Salegentibacter salinarum (DSM 23400, CCUG 54354, KCTC 12975)

Name: Salegentibacter salinarum (DSM 23400, CCUG 54354, KCTC 12975)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5645

Type strain

Strain Designation ISL-4

Culture col. no. DSM 23400 CCUG 54354 KCTC 12975 ISL-4

NCBI tax ID(s) 447422

Special Collections DSMZ CCUG KCTC Literature strains

Links

Salegentibacter salinarum ISL-4 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from marine solar saltern.

Gram-negative rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 404079

LMG 27254,KCTC 12975,DSM 23400,CCUG 54354

@ref 20215

Last LPSN update 2025-12-16 09:48:07

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Salegentibacter

Species Salegentibacter salinarum

Full scientific name Salegentibacter salinarum Yoon et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
32408	negative	3.25 µm	0.65 µm	rod-shaped
67771				rod-shaped
67771	negative
125439	negative				96.7
125438	negative				97

Colony morphology

60145

Incubation period1-2 days

Pigmentation

32408

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16842	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16842	positive	growth	28	mesophilic
32408	positive	growth	04-41
32408	positive	optimum	30	mesophilic
60145	positive	growth	30	mesophilic
67771	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH
32408	positive	optimum	7.5
32408	positive	growth	5.5-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32408	aerobe
60145	aerobe
67771	aerobe
125439	obligate aerobe	93.1

Spore formation

@ref	Spore formation	Confidence
125438		90

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32408	NaCl	positive	growth	02-17 %
32408	NaCl	positive	optimum	8 %

Observation

67771

Observationquinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32408	4853 ChEBI	esculin	+	hydrolysis
32408	17306 ChEBI	maltose	+	carbon source
32408	37684 ChEBI	mannose	+	carbon source
32408	15361 ChEBI	pyruvate	+	carbon source
32408	17814 ChEBI	salicin	+	carbon source
32408	27082 ChEBI	trehalose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32408	acid phosphatase	+	3.1.3.2
32408	alkaline phosphatase	+	3.1.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Condition	#Saline	-
#Engineered	#Industrial	#Industrial production
#Environmental	#Terrestrial	#Coast

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
16842	marine solar saltern		Yellow Sea	Republic of Korea	KOR	Asia
60145	Marine solar saltern	2005	Yellow Sea	Republic of Korea	KOR	Asia
67771	From saltern field		the Yellow Sea	Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16842	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2595698206 annotated assembly for Salegentibacter salinarum DSM 23400	scaffold	GCA_900168115	447422.4	2595698206	447422	70.93
66792	ASM283336v1 assembly for Salegentibacter salinarum KCTC 12975	contig	GCA_002833365	447422.5	8048147891	447422	69.93

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16842	Salegentibacter salinarum strain ISL-4 16S ribosomal RNA gene, partial sequence	EF612764	1485		447422

GC content

16842

GC-content (mol%)37.9

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Salegentibacter salinarum DSM 23400
NCBI: GCA_900168115

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	84.80	no
125439	motility	BacteriaNetⓘ	no	71.90	no
125439	gram_stain	BacteriaNetⓘ	negative	96.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Salegentibacter salinarum DSM 23400
NCBI: GCA_900168115.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.00	yes
125438	anaerobic	anaerobicⓘ	no	96.58	no
125438	aerobic	aerobicⓘ	yes	84.90	yes
125438	spore-forming	spore-formingⓘ	no	90.00	no
125438	thermophilic	thermophileⓘ	no	97.92	yes
125438	flagellated	motile2+ⓘ	no	88.51	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salegentibacter salinarum sp. nov., isolated from a marine solar saltern.	Yoon JH, Lee MH, Kang SJ, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.65448-0	2008

References

#16842	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23400
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#32408	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28632 (see below)
#60145	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54354
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Salegentibacter salinarum (DSM 23400, CCUG 54354, KCTC 12975)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900168115

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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