Name: Salegentibacter salegens DSM 5424
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5639

Type strain:

Species: Salegentibacter salegens

Culture col. no.: DSM 5424, ACAM 48, ATCC 51522, CCUG 33447, LMG 13193, CIP 104041

Strain history: CIP <- 1994, ACAM <- S.J. Dobson

NCBI tax ID(s): 143223 (species)

SI-ID 7702

LMG 13193, ATCC 51522, CCUG 33447, CIP 104041, DSM 5424, NCIMB 13461, KCTC 2918, KCTC 12119

Section

Salegentibacter salegens DSM 5424 is a mesophilic, Gram-negative bacterium of the family Flavobacteriaceae.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Salegentibacter*
	Species	**Salegentibacter salegens**
	Full Scientific Name (LPSN)	Salegentibacter salegens (Dobson et al. 1993) McCammon and Bowman 2000

Synonym

Flavobacterium salegens

Information on morphological and physiological properties Morphology

[Ref.: #122363]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.983

[Ref.: #122363]	Cell shape	rod-shaped

[Ref.: #122363]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2161]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #2161]

Culture medium growth

[Ref.: #2161]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2161]

Culture medium composition

expand / minimize

[Ref.: #34460]

Culture medium

Marine agar (MA)

[Ref.: #34460]

Culture medium growth

[Ref.: #34460]

Culture medium composition

expand / minimize

[Ref.: #122363]

Culture medium

CIP Medium 13

[Ref.: #122363]

Culture medium growth

[Ref.: #122363]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #2161]		growth	28 °C
[Ref.: #34460]		growth	30 °C
[Ref.: #51525]		growth	30 °C
[Ref.: #122363]		growth	10-30 °C
[Ref.: #122363]	no	growth	5 °C
[Ref.: #122363]	no	growth	37 °C
[Ref.: #122363]	no	growth	41 °C

[Ref.: #2161]	Temperature range	mesophilic
[Ref.: #34460]	Temperature range	mesophilic
[Ref.: #51525]	Temperature range	mesophilic
[Ref.: #122363]	Temperature range	psychrophilic
[Ref.: #122363]	Temperature range	mesophilic
[Ref.: #122363]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Salt	Tested relation		Salt conc.
[Ref.: #122363]	NaCl	no	growth	0	%
[Ref.: #122363]	NaCl	no	growth	2	%
[Ref.: #122363]	NaCl	no	growth	4	%
[Ref.: #122363]	NaCl	no	growth	6	%
[Ref.: #122363]	NaCl	no	growth	8	%
[Ref.: #122363]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #122363]	esculin ChEBI	+	hydrolysis
[Ref.: #122363]	nitrate ChEBI	+	reduction
[Ref.: #122363]	nitrite ChEBI	-	reduction
[Ref.: #122363]	sodium thiosulfate ChEBI	-	builds gas from

	Metabolite production	Metabolite	Production
[Ref.: #122363]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #122363]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #122363]	beta-galactosidase	+	3.2.1.23
[Ref.: #122363]	catalase	+	1.11.1.6
[Ref.: #122363]	DNase	+
[Ref.: #122363]	gelatinase	-
[Ref.: #122363]	lecithinase	-
[Ref.: #122363]	lysine decarboxylase	-	4.1.1.18
[Ref.: #122363]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122363]	oxidase	+
[Ref.: #122363]	tryptophan deaminase	-
[Ref.: #122363]	urease	-	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #51525]

Fatty acid	Percentage	ECL
C15:1 ISO G	11	14.441
C17:0 iso 3OH	10.6	18.161
C16:1 ω7c	9.5	15.819
C15:0 ISO	8.3	14.621
C15:0 ANTEISO	7.2	14.711
C16:1 ω7c/C15:0 ISO 2OH	6.7	15.85
C17:0 2OH	5.8	18.249
C17:1 ω6c	5.1	16.862
C16:0 iso	4.2	15.626
C16:0 iso 3OH	3.7	17.145
C17:1 ω9c ISO	3.5	16.416
Unidentified	3.5	15.947
C16:1 ISO H	3	15.461
C15:0	2.9	15
C15:0 2OH	2.7	16.217
C15:1 ω6c	2.2	14.856
C15:0 ISO 3OH	2	16.135
C17:1 ω9c ANTEISO	1.9	16.525
C15:0 3OH	1.2	16.504
C15:1 ANTEISO A	1.2	14.526
C16:0 3OH	1.2	17.52
unknown 13.566	1	13.566
unknown 16.580	1	16.58
C16:0	0.7	16

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122363]	533	not determinedn.d.	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #122363]	Sample type/isolated from	Environment, Organic lake
[Ref.: #122363]	Country	Antarctica
[Ref.: #122363]	Country ISO 3 Code	ATA
[Ref.: #122363]	Continent	Antarctica

[Ref.: #51525]	Geographic location (country and/or sea, region)	Vestfold Hills
[Ref.: #51525]	Country	Antarctica
[Ref.: #51525]	Country ISO 3 Code	ATA
[Ref.: #51525]	Continent	Australia and Oceania

[Ref.: #34460]	Country	Antarctica
[Ref.: #34460]	Country ISO 3 Code	ATA
[Ref.: #34460]	Continent	Antarctica
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence M92279 (>99% sequence identity) for Salegentibacter salegens from Microbeatlas

Aquatic Samples	646
Soil Samples	55
Animal Samples	43
Plant Samples	11
Total Samples	755

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2161]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122363]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Flavobacterium salegens 16S ribosomal RNA gene	M92279	1471	ENA	143223 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Salegentibacter salegens DSM 5424	GCA_003001895	scaffold	GenBank	143223 tax ID	*
[Ref.: #66792]	Salegentibacter salegens strain DSM 5424	143223.5	wgs	PATRIC	143223 tax ID	*
[Ref.: #66792]	Salegentibacter salegens DSM 5424	2593339299	draft	JGI IMG/M	143223 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Salegentibacter salegens strain DSM 5424 PATRIC: 143223.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salegentibacter salegens DSM 5424 NCBI: GCA_003001895.1
[Ref.: #69480]	flagellated	no	94.418	no
[Ref.: #69480]	gram-positive	no	98.42	no
[Ref.: #69480]	anaerobic	no	99.242	no
[Ref.: #69480]	aerobic	yes	89.037	no
[Ref.: #69480]	halophile	yes	68.761	no
[Ref.: #69480]	spore-forming	no	94.679	no
[Ref.: #69480]	glucose-util	yes	89.65	no
[Ref.: #69480]	thermophile	no	98.945	yes
[Ref.: #69480]	motile	no	88.862	no
[Ref.: #69480]	glucose-ferment	no	88.909	no

Availability in culture collections External links

[Ref.: #2161]

Culture collection no.

DSM 5424, ACAM 48, ATCC 51522, CCUG 33447, LMG 13193, CIP 104041

[Ref.: #75122]

SI-ID 7702

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salegentibacter mishustinae sp. nov., isolated from the sea urchin Strongylocentrotus intermedius.	Nedashkovskaya OI, Kim SB, Lysenko AM, Mikhailov VV, Bae KS, Kim IS	Int J Syst Evol Microbiol	10.1099/ijs.0.63297-0	2005	*
Phylogeny	Salegentibacter holothuriorum sp. nov., isolated from the edible holothurian Apostichopus japonicus.	Nedashkovskaya OI, Suzuki M, Vancanneyt M, Cleenwerck I, Zhukova NV, Vysotskii MV, Mikhailov VV, Swings J	Int J Syst Evol Microbiol	10.1099/ijs.0.02987-0	2004	*
Phylogeny	Direct sequencing of the polymerase chain reaction-amplified 16S rRNA gene of Flavobacterium gondwanense sp. nov. and Flavobacterium salegens sp. nov., two new species from a hypersaline Antarctic lake.	Dobson SJ, Colwell RR, McMeekin TA, Franzmann PD	Int J Syst Bacteriol	10.1099/00207713-43-1-77	1993	*

References

#2161

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5424

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#34460 ; Curators of the CIP;
#51525 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 33447

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75122

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID7702.1 )

#122363 Collection of Institut Pasteur ; Curators of the CIP; CIP 104041
* These data were automatically processed and therefore are not curated

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Salegentibacter salegens strain DSM 5424

Salegentibacter salegens DSM 5424

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