Chryseobacterium jeonii (DSM 17048, IMSNU 14049, JCM 12382)

Name: Chryseobacterium jeonii (DSM 17048, IMSNU 14049, JCM 12382)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5676

Type strain

Strain Designation AT1047

Culture col. no. DSM 17048 IMSNU 14049 JCM 12382 KCTC 12226 AT1047 2 more

NCBI tax ID(s) 266749

Special Collections DSMZ JCM KCTC CIP

History DSMZ <- J. Chun; AT1047 JCM <-- J. Chun AT1047. KCTC <- J Chun, Seoul National Univ. CIP <- 2005, JCM <- 2004, J. Chun, Seoul Univ., Seoul, Korea: strain AT1047

Links

Chryseobacterium jeonii AT1047 is an aerobe, Gram-negative bacterium that was isolated from moss.

Gram-negative aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 130941

JCM 12382,KCTC 12226,CIP 108670,DSM 17048,LMG 24721

@ref 20215

Last LPSN update 2026-05-29 08:26:13

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Weeksellaceae

Genus Chryseobacterium

Species Chryseobacterium jeonii

Full scientific name Chryseobacterium jeonii (Yi et al. 2005) Kämpfer et al. 2009

Synonyms (2)

Kaistella jeonii
Sejongia jeonii

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
67771	negative
120343	negative	rod-shaped
125438			91.5
125438	negative		97.879
125439	negative		99.547

Colony morphology

120343

Hemolysis ability0

Pigmentation

@ref	Production	Name
120343		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6708	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
40060	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
120343	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
6708	positive	growth	10-15
40060	positive	growth	22
67770	positive	growth	15
67771	positive	growth	21.5
120343	positive	growth	5-30
120343	negative	growth	37
120343	negative	growth	41
120343	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
6708	aerobe
67771	aerobe
120343	obligate aerobe
125439	obligate aerobe	99.503

Spore formation

@ref	Spore formation	Confidence
125439		99.051

Halophily

@ref	Salt	Growth	Tested relation	Concentration
120343	NaCl	positive	growth	0-10 %

Observation

@ref	Observation
67770	quinones: MK-6
67771	quinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
120343	16947 ChEBI	citrate	-	carbon source
120343	4853 ChEBI	esculin	+	hydrolysis
120343	606565 ChEBI	hippurate	+	hydrolysis
120343	15792 ChEBI	malonate	-	assimilation
120343	17632 ChEBI	nitrate	-	builds gas from
120343	17632 ChEBI	nitrate	-	reduction
120343	17632 ChEBI	nitrate	-	respiration
120343	16301 ChEBI	nitrite	-	builds gas from
120343	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120343	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
120343	15688 ChEBI	acetoin	-
120343	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
120343	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
120343	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
120343	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
120343	caseinase	+	3.4.21.50
120343	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
120343	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
120343	gamma-glutamyltransferase	+	2.3.2.2
120343	gelatinase	+
120343	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
120343	lipase	+
68382	lipase (C 14)	-		from API zym
120343	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
120343	ornithine decarboxylase	-	4.1.1.17
120343	oxidase	-
120343	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
120343	tryptophan deaminase	-
120343	tween esterase	-
120343	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
120343	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Moss

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6708	moss	King Sejong Station			Australia and Oceania
67771	From moss, a habit of penguin	the Antarctic	Antarctica	ATA	Australia and Oceania
67770	Moss of penguin habitats near the King Sejong Station on King George Island	King George Island	Antarctica	ATA	Antarctica
120343	Terrestrial samples		Antarctica	ATA	Antarctica

Taxonmaps

69479

Global distribution of 16S sequence AY553294 (>99% sequence identity) for Kaistella jeonii from Microbeatlas

Aquatic Samples	304
Soil Samples	67
Animal Samples	193
Plant Samples	28
Total Samples	592

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6708	1	Risk group (German classification) According to TRBA 466
120343	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	56772_F02 assembly for Kaistella jeonii NCTC13459	complete	GCA_900638245	266749.8	8045950272	266749	98.87
67770	ASM81286v1 assembly for Kaistella jeonii DSM 17048	contig	GCA_000812865	266749.4	2639762901	266749	72.07
67770	IMG-taxon 2675903156 annotated assembly for Kaistella jeonii DSM 17048	contig	GCA_900112115	266749.9	2675903156	266749	71.67

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6708	Chryseobacterium jeonii strain AT1047 16S ribosomal RNA gene, partial sequence	AY553294	1438		266749

GC content

@ref	GC-content (mol%)	Method
6708	34.9	sequence analysis
67770	36	high performance liquid chromatography (HPLC)
67771	36.0

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: 56772_F02 assembly for Kaistella jeonii NCTC13459
BV-BRC: 266749.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.50	no
125439	gram_stain	BacteriaNetⓘ	negative	99.55	no
125439	motility	BacteriaNetⓘ	no	81.78	no
125439	spore_formation	BacteriaNetⓘ	no	99.05	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Kaistella jeonii NCTC13459
NCBI: GCA_900638245.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.88	yes
125438	anaerobic	anaerobicⓘ	no	97.70	no
125438	aerobic	aerobicⓘ	yes	88.93	yes
125438	spore-forming	spore-formingⓘ	no	88.67	no
125438	thermophilic	thermophileⓘ	no	99.50	yes
125438	flagellated	motile2+ⓘ	no	91.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Transfer of Sejongia antarctica, Sejongia jeonii and Sejongia marina to the genus Chryseobacterium as Chryseobacterium antarcticum comb. nov., Chryseobacterium jeonii comb. nov. and Chryseobacterium marinum comb. nov.	Kampfer P, Lodders N, Vaneechoutte M, Wauters G	Int J Syst Evol Microbiol	10.1099/ijs.0.009142-0	2009
Phylogeny	Kaistella flava sp. nov., isolated from Antarctic tundra soil, and emended descriptions of Kaistella yonginensis, Kaistella jeonii, Kaistella antarctica and Kaistella chaponensis.	Peng X, Zhang Y, Lu Y, Zhou X, Wei Z, Sun Y, Kuang C, Lu L, Geng Y, Qin K, Liu J, Peng F	Int J Syst Evol Microbiol	10.1099/ijsem.0.004740	2021
Phylogeny	Kaistella gelatinilytica sp. nov., a flavobacterium isolated from Antarctic soil.	Ren X, Jiang P, Liu Z, Liang Y, Li J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004753	2021
Phylogeny	Chryseobacterium salipaludis sp. nov., isolated at a wild ass sanctuary.	Divyasree B, Suresh G, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijsem.0.002536	2017
Phylogeny	Chryseobacterium yonginense sp. nov., isolated from a mesotrophic artificial lake.	Joung Y, Joh K	Int J Syst Evol Microbiol	10.1099/ijs.0.022590-0	2010
Phylogeny	Chryseobacterium chaponense sp. nov., isolated from farmed Atlantic salmon (Salmo salar).	Kampfer P, Fallschissel K, Avendano-Herrera R	Int J Syst Evol Microbiol	10.1099/ijs.0.022004-0	2010
Phylogeny	Sejongia antarctica gen. nov., sp. nov. and Sejongia jeonii sp. nov., isolated from the Antarctic.	Yi H, Yoon HI, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.63273-0	2005

References

#6708	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17048
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#40060	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120343	Collection of Institut Pasteur ; Curators of the CIP; CIP 108670
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Chryseobacterium jeonii (DSM 17048, IMSNU 14049, JCM 12382)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900638245

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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