Name: Chryseobacterium piscicola VQ-6316s
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5704

Type strain:

Species: Chryseobacterium piscicola

Strain Designation: VQ-6316s

Culture col. no.: DSM 21068, CECT 7357, CIP 110179

Strain history: CIP <- 2010, DSMZ <- R. Avendano-Herrera, Lab. Veterquimica, Santiago, Chile: strain VQ-6316s

NCBI tax ID(s): 551459 (species)

SI-ID 364829

CECT 7357, DSM 21068, CIP 110179

Section

Chryseobacterium piscicola VQ-6316s is an obligate aerobe, psychrophilic, Gram-negative animal pathogen that was isolated from diseased Atlantic salmon Salmo salar.

Gram-negative
rod-shaped
animal pathogen
obligate aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium piscicola**
	Full Scientific Name (LPSN)	Chryseobacterium piscicola Ilardi et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29135]	Gram stain	negative
[Ref.: #121840]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.987

[Ref.: #29135]	Cell length	2.55 µm

[Ref.: #29135]	Cell width	1 µm

[Ref.: #29135]	Cell shape	rod-shaped
[Ref.: #121840]	Cell shape	rod-shaped

[Ref.: #29135]	Motility	no
[Ref.: #121840]	Motility	yes
[Ref.: #69480]	Motility	no Confidence in %92.902

[Ref.: #29135]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15541]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #15541]

Culture medium growth

[Ref.: #15541]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15541]

Culture medium composition

expand / minimize

[Ref.: #39757]

Culture medium

MEDIUM 328- for nutrient agar

[Ref.: #39757]

Culture medium growth

[Ref.: #39757]

Culture medium composition

expand / minimize

[Ref.: #121840]

Culture medium

CIP Medium 328

[Ref.: #121840]

Culture medium growth

[Ref.: #121840]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #15541]	growth	15 °C
[Ref.: #29135]	growth	04-28 °C
[Ref.: #29135]	optimum	15 °C
[Ref.: #39757]	growth	15 °C

[Ref.: #15541]	Temperature range	psychrophilic
[Ref.: #29135]	Temperature range	psychrophilic
[Ref.: #39757]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #121840]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29135]		NaCl		growth	0-3	%
[Ref.: #29135]		NaCl		optimum	0.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29135]	esculin ChEBI	+	hydrolysis
[Ref.: #121840]	nitrate ChEBI	-	reduction
[Ref.: #121840]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #121840]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #29135]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #29135]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #29135]	catalase	+	1.11.1.6
[Ref.: #121840]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #29135]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #29135]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121840]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121840]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121840]	12417	-	+	+	+	+	+	+	+	-	-	+	+	-	-	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15541]	Sample type/isolated from	diseased Atlantic salmon Salmo salar
[Ref.: #15541]	Host species	Salmo salar
[Ref.: #15541]	Geographic location (country and/or sea, region)	Region Los Lagos, Osorno
[Ref.: #15541]	Country	Chile
[Ref.: #15541]	Country ISO 3 Code	CHL
[Ref.: #15541]	Continent	Middle and South America

[Ref.: #121840]	Sample type/isolated from	Animal, Diseased Atlantic Salmon, Salmo salar
[Ref.: #121840]	Geographic location (country and/or sea, region)	Los Lagos, Osorno
[Ref.: #121840]	Country	Chile
[Ref.: #121840]	Country ISO 3 Code	CHL
[Ref.: #121840]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Host

#Fishes

#Salmonidae

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU869190 (>99% sequence identity) for Chryseobacterium piscicola subclade from Microbeatlas

Aquatic Samples	564
Soil Samples	322
Animal Samples	1185
Plant Samples	203
Total Samples	2274

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15541]	Pathogenicity (animal)	yes
[Ref.: #15541]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121840]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15541]	Chryseobacterium piscicola strain VQ-6316s 16S ribosomal RNA gene, partial sequence	EU869190	1401	ENA	551459 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chryseobacterium piscicola DSM 21068	GCA_900156685	contig	GenBank	551459 tax ID	*
[Ref.: #66792]	Chryseobacterium piscicola DSM 21068	GCA_002943675	scaffold	GenBank	551459 tax ID	*
[Ref.: #66792]	Chryseobacterium piscicola strain DSM 21068	551459.6	wgs	PATRIC	551459 tax ID	*
[Ref.: #66792]	Chryseobacterium piscicola strain DSM 21068	551459.4	wgs	PATRIC	551459 tax ID	*
[Ref.: #66792]	Chryseobacterium piscicola DSM 21068	2681813514	draft	JGI IMG/M	551459 tax ID	*

[Ref.: #15541]	GC-content	32.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29135]	GC-content	32.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chryseobacterium piscicola DSM 21068 NCBI: GCA_002943675.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chryseobacterium piscicola DSM 21068 NCBI: GCA_002943675.1
[Ref.: #69480]	flagellated	no	96.649	no
[Ref.: #69480]	gram-positive	no	98.242	yes
[Ref.: #69480]	anaerobic	no	99.29	no
[Ref.: #69480]	aerobic	yes	91.434	no
[Ref.: #69480]	halophile	no	96.174	no
[Ref.: #69480]	spore-forming	no	95.636	no
[Ref.: #69480]	glucose-util	yes	88.073	no
[Ref.: #69480]	motile	no	92.051	no
[Ref.: #69480]	glucose-ferment	no	93.15	no
[Ref.: #69480]	thermophile	no	99.355	yes

Availability in culture collections External links

[Ref.: #15541]

Culture collection no.

DSM 21068, CECT 7357, CIP 110179

[Ref.: #75186]

SI-ID 364829

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium caseinilyticum sp. nov., a casein hydrolyzing bacterium isolated from rice plant and emended description of Chryseobacterium piscicola.	Chhetri G, Kim J, Kim I, Kang M, Seo T	Int J Syst Evol Microbiol	10.1099/ijsem.0.004854	2021	*
Phylogeny	Chryseobacterium piscicola sp. nov., isolated from diseased salmonid fish.	Ilardi P, Fernandez J, Avendano-Herrera R	Int J Syst Evol Microbiol	10.1099/ijs.0.007021-0	2009	*

References

#15541

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21068

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29135

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25560 (see below)

#39757 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75186

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID364829.1 )

#121840 Collection of Institut Pasteur ; Curators of the CIP; CIP 110179

#25560

IJSEM 3001 2009 ( DOI 10.1099/ijs.0.007021-0 , PubMed 19643904 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Chryseobacterium piscicola in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Chryseobacterium piscicola DSM 21068

Chryseobacterium piscicola DSM 21068

Change proposal

Change proposal