29627]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16233]	Sample type/isolated from	human Blood
[Ref.: #16233]	Geographic location (country and/or sea, region)	Trier
[Ref.: #16233]	Country	Germany
[Ref.: #16233]	Country ISO 3 Code	DEU
[Ref.: #16233]	Continent	Europe

[Ref.: #61408]	Sample type/isolated from	Human blood
[Ref.: #61408]	Sampling date	1996-02-01
[Ref.: #61408]	Geographic location (country and/or sea, region)	Trier City
[Ref.: #61408]	Country	Germany
[Ref.: #61408]	Country ISO 3 Code	DEU
[Ref.: #61408]	Continent	Europe

[Ref.: #123580]	Sample type/isolated from	Human, Blood
[Ref.: #123580]	Geographic location (country and/or sea, region)	Trier
[Ref.: #123580]	Country	Germany
[Ref.: #123580]	Country ISO 3 Code	DEU
[Ref.: #123580]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FN297836 (>99% sequence identity) for Kaistella from Microbeatlas

Aquatic Samples	491
Soil Samples	196
Animal Samples	807
Plant Samples	99
Total Samples	1593

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16233]	Pathogenicity (human)	yes, in single cases
[Ref.: #16233]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123580]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16233]	Chryseobacterium treverens partial 16S rRNA gene, type strain IMMIB L-1519T	FN297836	1523	ENA	631455 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Kaistella treverensis DSM 22251	GCA_900114045	contig	GenBank	631455 tax ID	*
[Ref.: #66792]	Chryseobacterium treverense strain DSM 22251	631455.4	wgs	PATRIC	631455 tax ID	*
[Ref.: #66792]	Chryseobacterium treverense DSM 22251	2687453775	draft	JGI IMG/M	631455 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chryseobacterium treverense strain DSM 22251 PATRIC: 631455.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chryseobacterium treverense strain DSM 22251 PATRIC: 631455.4
[Ref.: #69480]	gram-positive	no	98.296	yes
[Ref.: #69480]	anaerobic	no	98.856	no
[Ref.: #69480]	halophile	no	82.377	yes
[Ref.: #69480]	spore-forming	no	96.052	yes
[Ref.: #69480]	glucose-util	yes	87.51	no
[Ref.: #69480]	thermophile	no	99.157	yes
[Ref.: #69480]	flagellated	no	97.063	no
[Ref.: #69480]	aerobic	yes	86	yes
[Ref.: #69480]	motile	no	91.6	no
[Ref.: #69480]	glucose-ferment	no	93.351	no

Availability in culture collections External links

[Ref.: #16233]

Culture collection no.

DSM 22251, CCUG 57657, CIP 110413, IMMIB L-1519

[Ref.: #75190]

SI-ID 370650

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium treverense sp. nov., isolated from a human clinical source.	Yassin AF, Hupfer H, Siering C, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.017327-0	2009	*

References

#16233

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22251

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29627

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26017 (see below)

#37593 ; Curators of the CIP;
#61408 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57657

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75190

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID370650.1 )

#123580 Collection of Institut Pasteur ; Curators of the CIP; CIP 110413

#26017

IJSEM 1993 2010 ( DOI 10.1099/ijs.0.017327-0 , PubMed 19801393 )

* These data were automatically processed and therefore are not curated

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Chryseobacterium treverense strain DSM 22251

Chryseobacterium treverense strain DSM 22251

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