Name: Winogradskyella thalassocola M-5Alg 9
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5662

Type strain:

Species: Winogradskyella thalassocola

Strain Designation: M-5Alg 9

Culture col. no.: DSM 15363, KCTC 12221, LMG 22492, KMM 3907

Strain history: <- O.I. Nedashkovskaya; KMM 3907

NCBI tax ID(s): 262004 (species)

SI-ID 129370

LMG 22492, DSM 15363, KCTC 12221, CECT 7943

Section

Winogradskyella thalassocola M-5Alg 9 is a psychrophilic, Gram-negative bacterium that was isolated from brown alga Chorda filum.

Gram-negative
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Winogradskyella*
	Species	**Winogradskyella thalassocola**
	Full Scientific Name (LPSN)	Winogradskyella thalassocola Nedashkovskaya et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.947

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5877]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #5877]

Culture medium growth

[Ref.: #5877]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5877]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5877]			growth	21 °C

[Ref.: #5877]

Temperature range

psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.982

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5877]	Sample type/isolated from	brown alga Chorda filum
[Ref.: #5877]	Host species	Chorda filum
[Ref.: #5877]	Geographic location (country and/or sea, region)	Sea of Japan, Troitsa Bay
[Ref.: #5877]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Algae

#Brown Algae

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY521223 (>99% sequence identity) for Winogradskyella thalassocola from Microbeatlas

Aquatic Samples	56
Soil Samples	1
Animal Samples	39
Plant Samples
Total Samples	96

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5877]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5877]	Winogradskyella thalassocola strain KMM 3907 16S ribosomal RNA gene, partial sequence	AY521223	1429	ENA	262004 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Winogradskyella thalassocola DSM 15363	GCA_900099995	scaffold	GenBank	262004 tax ID	*
[Ref.: #66792]	Winogradskyella thalassocola strain DSM 15363	262004.13	wgs	PATRIC	262004 tax ID	*
[Ref.: #66792]	Winogradskyella thalassocola DSM 15363	2634166307	draft	JGI IMG/M	262004 tax ID	*

[Ref.: #5877]

GC-content

35 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Winogradskyella thalassocola DSM 15363 NCBI: GCA_900099995.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Winogradskyella thalassocola DSM 15363 NCBI: GCA_900099995.1
[Ref.: #69480]	flagellated	no	95.243	no
[Ref.: #69480]	gram-positive	no	97.965	no
[Ref.: #69480]	anaerobic	no	99.482	no
[Ref.: #69480]	aerobic	yes	92.334	no
[Ref.: #69480]	halophile	no	78.048	no
[Ref.: #69480]	spore-forming	no	94.789	no
[Ref.: #69480]	glucose-ferment	no	90.871	no
[Ref.: #69480]	thermophile	no	99.732	yes
[Ref.: #69480]	glucose-util	yes	86.561	no
[Ref.: #69480]	motile	no	88.51	no

Availability in culture collections External links

[Ref.: #5877]

Culture collection no.

DSM 15363, KCTC 12221, LMG 22492, KMM 3907

[Ref.: #75144]

SI-ID 129370

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Winogradskyella marina sp. nov., isolated from marine sediment.	Bo J, Song X, Wang S, Du Z	Arch Microbiol	10.1007/s00203-021-02517-x	2021	*
Phylogeny	Winogradskyella ouciana sp. nov., isolated from the hadal seawater of the Mariana Trench.	He X, Liu R, Liang J, Li Y, Zhao X, Ran L, Ahmad W, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijsem.0.004687	2021	*
Phylogeny	Winogradskyella aurantia sp. nov., isolated from a marine solar saltern.	Sun Y, Chen BY, Du ZJ	Antonie Van Leeuwenhoek	10.1007/s10482-017-0897-4	2017	*
Phylogeny	Winogradskyella jejuensis sp. nov., a marine bacterium isolated from a brown alga Carpopeltis affinis.	Kim JY, Oh DC	J Microbiol	10.1007/s12275-012-2447-0	2012	*
Phylogeny	Winogradskyella psychrotolerans sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from Arctic sediment.	Begum Z, Srinivas TNR, Manasa P, Sailaja B, Sunil B, Prasad S, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.044669-0	2012	*
Phylogeny	Winogradskyella damuponensis sp. nov., isolated from seawater.	Lee DH, Cho SJ, Kim SM, Lee SB	Int J Syst Evol Microbiol	10.1099/ijs.0.041384-0	2012	*
Phylogeny	Winogradskyella pacifica sp. nov., a marine bacterium of the family Flavobacteriaceae.	Kim SB, Nedashkovskaya OI	Int J Syst Evol Microbiol	10.1099/ijs.0.016329-0	2009	*
Phylogeny	Winogradskyella rapida sp. nov., isolated from protein-enriched seawater.	Pinhassi J, Nedashkovskaya OI, Hagstrom A, Vancanneyt M	Int J Syst Evol Microbiol	10.1099/ijs.0.008334-0	2009	*
Phylogeny	Winogradskyella thalassocola gen. nov., sp. nov., Winogradskyella epiphytica sp. nov. and Winogradskyella eximia sp. nov., marine bacteria of the family Flavobacteriaceae.	Nedashkovskaya OI, Kim SB, Han SK, Snauwaert C, Vancanneyt M, Swings J, Kim KO, Lysenko AM, Rohde M, Frolova GM, Mikhailov VV, Bae KS	Int J Syst Evol Microbiol	10.1099/ijs.0.63307-0	2005	*

References

#5877

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15363

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75144

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID129370.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Winogradskyella thalassocola in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Winogradskyella thalassocola DSM 15363

Winogradskyella thalassocola DSM 15363

Change proposal

Change proposal