Tenacibaculum maritimum R-2 is an obligate aerobe, Gram-negative, motile animal pathogen that was isolated from diseased red sea bream .
Gram-negative motile rod-shaped obligate aerobe animal pathogen genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Bacteroidota |
| Class Flavobacteriia |
| Order Flavobacteriales |
| Family Flavobacteriaceae |
| Genus Tenacibaculum |
| Species Tenacibaculum maritimum |
| Full scientific name Tenacibaculum maritimum (Wakabayashi et al. 1986) Suzuki et al. 2001 |
| Synonyms (2) |
| BacDive ID | Other strains from Tenacibaculum maritimum (2) | Type strain |
|---|---|---|
| 135276 | T. maritimum B2, CIP 103529, ATCC 43397, NCIMB 2153, JCM ... | |
| 135277 | T. maritimum CIP 103530, NCIMB 2158 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 7325 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | Medium recipe at MediaDive | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water | ||
| 41729 | MEDIUM 35 - for Flexibacter maritimus | Distilled water make up to (300.000 ml);Agar (10.000 g);Yeast extract (0.500 g);Sodium acetate (0.200 g);Tryptone (0.500 g);Beef extract (0.200 g);Synthetic sea solution - M0216 (700.000 ml) | |||
| 120835 | CIP Medium 13 | Medium recipe at CIP | |||
| 120835 | CIP Medium 35 | Medium recipe at CIP |
| @ref | Ability | Type | PH | PH range | |
|---|---|---|---|---|---|
| 43375 | positive | growth | 5.9-8.6 | alkaliphile |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 43375 | 30916 ChEBI | 2-oxoglutarate | - | growth | |
| 43375 | 30089 ChEBI | acetate | - | growth | |
| 43375 | 2509 ChEBI | agar | - | degradation | |
| 43375 | 16150 ChEBI | benzoate | - | growth | |
| 43375 | casamino acids | + | growth | ||
| 43375 | casein | + | degradation | ||
| 43375 | 62968 ChEBI | cellulose | - | degradation | |
| 43375 | 16947 ChEBI | citrate | - | growth | |
| 43375 | 16991 ChEBI | dna | + | degradation | |
| 43375 | 4853 ChEBI | esculin | - | degradation | |
| 43375 | 16236 ChEBI | ethanol | - | growth | |
| 43375 | 29806 ChEBI | fumarate | - | growth | |
| 43375 | 5291 ChEBI | gelatin | - | degradation | |
| 43375 | 17754 ChEBI | glycerol | - | growth | |
| 43375 | 15603 ChEBI | L-leucine | - | growth | |
| 43375 | 30924 ChEBI | L-tartrate | - | growth | |
| 43375 | 25115 ChEBI | malate | - | growth | |
| 43375 | 17790 ChEBI | methanol | - | growth | |
| 43375 | 17632 ChEBI | nitrate | + | reduction | |
| 120835 | 17632 ChEBI | nitrate | - | reduction | |
| 120835 | 16301 ChEBI | nitrite | + | reduction | |
| 43375 | 17272 ChEBI | propionate | - | growth | |
| 43375 | 15361 ChEBI | pyruvate | - | growth | |
| 120835 | 132112 ChEBI | sodium thiosulfate | - | builds gas from | |
| 43375 | 28017 ChEBI | starch | - | degradation | |
| 43375 | 30031 ChEBI | succinate | - | growth | |
| 43375 | tryptone | + | growth | ||
| 43375 | 53426 ChEBI | tween 80 | + | degradation | |
| 43375 | 18186 ChEBI | tyrosine | + | degradation |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | aerobactin biosynthesis | 100 | 1 of 1 | ||
| 66794 | vitamin K metabolism | 100 | 5 of 5 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | sulfopterin metabolism | 100 | 4 of 4 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | reductive acetyl coenzyme A pathway | 100 | 7 of 7 | ||
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | kanosamine biosynthesis II | 100 | 2 of 2 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | biotin biosynthesis | 100 | 4 of 4 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | threonine metabolism | 90 | 9 of 10 | ||
| 66794 | lipid A biosynthesis | 88.89 | 8 of 9 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | C4 and CAM-carbon fixation | 87.5 | 7 of 8 | ||
| 66794 | gluconeogenesis | 87.5 | 7 of 8 | ||
| 66794 | isoleucine metabolism | 87.5 | 7 of 8 | ||
| 66794 | leucine metabolism | 84.62 | 11 of 13 | ||
| 66794 | phenylalanine metabolism | 84.62 | 11 of 13 | ||
| 66794 | vitamin B1 metabolism | 84.62 | 11 of 13 | ||
| 66794 | NAD metabolism | 83.33 | 15 of 18 | ||
| 66794 | methylglyoxal degradation | 80 | 4 of 5 | ||
| 66794 | propionate fermentation | 80 | 8 of 10 | ||
| 66794 | cellulose degradation | 80 | 4 of 5 | ||
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | ||
| 66794 | tetrahydrofolate metabolism | 78.57 | 11 of 14 | ||
| 66794 | citric acid cycle | 78.57 | 11 of 14 | ||
| 66794 | heme metabolism | 78.57 | 11 of 14 | ||
| 66794 | photosynthesis | 78.57 | 11 of 14 | ||
| 66794 | valine metabolism | 77.78 | 7 of 9 | ||
| 66794 | serine metabolism | 77.78 | 7 of 9 | ||
| 66794 | aspartate and asparagine metabolism | 77.78 | 7 of 9 | ||
| 66794 | CO2 fixation in Crenarchaeota | 77.78 | 7 of 9 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | lactate fermentation | 75 | 3 of 4 | ||
| 66794 | CMP-KDO biosynthesis | 75 | 3 of 4 | ||
| 66794 | acetate fermentation | 75 | 3 of 4 | ||
| 66794 | tryptophan metabolism | 73.68 | 28 of 38 | ||
| 66794 | purine metabolism | 72.34 | 68 of 94 | ||
| 66794 | cardiolipin biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | ubiquinone biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | glutamate and glutamine metabolism | 71.43 | 20 of 28 | ||
| 66794 | propanol degradation | 71.43 | 5 of 7 | ||
| 66794 | histidine metabolism | 68.97 | 20 of 29 | ||
| 66794 | pyrimidine metabolism | 68.89 | 31 of 45 | ||
| 66794 | lipid metabolism | 67.74 | 21 of 31 | ||
| 66794 | molybdenum cofactor biosynthesis | 66.67 | 6 of 9 | ||
| 66794 | lysine metabolism | 66.67 | 28 of 42 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | ||
| 66794 | flavin biosynthesis | 66.67 | 10 of 15 | ||
| 66794 | formaldehyde oxidation | 66.67 | 2 of 3 | ||
| 66794 | d-mannose degradation | 66.67 | 6 of 9 | ||
| 66794 | methane metabolism | 66.67 | 2 of 3 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | methionine metabolism | 65.38 | 17 of 26 | ||
| 66794 | tyrosine metabolism | 64.29 | 9 of 14 | ||
| 66794 | vitamin B6 metabolism | 63.64 | 7 of 11 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 62.5 | 5 of 8 | ||
| 66794 | alanine metabolism | 62.07 | 18 of 29 | ||
| 66794 | cysteine metabolism | 61.11 | 11 of 18 | ||
| 66794 | arachidonate biosynthesis | 60 | 3 of 5 | ||
| 66794 | glycolysis | 58.82 | 10 of 17 | ||
| 66794 | arginine metabolism | 58.33 | 14 of 24 | ||
| 66794 | non-pathway related | 57.89 | 22 of 38 | ||
| 66794 | nitrate assimilation | 55.56 | 5 of 9 | ||
| 66794 | pentose phosphate pathway | 54.55 | 6 of 11 | ||
| 66794 | proline metabolism | 54.55 | 6 of 11 | ||
| 66794 | urea cycle | 53.85 | 7 of 13 | ||
| 66794 | sulfate reduction | 53.85 | 7 of 13 | ||
| 66794 | dolichol and dolichyl phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | carotenoid biosynthesis | 50 | 11 of 22 | ||
| 66794 | butanoate fermentation | 50 | 2 of 4 | ||
| 66794 | Entner Doudoroff pathway | 50 | 5 of 10 | ||
| 66794 | dTDPLrhamnose biosynthesis | 50 | 4 of 8 | ||
| 66794 | isoprenoid biosynthesis | 50 | 13 of 26 | ||
| 66794 | cyclohexanol degradation | 50 | 2 of 4 | ||
| 66794 | ethanol fermentation | 50 | 1 of 2 | ||
| 66794 | glycine metabolism | 50 | 5 of 10 | ||
| 66794 | glutathione metabolism | 42.86 | 6 of 14 | ||
| 66794 | mevalonate metabolism | 42.86 | 3 of 7 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 41.67 | 5 of 12 | ||
| 66794 | metabolism of amino sugars and derivatives | 40 | 2 of 5 | ||
| 66794 | gallate degradation | 40 | 2 of 5 | ||
| 66794 | starch degradation | 40 | 4 of 10 | ||
| 66794 | 3-chlorocatechol degradation | 40 | 2 of 5 | ||
| 66794 | lipoate biosynthesis | 40 | 2 of 5 | ||
| 66794 | polyamine pathway | 39.13 | 9 of 23 | ||
| 66794 | phenylpropanoid biosynthesis | 38.46 | 5 of 13 | ||
| 66794 | oxidative phosphorylation | 38.46 | 35 of 91 | ||
| 66794 | degradation of sugar alcohols | 37.5 | 6 of 16 | ||
| 66794 | ketogluconate metabolism | 37.5 | 3 of 8 | ||
| 66794 | degradation of pentoses | 35.71 | 10 of 28 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | cyanate degradation | 33.33 | 1 of 3 | ||
| 66794 | arachidonic acid metabolism | 33.33 | 6 of 18 | ||
| 66794 | glycolate and glyoxylate degradation | 33.33 | 2 of 6 | ||
| 66794 | selenocysteine biosynthesis | 33.33 | 2 of 6 | ||
| 66794 | pantothenate biosynthesis | 33.33 | 2 of 6 | ||
| 66794 | enterobactin biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | sphingosine metabolism | 33.33 | 2 of 6 | ||
| 66794 | ascorbate metabolism | 31.82 | 7 of 22 | ||
| 66794 | phenol degradation | 30 | 6 of 20 | ||
| 66794 | coenzyme M biosynthesis | 30 | 3 of 10 | ||
| 66794 | benzoyl-CoA degradation | 28.57 | 2 of 7 | ||
| 66794 | degradation of hexoses | 27.78 | 5 of 18 | ||
| 66794 | d-xylose degradation | 27.27 | 3 of 11 | ||
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | ||
| 66794 | toluene degradation | 25 | 1 of 4 | ||
| 66794 | catecholamine biosynthesis | 25 | 1 of 4 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 23.08 | 3 of 13 | ||
| 66794 | 4-hydroxymandelate degradation | 22.22 | 2 of 9 |
Global distribution of 16S sequence AB681004 (>99% sequence identity) for Tenacibaculum maritimum subclade from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | MARIT_PRJEB17743 assembly for Tenacibaculum maritimum NCIMB 2154 | complete | 1349785 | 88.71 | ||||
| 124043 | UQ_NCIMB2154T assembly for Tenacibaculum maritimum NCIMB 2154 | complete | 1349785 | 66.55 | ||||
| 66792 | ASM50940v1 assembly for Tenacibaculum maritimum NCIMB 2154 NBRC 15946 | contig | 1349785 | 40.74 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Tenacibaculum maritimum gene for 16S rRNA, partial sequence, strain: NBRC 15946 | AB681004 | 1445 | 107401 | ||
| 20218 | Flexibacter maritimus 16S ribosomal RNA | D14023 | 1283 | 107401 | ||
| 20218 | Tenacibaculum maritimum small subunit ribosomal RNA gene, partial sequence | M64629 | 1468 | 107401 | ||
| 7325 | Tenacibaculum maritimum gene for 16S rRNA, strain:IFO 15946 | AB078057 | 1475 | 1349785 | ||
| 124043 | Tenacibaculum maritimum strain NCIMB 2154 16S ribosomal RNA gene, partial sequence. | KT270382 | 1354 | 107401 |
| 43375 | GC-content (mol%)31.6 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 95.40 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 53.80 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 97.00 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 67.10 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 98.00 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 97.16 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 85.28 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 90.40 | no |
| 125438 | thermophilic | thermophileⓘ | no | 95.17 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 93.51 | yes |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Roseobacter Group Probiotics Exhibit Differential Killing of Fish Pathogenic Tenacibaculum Species. | Tesdorpf JE, Geers AU, Strube ML, Gram L, Bentzon-Tilia M. | Appl Environ Microbiol | 10.1128/aem.02418-21 | 2022 | ||
| Extracts from Wallis Sponges Inhibit Vibrio harveyi Biofilm Formation. | Caudal F, Rodrigues S, Dufour A, Artigaud S, Le Blay G, Petek S, Bazire A. | Microorganisms | 10.3390/microorganisms11071762 | 2023 | ||
| Enzymology | Simultaneous discrimination between 15 fish pathogens by using 16S ribosomal DNA PCR and DNA microarrays. | Warsen AE, Krug MJ, LaFrentz S, Stanek DR, Loge FJ, Call DR. | Appl Environ Microbiol | 10.1128/aem.70.7.4216-4221.2004 | 2004 | |
| Enzymology | Genetic diversity of the biofilm covering Montacuta ferruginosa (Mollusca, bivalvia) as evaluated by denaturing gradient gel electrophoresis analysis and cloning of PCR-amplified gene fragments coding for 16S rRNA. | Gillan DC, Speksnijder AG, Zwart G, De Ridder C. | Appl Environ Microbiol | 10.1128/aem.64.9.3464-3472.1998 | 1998 | |
| Advancements in Characterizing Tenacibaculum Infections in Canada. | Nowlan JP, Lumsden JS, Russell S. | Pathogens | 10.3390/pathogens9121029 | 2020 | ||
| Enzymology | Specific bacterial, archaeal, and eukaryotic communities in tidal-flat sediments along a vertical profile of several meters. | Wilms R, Sass H, Kopke B, Koster J, Cypionka H, Engelen B. | Appl Environ Microbiol | 10.1128/aem.72.4.2756-2764.2006 | 2006 | |
| A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations. | Huang YJ, Kim E, Cox MJ, Brodie EL, Brown R, Wiener-Kronish JP, Lynch SV. | OMICS | 10.1089/omi.2009.0100 | 2010 | ||
| Unveiling Hidden Allies: In Silico Discovery of Prophages in Tenacibaculum Species. | Ramirez C, Romero J. | Antibiotics (Basel) | 10.3390/antibiotics13121184 | 2024 | ||
| Genomic characterization of Tenacibaculum maritimum O-antigen gene cluster and development of a multiplex PCR-based serotyping scheme. | Lopez P, Bridel S, Saulnier D, David R, Magarinos B, Torres BS, Bernardet JF, Duchaud E. | Transbound Emerg Dis | 10.1111/tbed.14637 | 2022 | ||
| Genetics | Genetic diversity and population structure of Tenacibaculum maritimum, a serious bacterial pathogen of marine fish: from genome comparisons to high throughput MALDI-TOF typing. | Bridel S, Bourgeon F, Marie A, Saulnier D, Pasek S, Nicolas P, Bernardet JF, Duchaud E. | Vet Res | 10.1186/s13567-020-00782-0 | 2020 | |
| Tenacibaculum maritimum can boost inflammation in Dicentrarchus labrax upon peritoneal injection but cannot trigger tenacibaculosis disease. | Ferreira IA, Santos P, Moxo JS, Teixeira C, do Vale A, Costas B. | Front Immunol | 10.3389/fimmu.2024.1478241 | 2024 | ||
| Dissecting Cytophagalysin: Structural and Biochemical Studies of a Bacterial Pappalysin-Family Metallopeptidase. | Estevan-Morio E, Ramirez-Larrota JS, Bushi E, Eckhard U. | Biomolecules | 10.3390/biom14121604 | 2024 | ||
| Genomics of Tenacibaculum Species in British Columbia, Canada. | Nowlan JP, Sies AN, Britney SR, Cameron ADS, Siah A, Lumsden JS, Russell S. | Pathogens | 10.3390/pathogens12010101 | 2023 | ||
| Fluid dynamics and cell-bound Psl polysaccharide allows microplastic capture, aggregation and subsequent sedimentation by Pseudomonas aeruginosa in water. | Romero M, Carabelli A, R Swift M, I Smith M. | Environ Microbiol | 10.1111/1462-2920.15916 | 2022 | ||
| Investigation of the Genus Flavobacterium as a Reservoir for Fish-Pathogenic Bacterial Species: the Case of Flavobacterium collinsii. | Lee BH, Nicolas P, Saticioglu IB, Fradet B, Bernardet JF, Rigaudeau D, Rochat T, Duchaud E. | Appl Environ Microbiol | 10.1128/aem.02162-22 | 2023 | ||
| Enzymology | Comparative genomics of Streptococcus parauberis: new target for molecular identification of serotype III. | Torres-Corral Y, Santos Y. | Appl Microbiol Biotechnol | 10.1007/s00253-020-10683-z | 2020 | |
| Enzymology | Quorum Quenching Properties and Probiotic Potentials of Intestinal Associated Bacteria in Asian Sea Bass Lates calcarifer. | Ghanei-Motlagh R, Mohammadian T, Gharibi D, Menanteau-Ledouble S, Mahmoudi E, Khosravi M, Zarea M, El-Matbouli M. | Mar Drugs | 10.3390/md18010023 | 2019 | |
| Enzymology | Simultaneous detection of marine fish pathogens by using multiplex PCR and a DNA microarray. | Gonzalez SF, Krug MJ, Nielsen ME, Santos Y, Call DR. | J Clin Microbiol | 10.1128/jcm.42.4.1414-1419.2004 | 2004 | |
| LPS-Induced Mortality in Zebrafish: Preliminary Characterisation of Common Fish Pathogens. | Santos RA, Cardoso C, Pedrosa N, Goncalves G, Matinha-Cardoso J, Coutinho F, Carvalho AP, Tamagnini P, Oliva-Teles A, Oliveira P, Serra CR. | Microorganisms | 10.3390/microorganisms11092205 | 2023 | ||
| Bacillus spp. Inhibit Edwardsiella tarda Quorum-Sensing and Fish Infection. | Santos RA, Monteiro M, Rangel F, Jerusik R, Saavedra MJ, Carvalho AP, Oliva-Teles A, Serra CR. | Mar Drugs | 10.3390/md19110602 | 2021 | ||
| Enzymology | Dual RNAseq highlights the kinetics of skin microbiome and fish host responsiveness to bacterial infection. | Le Luyer J, Schull Q, Auffret P, Lopez P, Crusot M, Belliard C, Basset C, Carradec Q, Poulain J, Planes S, Saulnier D | Anim Microbiome | 10.1186/s42523-021-00097-1 | 2021 | |
| Genetics | The Complete Genome Sequence of the Fish Pathogen Tenacibaculum maritimum Provides Insights into Virulence Mechanisms. | Perez-Pascual D, Lunazzi A, Magdelenat G, Rouy Z, Roulet A, Lopez-Roques C, Larocque R, Barbeyron T, Gobet A, Michel G, Bernardet JF, Duchaud E | Front Microbiol | 10.3389/fmicb.2017.01542 | 2017 | |
| Genetics | Genotyping of Tenacibaculum maritimum isolates from farmed Atlantic salmon in Western Canada. | Frisch K, Smage SB, Brevik OJ, Duesund H, Nylund A | J Fish Dis | 10.1111/jfd.12687 | 2017 | |
| Metabolism | Acylhomoserine lactone production and degradation by the fish pathogen Tenacibaculum maritimum, a member of the Cytophaga-Flavobacterium-Bacteroides (CFB) group. | Romero M, Avendano-Herrera R, Magarinos B, Camara M, Otero A | FEMS Microbiol Lett | 10.1111/j.1574-6968.2009.01889.x | 2010 | |
| Phylogeny | Spongiiferula fulva gen. nov., sp. nov., a Bacterium of the Family Flavobacteriaceae Isolated from a Marine Sponge. | Yoon J, Adachi K, Kasai H | Curr Microbiol | 10.1007/s00284-016-1022-z | 2016 |
| #7325 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17995 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #41729 | ; Curators of the CIP; |
| #43375 | Makoto Suzuki, Yasuyoshi Nakagawa, Shigeaki Harayama, Satoshi Yamamoto: Phylogenetic analysis and taxonomic study of marine Cytophaga-like bacteria : proposal for Tenacibaculum gen. nov. with Tenacibaculum maritimum comb. nov. and Tenacibaculum ovolyticum comb. nov., and description of Tenacibaculum mesophilum sp. nov. and Tenacibaculum amylolyticum sp. nov.. IJSEM 51: 1639 - 1652 2001 ( DOI 10.1099/00207713-51-5-1639 , PubMed 11594591 ) |
| #52586 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 35198 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #120835 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103528 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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