Salegentibacter salarius (DSM 23401, CCUG 54355, KCTC 12974)

Name: Salegentibacter salarius (DSM 23401, CCUG 54355, KCTC 12974)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5644

Type strain

Strain Designation ISL-6

Culture col. no. DSM 23401 CCUG 54355 KCTC 12974 ISL-6

NCBI tax ID(s) 435906

Special Collections DSMZ CCUG KCTC Literature strains

History <- CCUG <- J. H. Yoon, Korea Res. Inst. Biosci. & Biotechnol. (KRIBB), Taejon, South Korea <- JH Yoon, KRIBB

Links

Salegentibacter salarius ISL-6 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from marine solar saltern.

Gram-negative rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 323270

LMG 27253,DSM 23401,KCTC 12974,CCUG 54355

@ref 20215

Last LPSN update 2026-02-09 11:19:01

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Salegentibacter

Species Salegentibacter salarius

Full scientific name Salegentibacter salarius Yoon et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
32282	negative	2.35 µm	0.5 µm	rod-shaped
67771				rod-shaped
67771	negative
125438	negative				96.5
125439	negative				99.7

Colony morphology

60146

Incubation period1-2 days

Pigmentation

32282

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16843	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16843	positive	growth	28	mesophilic
32282	positive	growth	04-41
32282	positive	optimum	30	mesophilic
60146	positive	growth	30	mesophilic
67771	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH
32282	positive	optimum	7.5
32282	positive	growth	7.0-8.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
60146	aerobe
67771	aerobe
125439	obligate aerobe	91.1

Spore formation

@ref	Spore formation	Confidence
125438		91
125439		97.3

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32282	NaCl	positive	growth	02-15 %
32282	NaCl	positive	optimum	8 %

Observation

67771

Observationquinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32282	4853 ChEBI	esculin	+	hydrolysis
32282	28757 ChEBI	fructose	+	carbon source
32282	25115 ChEBI	malate	+	carbon source
32282	16634 ChEBI	raffinose	+	carbon source
32282	17992 ChEBI	sucrose	+	carbon source
32282	53424 ChEBI	tween 20	+	carbon source
32282	53423 ChEBI	tween 40	+	carbon source
32282	53425 ChEBI	tween 60	+	carbon source
32282	53426 ChEBI	tween 80	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32282	acid phosphatase	+	3.1.3.2
32282	alkaline phosphatase	+	3.1.3.1
32282	catalase	+	1.11.1.6
32282	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Condition	#Saline	-
#Engineered	#Industrial	#Industrial production
#Environmental	#Terrestrial	#Coast

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Sampling date
16843	marine solar saltern	Yellow Sea	Republic of Korea	KOR	Asia
60146	Marine solar saltern		Republic of Korea	KOR	Asia	2005
67771	From saltern field	the Yellow Sea	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence EF486353 (>99% sequence identity) for Salegentibacter salarius from Microbeatlas

Aquatic Samples	16
Soil Samples	2
Animal Samples	3
Plant Samples	1
Total Samples	22

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16843	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2595698207 annotated assembly for Salegentibacter salarius DSM 23401	scaffold	GCA_900168265	435906.5	2595698207	435906	69.94
66792	ASM283338v1 assembly for Salegentibacter salarius KCTC 12974	contig	GCA_002833385	435906.6	8117422007	435906	68.35
66792	ASM175242v1 assembly for Salegentibacter salarius KCTC 12974	scaffold	GCA_001752425	435906.4	8066110368	435906	68.16

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16843	Salegentibacter salarius strain ISL-6 16S ribosomal RNA gene, partial sequence	EF486353	1485		435906

GC content

16843

GC-content (mol%)37.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Salegentibacter salarius KCTC 12974
NCBI: GCA_001752425

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.30	no
125439	motility	BacteriaNetⓘ	no	75.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Salegentibacter salarius KCTC 12974
NCBI: GCA_001752425.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.50	no
125438	anaerobic	anaerobicⓘ	no	96.96	yes
125438	aerobic	aerobicⓘ	yes	83.68	no
125438	spore-forming	spore-formingⓘ	no	91.00	no
125438	thermophilic	thermophileⓘ	no	95.92	yes
125438	flagellated	motile2+ⓘ	no	89.75	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome Sequence of Salegentibacter salarius KCTC 12974, Isolated from a Marine Solar Saltern of the Yellow Sea in South Korea.	Xu Y, Liu J, Zheng Q, Liu Y, Jiao N	Genome Announc	10.1128/genomeA.01308-16	2016
Phylogeny	Salegentibacter salarius sp. nov., isolated from a marine solar saltern.	Yoon JH, Jung SY, Kang SJ, Jung YT, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.65253-0	2007

References

#16843	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23401
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28522	IJSEM 2738 2007 ( DOI 10.1099/ijs.0.65253-0 , PubMed 18048717 )
#32282	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28522
#60146	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54355
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Salegentibacter salarius (DSM 23401, CCUG 54355, KCTC 12974)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900168265

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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