Salegentibacter salegens (DSM 5424, ACAM 48, ATCC 51522)

Name: Salegentibacter salegens (DSM 5424, ACAM 48, ATCC 51522)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5639

Type strain

Culture col. no. DSM 5424 ACAM 48 ATCC 51522 CCUG 33447 LMG 13193 1 more

NCBI tax ID(s) 143223

Special Collections DSMZ CCUG CIP

History <- P.D. Franzmann <- S.J. Dobson <- R. Garric CIP <- 1994, ACAM <- S.J. Dobson

Links

Salegentibacter salegens DSM 5424 is a Gram-negative, rod-shaped bacterium of the family Flavobacteriaceae.

Gram-negative rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 7702

LMG 13193,ATCC 51522,CCUG 33447,CIP 104041,DSM 5424,NCIMB 13461,KCTC 2918,KCTC 12119

@ref 20215

Last LPSN update 2026-02-09 11:19:00

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Salegentibacter

Species Salegentibacter salegens

Full scientific name Salegentibacter salegens (Dobson et al. 1993) McCammon and Bowman 2000

Synonyms (1)

Flavobacterium salegens

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
122363	negative	rod-shaped
125438	negative		98
125439	negative		93.2

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
2161	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
34460	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
122363	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
2161	positive	growth	28
34460	positive	growth	30
51525	positive	growth	30
122363	positive	growth	10-30
122363	negative	growth	5
122363	negative	growth	37
122363	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	91

Spore formation

@ref	Spore formation	Confidence
125438		91

Halophily

@ref	Salt	Tested relation	Concentration
122363	NaCl	growth	0 %
122363	NaCl	growth	2 %
122363	NaCl	growth	4 %
122363	NaCl	growth	6 %
122363	NaCl	growth	8 %
122363	NaCl	growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
122363	4853 ChEBI	esculin	+	hydrolysis
122363	17632 ChEBI	nitrate	+	reduction
122363	16301 ChEBI	nitrite	-	reduction
122363	132112 ChEBI	sodium thiosulfate	-	builds gas from

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122363	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
122363	alcohol dehydrogenase	-	1.1.1.1
122363	beta-galactosidase	+	3.2.1.23
122363	catalase	+	1.11.1.6
122363	DNase	+
122363	gelatinase	-
122363	lecithinase	-
122363	lysine decarboxylase	-	4.1.1.18
122363	ornithine decarboxylase	-	4.1.1.17
122363	oxidase	+
122363	tryptophan deaminase	-
122363	urease	-	3.5.1.5

Fatty acid profile

Metadata FA analysis

@ref

51525

Fatty acid	Percentage	ECL
C15:1 ISO G	11	14.441
C17:0 iso 3OH	10.6	18.161
C16:1 ω7c	9.5	15.819
C15:0 ISO	8.3	14.621
C15:0 ANTEISO	7.2	14.711
C16:1 ω7c/C15:0 ISO 2OH	6.7	15.85
C17:0 2OH	5.8	18.249
C17:1 ω6c	5.1	16.862
C16:0 iso	4.2	15.626
C16:0 iso 3OH	3.7	17.145
C17:1 ω9c ISO	3.5	16.416
Unidentified	3.5	15.947
C16:1 ISO H	3	15.461
C15:0	2.9	15
C15:0 2OH	2.7	16.217
C15:1 ω6c	2.2	14.856
C15:0 ISO 3OH	2	16.135
C17:1 ω9c ANTEISO	1.9	16.525
C15:0 3OH	1.2	16.504
C15:1 ANTEISO A	1.2	14.526
C16:0 3OH	1.2	17.52
unknown 13.566	1	13.566
unknown 16.580	1	16.58
C16:0	0.7	16

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
122363	not determinedn.d.	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Geographic location	Country	Country ISO 3 Code	Continent	Sample type
34460		Antarctica	ATA	Antarctica
51525	Vestfold Hills	Antarctica	ATA	Australia and Oceania
122363		Antarctica	ATA	Antarctica	Environment, Organic lake

Taxonmaps

69479

Global distribution of 16S sequence M92279 (>99% sequence identity) for Salegentibacter salegens from Microbeatlas

Aquatic Samples	646
Soil Samples	55
Animal Samples	43
Plant Samples	11
Total Samples	755

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
2161	1	Risk group (German classification) According to TRBA 466
122363	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	IMG-taxon 2698536943 annotated assembly for Salegentibacter salegens ACAM 48	chromosome	GCA_900142975	143223.3	2698536943	143223	89.29
66792	ASM300189v1 assembly for Salegentibacter salegens DSM 5424	scaffold	GCA_003001895	143223.5	2593339299	143223	59.45

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Flavobacterium salegens 16S ribosomal RNA gene	M92279	1471		143223

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Salegentibacter salegens DSM 5424
NCBI: GCA_003001895

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	84.00	no
125439	motility	BacteriaNetⓘ	no	64.50	no
125439	gram_stain	BacteriaNetⓘ	negative	93.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Salegentibacter salegens DSM 5424
NCBI: GCA_003001895.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	94.79	no
125438	aerobic	aerobicⓘ	yes	86.22	no
125438	spore-forming	spore-formingⓘ	no	91.00	no
125438	thermophilic	thermophileⓘ	no	96.57	yes
125438	flagellated	motile2+ⓘ	no	89.92	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salegentibacter mishustinae sp. nov., isolated from the sea urchin Strongylocentrotus intermedius.	Nedashkovskaya OI, Kim SB, Lysenko AM, Mikhailov VV, Bae KS, Kim IS	Int J Syst Evol Microbiol	10.1099/ijs.0.63297-0	2005
Phylogeny	Salegentibacter holothuriorum sp. nov., isolated from the edible holothurian Apostichopus japonicus.	Nedashkovskaya OI, Suzuki M, Vancanneyt M, Cleenwerck I, Zhukova NV, Vysotskii MV, Mikhailov VV, Swings J	Int J Syst Evol Microbiol	10.1099/ijs.0.02987-0	2004
Phylogeny	Direct sequencing of the polymerase chain reaction-amplified 16S rRNA gene of Flavobacterium gondwanense sp. nov. and Flavobacterium salegens sp. nov., two new species from a hypersaline Antarctic lake.	Dobson SJ, Colwell RR, McMeekin TA, Franzmann PD	Int J Syst Bacteriol	10.1099/00207713-43-1-77	1993

References

#2161	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5424
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#34460	; Curators of the CIP;
#51525	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 33447
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122363	Collection of Institut Pasteur ; Curators of the CIP; CIP 104041
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Salegentibacter salegens (DSM 5424, ACAM 48, ATCC 51522)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile

API biotype100

Isolation, sampling and environmental information

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900142975

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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