Name: Salegentibacter salinarum ISL-4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5645

Type strain:

Species: Salegentibacter salinarum

Strain Designation: ISL-4

Culture col. no.: DSM 23400, CCUG 54354, KCTC 12975

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 447422 (species)

SI-ID 404079

DSM 23400, CCUG 54354

Section

Salegentibacter salinarum ISL-4 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from marine solar saltern.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Salegentibacter*
	Species	**Salegentibacter salinarum**
	Full Scientific Name (LPSN)	Salegentibacter salinarum Yoon et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32408]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.989

[Ref.: #32408]	Cell length	3.25 µm

[Ref.: #32408]	Cell width	0.65 µm

[Ref.: #32408]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #32408]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #60145]

Incubation period

1-2 days

[Ref.: #32408]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16842]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #16842]

Culture medium growth

[Ref.: #16842]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16842]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16842]	growth	28 °C
[Ref.: #32408]	growth	04-41 °C
[Ref.: #32408]	optimum	30 °C
[Ref.: #60145]	growth	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #16842]	Temperature range	mesophilic
[Ref.: #32408]	Temperature range	mesophilic
[Ref.: #60145]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32408]			optimum	7.5
[Ref.: #32408]			growth	5.5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32408]	Oxygen tolerance	aerobe
[Ref.: #60145]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.971

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32408]		NaCl		growth	02-17	%
[Ref.: #32408]		NaCl		optimum	8	%

[Ref.: #67771]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32408]	esculin ChEBI	+	hydrolysis
[Ref.: #32408]	maltose ChEBI	+	carbon source
[Ref.: #32408]	mannose ChEBI	+	carbon source
[Ref.: #32408]	pyruvate ChEBI	+	carbon source
[Ref.: #32408]	salicin ChEBI	+	carbon source
[Ref.: #32408]	trehalose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32408]		acid phosphatase	+	3.1.3.2
[Ref.: #32408]		alkaline phosphatase	+	3.1.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16842]	Sample type/isolated from	marine solar saltern
[Ref.: #16842]	Geographic location (country and/or sea, region)	Yellow Sea
[Ref.: #16842]	Country	Republic of Korea
[Ref.: #16842]	Country ISO 3 Code	KOR
[Ref.: #16842]	Continent	Asia

[Ref.: #60145]	Sample type/isolated from	Marine solar saltern
[Ref.: #60145]	Sampling date	2005
[Ref.: #60145]	Geographic location (country and/or sea, region)	Yellow Sea
[Ref.: #60145]	Country	Republic of Korea
[Ref.: #60145]	Country ISO 3 Code	KOR
[Ref.: #60145]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From saltern field
[Ref.: #67771]	Geographic location (country and/or sea, region)	the Yellow Sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Condition	#Saline	-
#Engineered	#Industrial	#Industrial production
#Environmental	#Terrestrial	#Coast

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16842]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16842]	Salegentibacter salinarum strain ISL-4 16S ribosomal RNA gene, partial sequence	EF612764	1485	ENA	447422 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Salegentibacter salinarum KCTC 12975	GCA_002833365	contig	GenBank	447422 tax ID	*
[Ref.: #66792]	Salegentibacter salinarum DSM 23400	GCA_900168115	scaffold	GenBank	447422 tax ID	*
[Ref.: #66792]	Salegentibacter salinarum strain DSM 23400	447422.4	wgs	PATRIC	447422 tax ID	*
[Ref.: #66792]	Salegentibacter salinarum strain KCTC 12975	447422.5	wgs	PATRIC	447422 tax ID	*
[Ref.: #66792]	Salegentibacter salinarum DSM 23400	2595698206	draft	JGI IMG/M	447422 tax ID	*

[Ref.: #16842]

GC-content

37.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Salegentibacter salinarum strain KCTC 12975 PATRIC: 447422.5
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salegentibacter salinarum DSM 23400 NCBI: GCA_900168115.1
[Ref.: #69480]	motile	no	87.899	yes
[Ref.: #69480]	flagellated	no	93.379	yes
[Ref.: #69480]	gram-positive	no	98.161	yes
[Ref.: #69480]	anaerobic	no	99.351	no
[Ref.: #69480]	aerobic	yes	90.781	yes
[Ref.: #69480]	halophile	yes	69.506	yes
[Ref.: #69480]	spore-forming	no	93.331	no
[Ref.: #69480]	thermophile	no	99.451	no
[Ref.: #69480]	glucose-util	yes	90.732	no
[Ref.: #69480]	glucose-ferment	no	87.063	no

Availability in culture collections External links

[Ref.: #16842]

Culture collection no.

DSM 23400, CCUG 54354, KCTC 12975

[Ref.: #75128]

SI-ID 404079

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salegentibacter salinarum sp. nov., isolated from a marine solar saltern.	Yoon JH, Lee MH, Kang SJ, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.65448-0	2008	*

References

#16842

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23400

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32408

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28632 (see below)

#60145 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54354

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75128

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404079.1 )

#28632

IJSEM 365 2008 ( DOI 10.1099/ijs.0.65448-0 , PubMed 18218932 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Salegentibacter salinarum in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Salegentibacter salinarum strain KCTC 12975

Salegentibacter salinarum DSM 23400

Change proposal

Change proposal