Name: Tenacibaculum lutimaris TF-26
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5650

Type strain:

Species: Tenacibaculum lutimaris

Strain Designation: TF-26

Culture col. no.: DSM 16505, KCTC 12302, CIP 12302

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 285258 (species)

SI-ID 138045

DSM 16505, KCTC 12302, CIP 12302

Section

Tenacibaculum lutimaris TF-26 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from tidal flat.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Tenacibaculum*
	Species	**Tenacibaculum lutimaris**
	Full Scientific Name (LPSN)	Tenacibaculum lutimaris Yoon et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31371]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.987

[Ref.: #31371]	Cell length	6 µm

[Ref.: #31371]	Cell width	0.5 µm

[Ref.: #31371]	Cell shape	rod-shaped

[Ref.: #31371]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #31371]	Flagellum arrangement	gliding
[Ref.: #67771]	Flagellum arrangement	gliding

[Ref.: #31371]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6382]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6382]

Culture medium growth

[Ref.: #6382]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6382]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6382]	growth	30 °C
[Ref.: #31371]	growth	10-39 °C
[Ref.: #31371]	optimum	33.5 °C
[Ref.: #67771]	growth	30-37 °C

[Ref.: #6382]	Temperature range	mesophilic
[Ref.: #31371]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31371]			optimum	7.5
[Ref.: #31371]			growth	07-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31371]		NaCl		growth	02-03	%
[Ref.: #31371]		NaCl		optimum	2.5	%

[Ref.: #67771]

Observation

quinones: MK-6

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31371]		catalase	+	1.11.1.6
[Ref.: #31371]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6382]	Sample type/isolated from	tidal flat
[Ref.: #6382]	Geographic location (country and/or sea, region)	Yellow Sea, Daepo Beach
[Ref.: #6382]	Country	Republic of Korea
[Ref.: #6382]	Country ISO 3 Code	KOR
[Ref.: #6382]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From tidal flat; Korea
[Ref.: #67771]	Geographic location (country and/or sea, region)	Yellow Sea, Daepo Beach
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY661691 (>99% sequence identity) for Tenacibaculum lutimaris from Microbeatlas

Aquatic Samples	27
Soil Samples
Animal Samples	7
Plant Samples
Total Samples	34

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6382]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6382]	Tenacibaculum lutimaris strain TF-26 16S ribosomal RNA gene, partial sequence	AY661691	1473	ENA	285258 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Tenacibaculum lutimaris DSM 16505	GCA_003610735	scaffold	GenBank	285258 tax ID	*
[Ref.: #66792]	Tenacibaculum lutimaris strain DSM 16505	285258.3	wgs	PATRIC	285258 tax ID	*
[Ref.: #66792]	Tenacibaculum lutimaris DSM 16505 (v2)	2739368073	draft	JGI IMG/M	285258 tax ID	*

[Ref.: #31371]	GC-content	32.6 mol%
[Ref.: #67771]	GC-content	32.3-32.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Tenacibaculum lutimaris DSM 16505 NCBI: GCA_003610735.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Tenacibaculum lutimaris DSM 16505 NCBI: GCA_003610735.1
[Ref.: #69480]	motile	no	88.386	no
[Ref.: #69480]	flagellated	no	96.172	yes
[Ref.: #69480]	gram-positive	no	98.676	yes
[Ref.: #69480]	anaerobic	no	99.56	yes
[Ref.: #69480]	aerobic	yes	93.343	no
[Ref.: #69480]	halophile	no	84.714	no
[Ref.: #69480]	spore-forming	no	96.464	no
[Ref.: #69480]	glucose-util	yes	77.779	no
[Ref.: #69480]	thermophile	no	98.457	yes
[Ref.: #69480]	glucose-ferment	no	92.88	no

Availability in culture collections External links

[Ref.: #6382]

Culture collection no.

DSM 16505, KCTC 12302, CIP 12302

[Ref.: #75133]

SI-ID 138045

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tenacibaculum caenipelagi sp. nov., a member of the family Flavobacteriaceae isolated from tidal flat sediment.	Park S, Yoon JH	Antonie Van Leeuwenhoek	10.1007/s10482-013-9941-1	2013	*
Phylogeny	Tenacibaculum aiptasiae sp. nov., isolated from a sea anemone Aiptasia pulchella.	Wang JT, Chou YJ, Chou JH, Chen CA, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.65437-0	2008	*
Phylogeny	Tenacibaculum adriaticum sp. nov., from a bryozoan in the Adriatic Sea.	Heindl H, Wiese J, Imhoff JF	Int J Syst Evol Microbiol	10.1099/ijs.0.65383-0	2008	*
Phylogeny	Tenacibaculum lutimaris sp. nov., isolated from a tidal flat in the Yellow Sea, Korea.	Yoon JH, Kang SJ, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.63416-0	2005	*

References

#6382

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16505

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31371

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27684 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75133

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID138045.1 )

#27684

IJSEM 793 2005 ( DOI 10.1099/ijs.0.63416-0 , PubMed 15774664 )

* These data were automatically processed and therefore are not curated

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Tenacibaculum lutimaris DSM 16505

Tenacibaculum lutimaris DSM 16505

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