Chryseobacterium taichungense (DSM 17453, CCUG 50001, CIP 108519)

Name: Chryseobacterium taichungense (DSM 17453, CCUG 50001, CIP 108519)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5680

Type strain

Strain Designation CC-TWGS1-8

Culture col. no. DSM 17453 CCUG 50001 CIP 108519 CC-TWGS1-8

NCBI tax ID(s) 295069

Special Collections DSMZ CCUG CIP Literature strains

History <- P. Kämpfer, Univ. Giessen, Germany <- A. B. Arun; CC-TWGS1-8 CIP <- 2004, P. Kämpfer, Giessen, Germany: strain CC-TWGS1-8

Links

Chryseobacterium taichungense CC-TWGS1-8 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from tar-contaminated soil.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 138975

CCUG 50001,CIP 108519,DSM 17453,BCRC 17515,CCRC 17515

@ref 20215

Last LPSN update 2026-02-09 11:19:01

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Weeksellaceae

Genus Chryseobacterium

Species Chryseobacterium taichungense

Full scientific name Chryseobacterium taichungense Shen et al. 2005

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
31426	negative	rod-shaped
123414	negative	rod-shaped
125438	negative		98.5
125439	negative		99.9

Colony morphology

Pigmentation

@ref	Production	Name
31426
123414		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6993	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
36996	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123414	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
6993	positive	growth	28
31426	positive	growth	11-36
31426	positive	optimum	23.5
36996	positive	growth	30
58714	positive	growth	26-37
123414	positive	growth	15-37
123414	negative	growth	5
123414	negative	growth	41
123414	negative	growth	45

Culture pH

@ref	Ability	Type	PH	PH range
31426	positive	optimum	7.5
31426	positive	growth	6.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31426	aerobe
58714	aerobe
123414	obligate aerobe
125439	obligate aerobe	90.1

Spore formation

@ref	Spore formation	Confidence
31426
125438		92.416
125439		97.9

Halophily

@ref	Salt	Growth	Tested relation	Concentration
123414	NaCl	positive	growth	0-2 %
123414	NaCl		growth	4 %
123414	NaCl		growth	6 %
123414	NaCl		growth	8 %
123414	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
123414	16947 ChEBI	citrate	-	carbon source
31426	4853 ChEBI	esculin	+	hydrolysis
123414	4853 ChEBI	esculin	+	hydrolysis
31426	17234 ChEBI	glucose	+	carbon source
123414	606565 ChEBI	hippurate	+	hydrolysis
123414	15792 ChEBI	malonate	-	assimilation
31426	17306 ChEBI	maltose	+	carbon source
123414	17632 ChEBI	nitrate	-	builds gas from
123414	17632 ChEBI	nitrate	-	reduction
123414	17632 ChEBI	nitrate	-	respiration
123414	16301 ChEBI	nitrite	-	builds gas from
123414	16301 ChEBI	nitrite	-	reduction
31426	26546 ChEBI	rhamnose	+	carbon source
31426	15963 ChEBI	ribitol	+	carbon source
31426	27082 ChEBI	trehalose	+	carbon source
31426	18222 ChEBI	xylose	+	carbon source

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
123414	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
31426	35581 ChEBI	indole
123414	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
123414	15688 ChEBI	acetoin	-
123414	17234 ChEBI	glucose		-
31426	35581 ChEBI	indole			+

Enzymes

@ref	Value	Activity	Ec
31426	acid phosphatase	+	3.1.3.2
68382	acid phosphatase	+	3.1.3.2	from API zym
123414	alcohol dehydrogenase	-	1.1.1.1
31426	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
123414	amylase	+
68382	beta-galactosidase	-	3.2.1.23	from API zym
123414	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
123414	caseinase	+	3.4.21.50
123414	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
31426	cytochrome oxidase	+	1.9.3.1
123414	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
123414	gelatinase	+
123414	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
123414	lipase	-
68382	lipase (C 14)	-		from API zym
123414	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123414	ornithine decarboxylase	-	4.1.1.17
123414	oxidase	+
123414	phenylalanine ammonia-lyase	+	4.3.1.24
68382	trypsin	+	3.4.21.4	from API zym
123414	tryptophan deaminase	-
123414	tween esterase	-
123414	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123414	-	+	+	+	-	+	+	-	+	+	+	+	-	-	-	+	+	+	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
123414	not determinedn.d.	+	+	-	+	+	-	-	+	-	+	+	-	-	-	-	-	+	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	-
#Engineered	#Industrial	#Engineered product
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
6993	tar-contaminated soil	Taichung	Taiwan, Province of China	TWN	Asia
58714	Soil,tar contaminated		Taiwan, Province of China	TWN	Asia
123414	Environment, Oil contaminated soil		Taiwan, Province of China	TWN	Asia	2004

Taxonmaps

69479

Global distribution of 16S sequence AJ843132 (>99% sequence identity) for Chryseobacterium taichungense from Microbeatlas

Aquatic Samples	2
Soil Samples	4
Animal Samples	4
Plant Samples	2
Total Samples	12

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6993	1	Risk group (German classification) According to TRBA 466
123414	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2675903154 annotated assembly for Chryseobacterium taichungense DSM 17453	scaffold	GCA_900109935	295069.10	2675903154	295069	72.74

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6993	Chryseobacterium taichungense partial 16S rRNA gene, type strain CC-TWGS1-8	AJ843132	1431		295069

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Chryseobacterium taichungense DSM 17453
NCBI: GCA_900109935

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.90	no
125439	motility	BacteriaNetⓘ	no	75.40	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	90.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Chryseobacterium taichungense DSM 17453
NCBI: GCA_900109935.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	yes
125438	anaerobic	anaerobicⓘ	no	97.05	no
125438	aerobic	aerobicⓘ	yes	89.60	yes
125438	spore-forming	spore-formingⓘ	no	92.42	no
125438	thermophilic	thermophileⓘ	no	96.50	no
125438	flagellated	motile2+ⓘ	no	89.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Chryseobacterium taichungense sp. nov., isolated from contaminated soil.	Shen FT, Kampfer P, Young CC, Lai WA, Arun AB	Int J Syst Evol Microbiol	10.1099/ijs.0.63514-0	2005

References

#6993	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17453
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27733	IJSEM 1301 2005 ( DOI 10.1099/ijs.0.63514-0 , PubMed 15879271 )
#31426	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27733
#36996	; Curators of the CIP;
#58714	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 50001
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#123414	Collection of Institut Pasteur ; Curators of the CIP; CIP 108519
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Chryseobacterium taichungense (DSM 17453, CCUG 50001, CIP 108519)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900109935

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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