Name: Ulvibacter litoralis DSM 16195
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5658

Type strain:

Species: Ulvibacter litoralis

Variant: Isotype of BacDive ID 5659

Culture col. no.: DSM 16195, CCUG 47093, KCTC 12104, KMM 3912, CIP 108343

Strain history: CIP <- 2004, CCUG <- 2002, KMM

NCBI tax ID(s): 227084 (species)

SI-ID 97552

KCTC 12104, CCUG 47093, CIP 108343, DSM 16195, DSM 19843

Other strains from Ulvibacter litoralis

U. litoralis DSM 19843, CCUG 47093, KCTC 12104, ... (type strain)

Section

Ulvibacter litoralis DSM 16195 is an aerobe, chemoorganotroph, psychrophilic bacterium that forms circular colonies and was isolated from green alga Ulva fenestrata.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
chemoorganotroph
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Ulvibacter*
	Species	**Ulvibacter litoralis**
	Full Scientific Name (LPSN)	Ulvibacter litoralis Nedashkovskaya et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #29967]	Gram stain	negative
[Ref.: #26336]	Gram stain	negative
[Ref.: #120635]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.937

[Ref.: #29967]	Cell length	4.9 µm
[Ref.: #26336]	Cell length	2.5-7.3 µm

[Ref.: #29967]	Cell width	0.45 µm
[Ref.: #26336]	Cell width	0.4-0.5 µm

[Ref.: #29967]	Cell shape	rod-shaped
[Ref.: #26336]	Cell shape	rod-shaped
[Ref.: #120635]	Cell shape	rod-shaped

[Ref.: #29967]	Motility	yes
[Ref.: #26336]	Motility	no
[Ref.: #120635]	Motility	no

[Ref.: #29967]	Flagellum arrangement	gliding

[Ref.: #26336]	Colony size	2-4 mm
[Ref.: #26336]	Colony color	yellow-orange
[Ref.: #26336]	Colony shape	circular
[Ref.: #26336]	Cultivation medium used	Marine agar

[Ref.: #29967]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6318]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6318]

Culture medium growth

[Ref.: #6318]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6318]

Culture medium composition

expand / minimize

[Ref.: #36723]

Culture medium

Marine agar (MA)

[Ref.: #36723]

Culture medium growth

[Ref.: #36723]

Culture medium composition

expand / minimize

[Ref.: #26336]

Culture medium

Marine agar (MA)

[Ref.: #26336]

Culture medium growth

[Ref.: #120635]

Culture medium

CIP Medium 13

[Ref.: #120635]

Culture medium growth

[Ref.: #120635]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6318]		growth	20 °C
[Ref.: #26336]		growth	4-36 °C
[Ref.: #26336]		optimum	21-23 °C
[Ref.: #29967]		optimum	21-23 °C
[Ref.: #29967]		growth	04-36 °C
[Ref.: #36723]		growth	22 °C
[Ref.: #120635]		growth	5-30 °C
[Ref.: #120635]	no	growth	37 °C
[Ref.: #120635]	no	growth	41 °C
[Ref.: #120635]	no	growth	45 °C

[Ref.: #6318]	Temperature range	psychrophilic
[Ref.: #26336]	Temperature range	psychrophilic
[Ref.: #29967]	Temperature range	psychrophilic
[Ref.: #36723]	Temperature range	psychrophilic
[Ref.: #120635]	Temperature range	mesophilic
[Ref.: #120635]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #29967]			optimum	7.1-8.3
[Ref.: #29967]			growth	5.5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29967]	Oxygen tolerance	aerobe
[Ref.: #26336]	Oxygen tolerance	obligate aerobe

[Ref.: #26336]

Nutrition type

chemoorganotroph

[Ref.: #29967]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.979

	Salt	Tested relation		Salt conc.
[Ref.: #29967]	NaCl		growth	01-06	%
[Ref.: #29967]	NaCl		optimum	3.5	%
[Ref.: #26336]	NaCl		growth	1-6	%
[Ref.: #120635]	NaCl		growth	2	%
[Ref.: #120635]	NaCl	no	growth	0	%
[Ref.: #120635]	NaCl	no	growth	4	%
[Ref.: #120635]	NaCl	no	growth	6	%
[Ref.: #120635]	NaCl	no	growth	8	%
[Ref.: #120635]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #26336]	adipate ChEBI	-	assimilation
[Ref.: #26336]	agar ChEBI	-	hydrolysis
[Ref.: #26336]	alginate ChEBI	-	hydrolysis
[Ref.: #26336]	arabinose ChEBI	-	assimilation
[Ref.: #26336]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #26336]	casein	-	hydrolysis
[Ref.: #26336]	cellobiose ChEBI	-	builds acid from
[Ref.: #26336]	cellulose ChEBI	-	hydrolysis
[Ref.: #26336]	chitin ChEBI	-	hydrolysis
[Ref.: #26336]	citrate ChEBI	-	assimilation
[Ref.: #26336]	decanoate ChEBI	-	assimilation
[Ref.: #26336]	dna ChEBI	+	degradation
[Ref.: #120635]	esculin ChEBI	-	hydrolysis
[Ref.: #26336]	fucose ChEBI	-	builds acid from
[Ref.: #26336]	galactitol ChEBI	-	builds acid from
[Ref.: #26336]	galactose ChEBI	-	builds acid from
[Ref.: #26336]	gelatin ChEBI	+	degradation
[Ref.: #26336]	gluconate ChEBI	-	assimilation
[Ref.: #26336]	glucose ChEBI	-	assimilation
[Ref.: #26336]	glycerol ChEBI	-	builds acid from
[Ref.: #120635]	hippurate ChEBI	-	hydrolysis
[Ref.: #26336]	lactose ChEBI	-	assimilation
[Ref.: #26336]	malate ChEBI	-	assimilation
[Ref.: #26336]	malonate ChEBI	-	assimilation
[Ref.: #120635]	malonate ChEBI	-	assimilation
[Ref.: #26336]	maltose ChEBI	-	assimilation
[Ref.: #26336]	mannitol ChEBI	-	assimilation
[Ref.: #26336]	mannose ChEBI	-	assimilation
[Ref.: #26336]	melibiose ChEBI	-	builds acid from
[Ref.: #26336]	myo-inositol ChEBI	-	assimilation
[Ref.: #26336]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #29967]	nitrate ChEBI	+	reduction
[Ref.: #26336]	nitrate ChEBI	+	reduction
[Ref.: #120635]	nitrate ChEBI	-	reduction
[Ref.: #120635]	nitrite ChEBI	-	reduction
[Ref.: #26336]	phenylacetate ChEBI	-	assimilation
[Ref.: #26336]	raffinose ChEBI	-	builds acid from
[Ref.: #26336]	rhamnose ChEBI	-	builds acid from
[Ref.: #26336]	ribitol ChEBI	-	builds acid from
[Ref.: #26336]	sorbitol ChEBI	-	assimilation
[Ref.: #26336]	starch ChEBI	-	hydrolysis
[Ref.: #26336]	sucrose ChEBI	-	assimilation
[Ref.: #26336]	tween 20 ChEBI	+	degradation
[Ref.: #26336]	tween 40 ChEBI	+	degradation
[Ref.: #26336]	tween 80 ChEBI	-	hydrolysis
[Ref.: #26336]	xylose ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #26336]	acetoin ChEBI	no
[Ref.: #26336]	hydrogen sulfide ChEBI	no
[Ref.: #26336]	indole ChEBI	no
[Ref.: #120635]	indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #26336]	acetoin ChEBI	-
[Ref.: #120635]	acetoin ChEBI	-
[Ref.: #120635]	glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120635]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #29967]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120635]	amylase	-
[Ref.: #120635]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120635]	caseinase	+	3.4.21.50
[Ref.: #29967]	catalase	+	1.11.1.6
[Ref.: #120635]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #29967]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120635]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #120635]	gelatinase	+/-
[Ref.: #120635]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #120635]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120635]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120635]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120635]	oxidase	+
[Ref.: #120635]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #120635]	protease	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120635]	tryptophan deaminase	-
[Ref.: #120635]	tween esterase	+
[Ref.: #120635]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120635]	11107	-	+	-	+	-	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	NAD metabolism	94.44	17 of 18
[Ref.: #66794]	starch degradation	90	9 of 10
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	lipoate biosynthesis	80	4 of 5
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	glutamate and glutamine metabolism	78.57	22 of 28
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	lipid metabolism	77.42	24 of 31
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	vitamin B1 metabolism	76.92	10 of 13
[Ref.: #66794]	tryptophan metabolism	76.32	29 of 38
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	purine metabolism	73.4	69 of 94
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	lysine metabolism	69.05	29 of 42
[Ref.: #66794]	pyrimidine metabolism	68.89	31 of 45
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	alanine metabolism	65.52	19 of 29
[Ref.: #66794]	histidine metabolism	65.52	19 of 29
[Ref.: #66794]	heme metabolism	64.29	9 of 14
[Ref.: #66794]	vitamin B6 metabolism	63.64	7 of 11
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	glycine betaine biosynthesis	60	3 of 5
[Ref.: #66794]	arachidonate biosynthesis	60	3 of 5
[Ref.: #66794]	3-chlorocatechol degradation	60	3 of 5
[Ref.: #66794]	flavin biosynthesis	60	9 of 15
[Ref.: #66794]	glycolysis	58.82	10 of 17
[Ref.: #66794]	non-pathway related	57.89	22 of 38
[Ref.: #66794]	methionine metabolism	57.69	15 of 26
[Ref.: #66794]	reductive acetyl coenzyme A pathway	57.14	4 of 7
[Ref.: #66794]	glutathione metabolism	57.14	8 of 14
[Ref.: #66794]	mevalonate metabolism	57.14	4 of 7
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	proline metabolism	54.55	6 of 11
[Ref.: #66794]	pentose phosphate pathway	54.55	6 of 11
[Ref.: #66794]	carotenoid biosynthesis	54.55	12 of 22
[Ref.: #66794]	arginine metabolism	54.17	13 of 24
[Ref.: #66794]	isoprenoid biosynthesis	53.85	14 of 26
[Ref.: #66794]	phenylpropanoid biosynthesis	53.85	7 of 13
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	metabolism of disaccharids	45.45	5 of 11
[Ref.: #66794]	arachidonic acid metabolism	44.44	8 of 18
[Ref.: #66794]	daunorubicin biosynthesis	44.44	4 of 9
[Ref.: #66794]	oxidative phosphorylation	43.96	40 of 91
[Ref.: #66794]	cardiolipin biosynthesis	42.86	3 of 7
[Ref.: #66794]	O-antigen biosynthesis	40	2 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	degradation of sugar alcohols	37.5	6 of 16
[Ref.: #66794]	ascorbate metabolism	36.36	8 of 22
[Ref.: #66794]	phenol degradation	35	7 of 20
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	33.33	2 of 6
[Ref.: #66794]	4-hydroxymandelate degradation	33.33	3 of 9
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	urea cycle	30.77	4 of 13
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	myo-inositol biosynthesis	30	3 of 10
[Ref.: #66794]	degradation of sugar acids	28	7 of 25
[Ref.: #66794]	degradation of hexoses	27.78	5 of 18
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	3-phenylpropionate degradation	26.67	4 of 15
[Ref.: #66794]	polyamine pathway	26.09	6 of 23
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	degradation of pentoses	25	7 of 28
[Ref.: #66794]	androgen and estrogen metabolism	25	4 of 16
[Ref.: #66794]	sulfate reduction	23.08	3 of 13
[Ref.: #66794]	molybdenum cofactor biosynthesis	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6318]	Sample type/isolated from	green alga Ulva fenestrata
[Ref.: #6318]	Host species	Ulva fenestrata
[Ref.: #6318]	Geographic location (country and/or sea, region)	Sea of Japan, Gulf of Peter the Great, Troitsa Bay
[Ref.: #6318]	Country	Russia
[Ref.: #6318]	Country ISO 3 Code	RUS
[Ref.: #6318]	Continent	Asia

[Ref.: #120635]	Sample type/isolated from	Green alga, Ulva fenestrata
[Ref.: #120635]	Country	Sea of Japan
* marker position based on {}

Isolation sources categories

#Host

#Algae

#Green algae

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6318]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #26336]	Biosafety level	1
[Ref.: #120635]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6318]	Bacteroidetes bacterium KMM 3912 16S ribosomal RNA gene, partial sequence	AY243096	1419	ENA	227084 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Ulvibacter litoralis DSM 16195	GCA_900102055	contig	GenBank	227084 tax ID	*
[Ref.: #66792]	Ulvibacter litoralis KCTC 12104	GCA_014651275	contig	GenBank	227084 tax ID	*
[Ref.: #66792]	Ulvibacter litoralis strain DSM 16195	227084.13	wgs	PATRIC	227084 tax ID	*
[Ref.: #66792]	Ulvibacter litoralis strain KCTC 12104	227084.16	wgs	PATRIC	227084 tax ID	*
[Ref.: #66792]	Ulvibacter litoralis DSM 16195	2675903215	draft	JGI IMG/M	227084 tax ID	*

[Ref.: #29967]	GC-content	36.7-38 mol%
[Ref.: #26336]	GC-content	36.7-38 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Ulvibacter litoralis strain KCTC 12104 PATRIC: 227084.16
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ulvibacter litoralis strain DSM 16195 PATRIC: 227084.13
[Ref.: #69480]	motile	no	88.681	yes
[Ref.: #69480]	gram-positive	no	98.306	yes
[Ref.: #69480]	anaerobic	no	99.431	yes
[Ref.: #69480]	aerobic	yes	93.301	yes
[Ref.: #69480]	halophile	yes	57.1	no
[Ref.: #69480]	spore-forming	no	95.651	no
[Ref.: #69480]	glucose-util	yes	80.906	yes
[Ref.: #69480]	flagellated	no	95.193	yes
[Ref.: #69480]	thermophile	no	99.438	yes
[Ref.: #69480]	glucose-ferment	no	89.629	no

Availability in culture collections External links

[Ref.: #6318]

Culture collection no.

DSM 16195, CCUG 47093, KCTC 12104, KMM 3912, CIP 108343

[Ref.: #75141]

SI-ID 97552

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Patiriisocius marinistellae gen. nov., sp. nov., isolated from the starfish Patiria pectinifera, and reclassification of Ulvibacter marinus as a member of the genus Patiriisocius comb. nov.	Kawano K, Ushijima N, Kihara M, Itoh H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004254	2020	*
Phylogeny	Ulvibacter marinus sp. nov., isolated from coastal seawater.	Baek K, Jo H, Choi A, Kang I, Cho JC	Int J Syst Evol Microbiol	10.1099/ijs.0.062398-0	2014	*
Phylogeny	Ulvibacter litoralis gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from the green alga Ulva fenestrata.	Nedashkovskaya OI, Kim SB, Han SK, Rhee MS, Lysenko AM, Falsen E, Frolova GM, Mikhailov VV, Bae KS	Int J Syst Evol Microbiol	10.1099/ijs.0.02757-0	2004	*

References

#6318

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16195

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#26336

IJSEM 119 2004 ( DOI 10.1099/ijs.0.02757-0 , PubMed 14742468 )

#29967

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26336 (see below)

#36723 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75141

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID97552.1 )

#120635 Collection of Institut Pasteur ; Curators of the CIP; CIP 108343

#26336

IJSEM 119 2004 ( DOI 10.1099/ijs.0.02757-0 , PubMed 14742468 )

* These data were automatically processed and therefore are not curated

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Ulvibacter litoralis strain KCTC 12104

Ulvibacter litoralis strain DSM 16195

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