Name: Chryseobacterium taichungense CC-TWGS1-8
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5680

Type strain:

Species: Chryseobacterium taichungense

Strain Designation: CC-TWGS1-8

Culture col. no.: DSM 17453, CCUG 50001, CIP 108519

Strain history: CIP <- 2004, P. Kämpfer, Giessen, Germany: strain CC-TWGS1-8

NCBI tax ID(s): 295069 (species)

SI-ID 138975

CCUG 50001, CIP 108519, DSM 17453, BCRC 17515, CCRC 17515

Special Collections

Section

When using BacDive for research please cite our paper

Chryseobacterium taichungense CC-TWGS1-8 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from tar-contaminated soil.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium taichungense**
	Full Scientific Name (LPSN)	Chryseobacterium taichungense Shen et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31426]	Gram stain	negative
[Ref.: #123414]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %98.5
[Ref.: #125439]	Gram stain	negative Confidence in %99.9

[Ref.: #31426]	Cell shape	rod-shaped
[Ref.: #123414]	Cell shape	rod-shaped

[Ref.: #31426]	Motility	no
[Ref.: #123414]	Motility	no

[Ref.: #31426]	Pigment production	yes
[Ref.: #123414]	Pigment production	yes
[Ref.: #123414]	Pigment name	Flexirubin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6993]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #6993]

Culture medium growth

[Ref.: #6993]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6993]

Culture medium composition

expand / minimize

[Ref.: #36996]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #36996]

Culture medium growth

[Ref.: #36996]

Culture medium composition

expand / minimize

[Ref.: #123414]

Culture medium

CIP Medium 72

[Ref.: #123414]

Culture medium growth

[Ref.: #123414]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6993]		growth	28 °C
[Ref.: #31426]		growth	11-36 °C
[Ref.: #31426]		optimum	23.5 °C
[Ref.: #36996]		growth	30 °C
[Ref.: #58714]		growth	26-37 °C
[Ref.: #123414]		growth	15-37 °C
[Ref.: #123414]	negative	growth	5 °C
[Ref.: #123414]	negative	growth	41 °C
[Ref.: #123414]	negative	growth	45 °C

	pH	Kind of pH		pH
[Ref.: #31426]			optimum	7.5
[Ref.: #31426]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31426]	Oxygen tolerance	aerobe
[Ref.: #58714]	Oxygen tolerance	aerobe
[Ref.: #123414]	Oxygen tolerance	obligate aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %90.1

[Ref.: #31426]	Ability of spore formation	no
[Ref.: #125438]	Ability of spore formation	no Confidence in %92.416
[Ref.: #125439]	Ability of spore formation	no Confidence in %97.9

	Salt	Tested relation		Salt conc.
[Ref.: #123414]	NaCl		growth	0-2	%
[Ref.: #123414]	NaCl	no	growth	4	%
[Ref.: #123414]	NaCl	no	growth	6	%
[Ref.: #123414]	NaCl	no	growth	8	%
[Ref.: #123414]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #123414]	citrate ChEBI	-	carbon source
[Ref.: #31426]	esculin ChEBI	+	hydrolysis
[Ref.: #123414]	esculin ChEBI	+	hydrolysis
[Ref.: #31426]	glucose ChEBI	+	carbon source
[Ref.: #123414]	hippurate ChEBI	+	hydrolysis
[Ref.: #123414]	malonate ChEBI	-	assimilation
[Ref.: #31426]	maltose ChEBI	+	carbon source
[Ref.: #123414]	nitrate ChEBI	-	builds gas from
[Ref.: #123414]	nitrate ChEBI	-	reduction
[Ref.: #123414]	nitrate ChEBI	-	respiration
[Ref.: #123414]	nitrite ChEBI	-	builds gas from
[Ref.: #123414]	nitrite ChEBI	-	reduction
[Ref.: #31426]	rhamnose ChEBI	+	carbon source
[Ref.: #31426]	ribitol ChEBI	+	carbon source
[Ref.: #31426]	trehalose ChEBI	+	carbon source
[Ref.: #31426]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #123414]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite production	Metabolite	Production
[Ref.: #31426]		indole ChEBI	yes
[Ref.: #123414]		indole ChEBI	yes

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #123414]	acetoin ChEBI	-
[Ref.: #123414]	glucose ChEBI		-
[Ref.: #31426]	indole ChEBI			+

	Enzyme	Enzyme activity	EC number
[Ref.: #31426]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123414]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #31426]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #123414]	amylase	+
[Ref.: #123414]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #123414]	caseinase	+	3.4.21.50
[Ref.: #123414]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31426]	cytochrome oxidase	+	1.9.3.1
[Ref.: #123414]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #123414]	gelatinase	+
[Ref.: #123414]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #123414]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123414]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123414]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123414]	oxidase	+
[Ref.: #123414]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #123414]	tryptophan deaminase	-
[Ref.: #123414]	tween esterase	-
[Ref.: #123414]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #123414]	2786	not determinedn.d.	+	+	-	+	+	-	-	+	-	+	+	-	-	-	-	-	+	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123414]	11250	-	+	+	+	-	+	+	-	+	+	+	+	-	-	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6993]	Sample type/isolated from	tar-contaminated soil
[Ref.: #6993]	Geographic location (country and/or sea, region)	Taichung
[Ref.: #6993]	Country	Taiwan, Province of China
[Ref.: #6993]	Country ISO 3 Code	TWN
[Ref.: #6993]	Continent	Asia

[Ref.: #58714]	Sample type/isolated from	Soil,tar contaminated
[Ref.: #58714]	Country	Taiwan, Province of China
[Ref.: #58714]	Country ISO 3 Code	TWN
[Ref.: #58714]	Continent	Asia

[Ref.: #123414]	Sample type/isolated from	Environment, Oil contaminated soil
[Ref.: #123414]	Country	Taiwan, Province of China
[Ref.: #123414]	Country ISO 3 Code	TWN
[Ref.: #123414]	Continent	Asia
[Ref.: #123414]	Isolation date	2004
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Engineered	#Industrial	#Engineered product
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ843132 (>99% sequence identity) for Chryseobacterium taichungense from Microbeatlas

Aquatic Samples	2
Soil Samples	4
Animal Samples	4
Plant Samples	2
Total Samples	12

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6993]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123414]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6993]	Chryseobacterium taichungense partial 16S rRNA gene, type strain CC-TWGS1-8	AJ843132	1431	GenBank ENA	295069 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chryseobacterium taichungense DSM 17453	GCA_900109935	scaffold	GenBank ENA	295069 tax ID	*
[Ref.: #66792]	Chryseobacterium taichungense strain DSM 17453	295069.10	wgs	PATRIC	295069 tax ID	*
[Ref.: #66792]	Chryseobacterium taichungense DSM 17453	2675903154	draft	JGI IMG/M	295069 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Chryseobacterium taichungense DSM 17453 NCBI: GCA_900109935.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	98.5	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	97.05	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	89.603	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	92.416	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	96.5	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	89	yes

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Chryseobacterium taichungense DSM 17453 NCBI: GCA_900109935
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	97.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	75.4
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.9
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	90.1

Availability in culture collections External links

[Ref.: #6993]

Culture collection no.

DSM 17453, CCUG 50001, CIP 108519

[Ref.: #75162]

SI-ID 138975

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium taichungense sp. nov., isolated from contaminated soil.	Shen FT, Kampfer P, Young CC, Lai WA, Arun AB	Int J Syst Evol Microbiol	10.1099/ijs.0.63514-0	2005	*

References

#6993

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17453

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31426

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27733 (see below)

#36996 ; Curators of the CIP;
#58714 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 50001

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#75162

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID138975.1 )

#123414 Collection of Institut Pasteur ; Curators of the CIP; CIP 108519

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#27733

IJSEM 1301 2005 ( DOI 10.1099/ijs.0.63514-0 , PubMed 15879271 )

* These data were automatically processed and therefore are not curated

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Chryseobacterium taichungense DSM 17453

Chryseobacterium taichungense DSM 17453

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