Salegentibacter flavus (DSM 17794, CIP 107843, KMM 6000)

Name: Salegentibacter flavus (DSM 17794, CIP 107843, KMM 6000)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5640

Type strain

Strain Designation Fg 69

Variant Isotype of BacDive ID 131115

Culture col. no. DSM 17794 CIP 107843 KMM 6000 Fg 69

NCBI tax ID(s) 287099

Special Collections DSMZ CIP Literature strains

History <- E. P. Ivanova, Swinburne Univ. of Techn., Hawthorn, Australia; Fg 69 CIP <- 2003, E. Ivanova, Swinburne Inst., Victoria, Australia: strain Fg 69 <- N. Gorshkova

Links

Salegentibacter flavus Fg 69 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from sediments.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 291008

DSM 22702,CIP 107843,DSM 17794,LMG 27208

@ref 20215

Last LPSN update 2026-02-09 11:19:00

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Salegentibacter

Species Salegentibacter flavus

Full scientific name Salegentibacter flavus Ivanova et al. 2006

BacDive ID	Other strains from **Salegentibacter flavus** (1)	Type strain
131115	S. flavus Fg 69, DSM 22702, CIP 107843, KMM 6000 (type strain)

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31705	negative	2.5-4 µm	0.5-0.7 µm	rod-shaped
119389	negative			rod-shaped
125439	negative				97.6
125438					94.25
125438	negative				99

Pigmentation

@ref	Production	Name
31705
119389		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7189	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
39952	Marine agar (MA)			Distilled water make up to (1000.000 ml);Marine agar (55.100 g)

Culture temp

@ref	Growth	Type	Temperature (°C)
7189	positive	growth	28
31705	positive	growth	10-35
31705	positive	optimum	22-25
39952	positive	growth	30
119389	positive	growth	15-30
119389	negative	growth	5
119389	negative	growth	37
119389	negative	growth	41
119389	negative	growth	45

Culture pH

@ref	Ability	Type	PH	PH range
31705	positive	optimum	8-8.5
31705	positive	growth	05-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

31705

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
31705
125439		96.8
125438		91.941

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31705	NaCl	positive	growth	03-10 %
31705	NaCl	positive	optimum	3 %
119389	NaCl		growth	0 %
119389	NaCl		growth	2 %
119389	NaCl		growth	4 %
119389	NaCl		growth	6 %
119389	NaCl		growth	8 %
119389	NaCl		growth	10 %

Observation

31705

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
119389	4853 ChEBI	esculin	+	hydrolysis
119389	606565 ChEBI	hippurate	+	hydrolysis
119389	15792 ChEBI	malonate	-	assimilation
119389	17632 ChEBI	nitrate	-	reduction
119389	17632 ChEBI	nitrate	-	respiration
119389	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119389	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
119389	15688 ChEBI	acetoin	-
119389	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
119389	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
119389	amylase	+
68382	beta-galactosidase	-	3.2.1.23	from API zym
119389	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119389	caseinase	+	3.4.21.50
31705	catalase	+	1.11.1.6
119389	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
31705	cytochrome oxidase	+	1.9.3.1
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119389	gamma-glutamyltransferase	+	2.3.2.2
31705	gelatinase	+
119389	gelatinase	+/-
119389	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
119389	lipase	-
68382	lipase (C 14)	-		from API zym
119389	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119389	ornithine decarboxylase	-	4.1.1.17
119389	oxidase	+
119389	phenylalanine ammonia-lyase	+	4.3.1.24
119389	protease	+
68382	trypsin	+	3.4.21.4	from API zym
119389	tryptophan deaminase	-
119389	tween esterase	+
31705	urease	+	3.5.1.5
119389	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	starch degradation	100	10 of 10
66794	acetoin degradation	100	3 of 3
66794	butanoate fermentation	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	threonine metabolism	100	10 of 10
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	kanosamine biosynthesis II	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	sulfopterin metabolism	100	4 of 4
66794	denitrification	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	cellulose degradation	100	5 of 5
66794	vitamin K metabolism	100	5 of 5
66794	gluconeogenesis	100	8 of 8
66794	chorismate metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	peptidoglycan biosynthesis	80	12 of 15
66794	Entner Doudoroff pathway	80	8 of 10
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	lipoate biosynthesis	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	heme metabolism	78.57	11 of 14
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	d-mannose degradation	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	lipid A biosynthesis	77.78	7 of 9
66794	leucine metabolism	76.92	10 of 13
66794	phenylalanine metabolism	76.92	10 of 13
66794	vitamin B1 metabolism	76.92	10 of 13
66794	acetate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	tryptophan metabolism	73.68	28 of 38
66794	purine metabolism	73.4	69 of 94
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glutamate and glutamine metabolism	71.43	20 of 28
66794	propanol degradation	71.43	5 of 7
66794	lipid metabolism	70.97	22 of 31
66794	propionate fermentation	70	7 of 10
66794	lysine metabolism	69.05	29 of 42
66794	histidine metabolism	68.97	20 of 29
66794	octane oxidation	66.67	2 of 3
66794	flavin biosynthesis	66.67	10 of 15
66794	formaldehyde oxidation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	pyrimidine metabolism	66.67	30 of 45
66794	cyanate degradation	66.67	2 of 3
66794	molybdenum cofactor biosynthesis	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	glycolysis	64.71	11 of 17
66794	tyrosine metabolism	64.29	9 of 14
66794	citric acid cycle	64.29	9 of 14
66794	glutathione metabolism	64.29	9 of 14
66794	proline metabolism	63.64	7 of 11
66794	vitamin B6 metabolism	63.64	7 of 11
66794	pentose phosphate pathway	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	arginine metabolism	62.5	15 of 24
66794	alanine metabolism	62.07	18 of 29
66794	cysteine metabolism	61.11	11 of 18
66794	arachidonate biosynthesis	60	3 of 5
66794	methionine metabolism	57.69	15 of 26
66794	reductive acetyl coenzyme A pathway	57.14	4 of 7
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	metabolism of disaccharids	54.55	6 of 11
66794	urea cycle	53.85	7 of 13
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	ethanol fermentation	50	1 of 2
66794	carotenoid biosynthesis	50	11 of 22
66794	phenylmercury acetate degradation	50	1 of 2
66794	ketogluconate metabolism	50	4 of 8
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	pantothenate biosynthesis	50	3 of 6
66794	quinate degradation	50	1 of 2
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	biotin biosynthesis	50	2 of 4
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	mevalonate metabolism	42.86	3 of 7
66794	oxidative phosphorylation	40.66	37 of 91
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	myo-inositol biosynthesis	40	4 of 10
66794	coenzyme M biosynthesis	40	4 of 10
66794	gallate degradation	40	2 of 5
66794	elloramycin biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	polyamine pathway	39.13	9 of 23
66794	sulfate reduction	38.46	5 of 13
66794	d-xylose degradation	36.36	4 of 11
66794	degradation of sugar acids	36	9 of 25
66794	degradation of pentoses	35.71	10 of 28
66794	degradation of hexoses	33.33	6 of 18
66794	IAA biosynthesis	33.33	1 of 3
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	sphingosine metabolism	33.33	2 of 6
66794	enterobactin biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	ascorbate metabolism	27.27	6 of 22
66794	cholesterol biosynthesis	27.27	3 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	carnitine metabolism	25	2 of 8
66794	catecholamine biosynthesis	25	1 of 4
66794	degradation of sugar alcohols	25	4 of 16
66794	lactate fermentation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	nitrate assimilation	22.22	2 of 9
66794	arachidonic acid metabolism	22.22	4 of 18
66794	vitamin B12 metabolism	20.59	7 of 34

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119389	-	+	+	+	-	+	+	-	+	-	-	+	-	-	-	-	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
7189	sediments	Sea of Japan, Chazhma Bay	Russia	RUS	Asia
119389	Environment, Sediment sample		Japan	JPN	Asia	2002

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7189	1	Risk group (German classification) According to TRBA 466
119389	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2599185209 annotated assembly for Salegentibacter flavus DSM 17794	scaffold	GCA_900115145	287099.4	2599185209	287099	67.48

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7189	Salegentibacter flavus strain Fg 69 16S ribosomal RNA gene, partial sequence	AY682200	1471		287099

GC content

@ref	GC-content (mol%)	Method
7189	40.4
7189	39.8	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Salegentibacter flavus DSM 17794
NCBI: GCA_900115145

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.80	no
125439	motility	BacteriaNetⓘ	no	77.00	no
125439	gram_stain	BacteriaNetⓘ	negative	97.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	71.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Salegentibacter flavus DSM 17794
NCBI: GCA_900115145.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	yes
125438	anaerobic	anaerobicⓘ	no	94.77	yes
125438	aerobic	aerobicⓘ	yes	83.65	yes
125438	spore-forming	spore-formingⓘ	no	91.94	yes
125438	thermophilic	thermophileⓘ	no	98.47	no
125438	flagellated	motile2+ⓘ	no	94.25	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salegentibacter flavus sp. nov.	Ivanova EP, Bowman JP, Christen R, Zhukova NV, Lysenko AM, Gorshkova NM, Mitik-Dineva N, Sergeev AF, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.64087-0	2006

References

#7189	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17794
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27982	IJSEM 583 2006 ( DOI 10.1099/ijs.0.64087-0 , PubMed 16514031 )
#31705	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27982
#39952	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68382	Automatically annotated from API zym .
#119389	Collection of Institut Pasteur ; Curators of the CIP; CIP 107843
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Salegentibacter flavus (DSM 17794, CIP 107843, KMM 6000)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900115145

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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