Chryseobacterium treverense (DSM 22251, CCUG 57657, CIP 110413)

Name: Chryseobacterium treverense (DSM 22251, CCUG 57657, CIP 110413)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5708

Type strain

Culture col. no. DSM 22251 CCUG 57657 CIP 110413 IMMIB L-1519

NCBI tax ID(s) 631455

Special Collections DSMZ CCUG CIP Literature strains

History <- A. F. Yassin, Inst. Med. Mikrobiol., Univ. Bonn, Germany; IMMIB L-1519 CIP <- 2012, DSMZ <- A.F. Yassin, Bonn Univ., Bonn, Germany: strain IMMIB L-1519

Links

Chryseobacterium treverense DSM 22251 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from human Blood.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 370650

DSM 22251,CCUG 57657,CIP 110413

@ref 20215

Last LPSN update 2026-02-09 11:19:02

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Weeksellaceae

Genus Chryseobacterium

Species Chryseobacterium treverense

Full scientific name Chryseobacterium treverense Yassin et al. 2010

Synonyms (1)

Kaistella treverensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29627	negative	1.4-2.7 µm	0.5-0.6 µm	rod-shaped
123580	negative			rod-shaped
125438	negative				100
125439	negative				100

Pigmentation

29627

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16233	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
16233	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
37593	MEDIUM 45 - for Columbia agar with sheep blood		Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
123580	CIP Medium 45	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
16233	positive	growth	28
29627	positive	growth	05-30
29627	positive	optimum	20
37593	positive	growth	37
61408	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29627	aerobe
61408	aerobe
125439	obligate aerobe	99.3

Spore formation

@ref	Spore formation	Confidence
29627
125438		91.327
125439		99.1

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29627	NaCl	positive	growth	0-6 %
29627	NaCl	positive	optimum	6 %

Observation

29627

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29627	17128 ChEBI	adipate	+	carbon source
29627	16947 ChEBI	citrate	+	carbon source
29627	24265 ChEBI	gluconate	+	carbon source
29627	37684 ChEBI	mannose	+	carbon source
29627	506227 ChEBI	N-acetylglucosamine	+	carbon source
29627	18401 ChEBI	phenylacetate	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29627	acid phosphatase	+	3.1.3.2
29627	alkaline phosphatase	+	3.1.3.1
29627	catalase	+	1.11.1.6
29627	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Fluids	#Blood

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
16233	human Blood		Trier	Germany	DEU	Europe
61408	Human blood	1996-02-01	Trier City	Germany	DEU	Europe
123580	Human, Blood		Trier	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence FN297836 (>99% sequence identity) for Kaistella from Microbeatlas

Aquatic Samples	491
Soil Samples	196
Animal Samples	807
Plant Samples	99
Total Samples	1593

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
16233	yes, in single cases	1	Risk group (German classification) According to TRBA 466
123580		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2687453775 annotated assembly for Kaistella treverensis DSM 22251	contig	GCA_900114045	631455.4	2687453775	631455	76.85

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16233	Chryseobacterium treverens partial 16S rRNA gene, type strain IMMIB L-1519T	FN297836	1523		631455

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Kaistella treverensis DSM 22251
NCBI: GCA_900114045

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.10	no
125439	motility	BacteriaNetⓘ	no	82.00	no
125439	gram_stain	BacteriaNetⓘ	negative	100.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Chryseobacterium treverense strain DSM 22251
PATRIC: 631455.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	yes
125438	anaerobic	anaerobicⓘ	no	96.35	yes
125438	spore-forming	spore-formingⓘ	no	91.33	no
125438	thermophilic	thermophileⓘ	no	98.75	yes
125438	aerobic	aerobicⓘ	yes	87.81	yes
125438	flagellated	motile2+ⓘ	no	89.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genome and description of Chryseobacterium manosquense strain Marseille-Q2069^T sp. nov., a new bacterium isolated from human healthy skin.	Boxberger M, Ben Khedher M, Magnien S, Cassir N, La Scola B.	New Microbes New Infect	10.1016/j.nmni.2020.100805	2020
Phylogeny	Chryseobacterium treverense sp. nov., isolated from a human clinical source.	Yassin AF, Hupfer H, Siering C, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijs.0.017327-0	2009

References

#16233	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22251
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26017	IJSEM 1993 2010 ( DOI 10.1099/ijs.0.017327-0 , PubMed 19801393 )
#29627	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26017
#37593	; Curators of the CIP;
#61408	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57657
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123580	Collection of Institut Pasteur ; Curators of the CIP; CIP 110413
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Chryseobacterium treverense (DSM 22251, CCUG 57657, CIP 110413)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900114045

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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