Name: Chryseobacterium jeonii AT1047
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5676

Type strain:

Species: Chryseobacterium jeonii

Strain Designation: AT1047

Culture col. no.: DSM 17048, IMSNU 14049, JCM 12382, KCTC 12226, CIP 108670, NCTC 13459

Strain history: CIP <- 2005, JCM <- 2004, J. Chun, Seoul Univ., Seoul, Korea: strain AT1047

NCBI tax ID(s): 266749 (species)

SI-ID 130941

JCM 12382, KCTC 12226, CIP 108670, DSM 17048, LMG 24721

Section

Chryseobacterium jeonii AT1047 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from moss.

Gram-negative
aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium jeonii**
	Full Scientific Name (LPSN)	Chryseobacterium jeonii (Yi et al. 2005) Kämpfer et al. 2009

	Synonym	Kaistella jeonii
	Synonym	Sejongia jeonii

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #120343]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.927

[Ref.: #120343]	Cell shape	rod-shaped

[Ref.: #120343]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.883

[Ref.: #120343]	Pigment production	no
[Ref.: #120343]	Pigment name	Flexirubin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6708]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #6708]

Culture medium growth

[Ref.: #6708]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6708]

Culture medium composition

expand / minimize

[Ref.: #40060]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #40060]

Culture medium growth

[Ref.: #40060]

Culture medium composition

expand / minimize

[Ref.: #120343]

Culture medium

CIP Medium 72

[Ref.: #120343]

Culture medium growth

[Ref.: #120343]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6708]		growth	10-15 °C
[Ref.: #40060]		growth	22 °C
[Ref.: #67770]		growth	15 °C
[Ref.: #67771]		growth	21.5 °C
[Ref.: #120343]		growth	5-30 °C
[Ref.: #120343]	no	growth	37 °C
[Ref.: #120343]	no	growth	41 °C
[Ref.: #120343]	no	growth	45 °C

[Ref.: #6708]	Temperature range	psychrophilic
[Ref.: #40060]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic
[Ref.: #67771]	Temperature range	psychrophilic
[Ref.: #120343]	Temperature range	mesophilic
[Ref.: #120343]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6708]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #120343]	Oxygen tolerance	obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.979

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #120343]		NaCl		growth	0-10	%

[Ref.: #67770]	Observation	quinones: MK-6
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #120343]	citrate ChEBI	-	carbon source
[Ref.: #120343]	esculin ChEBI	+	hydrolysis
[Ref.: #120343]	hippurate ChEBI	+	hydrolysis
[Ref.: #120343]	malonate ChEBI	-	assimilation
[Ref.: #120343]	nitrate ChEBI	-	builds gas from
[Ref.: #120343]	nitrate ChEBI	-	reduction
[Ref.: #120343]	nitrate ChEBI	-	respiration
[Ref.: #120343]	nitrite ChEBI	-	builds gas from
[Ref.: #120343]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #120343]		indole ChEBI	yes

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #120343]		acetoin ChEBI	-
[Ref.: #120343]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120343]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120343]	amylase	-
[Ref.: #120343]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120343]	caseinase	+	3.4.21.50
[Ref.: #120343]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #120343]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120343]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #120343]	gelatinase	+
[Ref.: #120343]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #120343]	lipase	+
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120343]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120343]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120343]	oxidase	-
[Ref.: #120343]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120343]	tryptophan deaminase	-
[Ref.: #120343]	tween esterase	-
[Ref.: #120343]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120343]	11375	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6708]	Sample type/isolated from	moss
[Ref.: #6708]	Geographic location (country and/or sea, region)	King Sejong Station
[Ref.: #6708]	Continent	Australia and Oceania

[Ref.: #67771]	Sample type/isolated from	From moss, a habit of penguin
[Ref.: #67771]	Geographic location (country and/or sea, region)	the Antarctic
[Ref.: #67771]	Country	Antarctica
[Ref.: #67771]	Country ISO 3 Code	ATA
[Ref.: #67771]	Continent	Australia and Oceania

[Ref.: #67770]	Sample type/isolated from	Moss of penguin habitats near the King Sejong Station on King George Island
[Ref.: #67770]	Geographic location (country and/or sea, region)	King George Island
[Ref.: #67770]	Country	Antarctica
[Ref.: #67770]	Country ISO 3 Code	ATA
[Ref.: #67770]	Continent	Antarctica

[Ref.: #120343]	Sample type/isolated from	Terrestrial samples
[Ref.: #120343]	Country	Antarctica
[Ref.: #120343]	Country ISO 3 Code	ATA
[Ref.: #120343]	Continent	Antarctica
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Moss

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY553294 (>99% sequence identity) for Kaistella jeonii from Microbeatlas

Aquatic Samples	304
Soil Samples	67
Animal Samples	193
Plant Samples	28
Total Samples	592

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6708]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120343]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6708]	Chryseobacterium jeonii strain AT1047 16S ribosomal RNA gene, partial sequence	AY553294	1438	ENA	266749 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Kaistella jeonii DSM 17048	GCA_000812865	contig	GenBank	266749 tax ID
[Ref.: #67770]	Kaistella jeonii DSM 17048	GCA_900112115	contig	GenBank	266749 tax ID
[Ref.: #66792]	Chryseobacterium jeonii DSM 17048	266749.4	wgs	PATRIC	266749 tax ID	*
[Ref.: #66792]	Chryseobacterium jeonii strain DSM 17048	266749.9	wgs	PATRIC	266749 tax ID	*
[Ref.: #66792]	Chryseobacterium jeonii strain NCTC13459	266749.8	complete	PATRIC	266749 tax ID	*
[Ref.: #66792]	Kaistella jeonii DSM 17048	2675903156	draft	JGI IMG/M	266749 tax ID	*

[Ref.: #6708]	GC-content	34.9 mol%	sequence analysis
[Ref.: #67770]	GC-content	36 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	36.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Kaistella jeonii NCTC13459 NCBI: GCA_900638245.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Kaistella jeonii NCTC13459 NCBI: GCA_900638245.1
[Ref.: #69480]	flagellated	no	97.604	no
[Ref.: #69480]	gram-positive	no	97.799	no
[Ref.: #69480]	anaerobic	no	99.355	no
[Ref.: #69480]	aerobic	yes	88.989	no
[Ref.: #69480]	halophile	no	88.55	no
[Ref.: #69480]	spore-forming	no	95.106	no
[Ref.: #69480]	thermophile	no	99.905	no
[Ref.: #69480]	glucose-util	yes	83.518	no
[Ref.: #69480]	motile	no	94.006	no
[Ref.: #69480]	glucose-ferment	no	92.606	no

Availability in culture collections External links

[Ref.: #6708]

Culture collection no.

DSM 17048, IMSNU 14049, JCM 12382, KCTC 12226, CIP 108670, NCTC 13459

[Ref.: #75158]

SI-ID 130941

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Kaistella flava sp. nov., isolated from Antarctic tundra soil, and emended descriptions of Kaistella yonginensis, Kaistella jeonii, Kaistella antarctica and Kaistella chaponensis.	Peng X, Zhang Y, Lu Y, Zhou X, Wei Z, Sun Y, Kuang C, Lu L, Geng Y, Qin K, Liu J, Peng F	Int J Syst Evol Microbiol	10.1099/ijsem.0.004740	2021	*
Phylogeny	Kaistella gelatinilytica sp. nov., a flavobacterium isolated from Antarctic soil.	Ren X, Jiang P, Liu Z, Liang Y, Li J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004753	2021	*
Phylogeny	Chryseobacterium salipaludis sp. nov., isolated at a wild ass sanctuary.	Divyasree B, Suresh G, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijsem.0.002536	2017	*
Phylogeny	Chryseobacterium yonginense sp. nov., isolated from a mesotrophic artificial lake.	Joung Y, Joh K	Int J Syst Evol Microbiol	10.1099/ijs.0.022590-0	2010	*
Phylogeny	Chryseobacterium chaponense sp. nov., isolated from farmed Atlantic salmon (Salmo salar).	Kampfer P, Fallschissel K, Avendano-Herrera R	Int J Syst Evol Microbiol	10.1099/ijs.0.022004-0	2010	*
Phylogeny	Transfer of Sejongia antarctica, Sejongia jeonii and Sejongia marina to the genus Chryseobacterium as Chryseobacterium antarcticum comb. nov., Chryseobacterium jeonii comb. nov. and Chryseobacterium marinum comb. nov.	Kampfer P, Lodders N, Vaneechoutte M, Wauters G	Int J Syst Evol Microbiol	10.1099/ijs.0.009142-0	2009	*
Phylogeny	Sejongia antarctica gen. nov., sp. nov. and Sejongia jeonii sp. nov., isolated from the Antarctic.	Yi H, Yoon HI, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.63273-0	2005	*

References

#6708

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17048

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#40060 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75158

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID130941.1 )

#120343 Collection of Institut Pasteur ; Curators of the CIP; CIP 108670
* These data were automatically processed and therefore are not curated

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Kaistella jeonii NCTC13459

Kaistella jeonii NCTC13459

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