Psychroserpens burtonensis (DSM 12212, ACAM 188, ATCC 700359)

Name: Psychroserpens burtonensis (DSM 12212, ACAM 188, ATCC 700359)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5631

Type strain

Culture col. no. DSM 12212 ACAM 188 ATCC 700359 CIP 105822

NCBI tax ID(s) 1123037 49278

Special Collections DSMZ CIP

Links

Psychroserpens burtonensis DSM 12212 is a psychrophilic, Gram-negative, rod-shaped prokaryote that was isolated from water.

Gram-negative rod-shaped psychrophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 43891

ATCC 700359,DSM 12212,LMG 22918,CIP 105822

@ref 20215

Last LPSN update 2025-12-16 09:48:07

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Psychroserpens

Species Psychroserpens burtonensis

Full scientific name Psychroserpens burtonensis Bowman et al. 1997

Morphology

Cell morphology

@ref	Gram stain	Cell shape
117078	negative	rod-shaped
125439	negative
125438
125438	negative

Multimedia

@ref:	66793
multimedia content:	EM_DSM_12212_1.jpg
multimedia.multimedia content:	EM_DSM_12212_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_12212_2.jpg
multimedia.multimedia content:	EM_DSM_12212_2.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_12212_3.jpg
multimedia.multimedia content:	EM_DSM_12212_3.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_12212_4.jpg
multimedia.multimedia content:	EM_DSM_12212_4.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_12212_5.jpg
multimedia.multimedia content:	EM_DSM_12212_5.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
4643	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
36203	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
117078	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
4643	positive	growth	10-15	psychrophilic
36203	positive	growth	15	psychrophilic
117078	positive	growth	15-30
117078	negative	growth	5
117078	negative	growth	37
117078	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.371
125439	obligate aerobe	97.5

Spore formation

@ref	Spore formation	Confidence
125439		97.7
125438		92.333

Halophily

@ref	Salt	Tested relation	Concentration
117078	NaCl	growth	0 %
117078	NaCl	growth	2 %
117078	NaCl	growth	4 %
117078	NaCl	growth	6 %
117078	NaCl	growth	8 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
117078	4853 ChEBI	esculin	-	hydrolysis
117078	17632 ChEBI	nitrate	-	reduction
117078	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
117078	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
117078	15688 ChEBI	acetoin	-
117078	17234 ChEBI	glucose

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
117078	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
117078	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
117078	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
117078	caseinase	+	3.4.21.50
117078	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
117078	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
117078	gamma-glutamyltransferase	-	2.3.2.2
117078	gelatinase	+
117078	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
117078	lipase	-
68382	lipase (C 14)	-		from API zym
117078	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
117078	ornithine decarboxylase	-	4.1.1.17
117078	oxidase	+
117078	phenylalanine ammonia-lyase	+	4.3.1.24
68382	trypsin	+	3.4.21.4	from API zym
117078	tryptophan deaminase	-
117078	tween esterase	+
117078	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
117078	-	+	+	-	-	+	+	+	+	+	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Aquatic

Isolation

@ref	Sample type	Geographic location	Continent
4643	water	Buton Lake, 10.4m depth, Vestfold Hills	Australia and Oceania
117078	Environment, Water samples	Burton lake	Antarctica

Taxonmaps

69479

Global distribution of 16S sequence NR_029190 (>99% sequence identity) for Psychroserpens burtonensis subclade from Microbeatlas

Aquatic Samples	77
Soil Samples	16
Animal Samples	4
Plant Samples
Total Samples	97

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4643	1	Risk group (German classification) According to TRBA 466
117078	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM42530v1 assembly for Psychroserpens burtonensis DSM 12212	scaffold	GCA_000425305	1123037.4	2524023130	1123037	64

Genome browser: GCA_000425305

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Psychroserpens burtonensis ACAM188 16s ribosomal RNA gene, partial sequence	U62913	1484		49278
4643	Psychroserpens burtonensis strain ACAM 188 16S ribosomal RNA, partial sequence	NR_029190	1484		49278

GC content

@ref	GC-content (mol%)	Method
4643	33.4	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Psychroserpens burtonensis DSM 12212
NCBI: GCA_000425305

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.50	no
125439	gram_stain	BacteriaNetⓘ	negative	99.50	no
125439	motility	BacteriaNetⓘ	no	70.90	no
125439	spore_formation	BacteriaNetⓘ	no	97.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Psychroserpens burtonensis DSM 12212 DSM 12212
NCBI: GCA_000425305.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.98	no
125438	anaerobic	anaerobicⓘ	no	97.33	no
125438	aerobic	aerobicⓘ	yes	90.37	no
125438	spore-forming	spore-formingⓘ	no	92.33	no
125438	thermophilic	thermophileⓘ	no	98.40	no
125438	flagellated	motile2+ⓘ	no	94.00	no

Literature

Title	Authors	Journal	DOI	Year
Cytochalasins from the Ash Endophytic Fungus Nemania diffusa DSM 116299.	Demir O, Schmidt K, Schulz B, Stradal TEB, Surup F.	Molecules	10.3390/molecules30040957	2025
Semirational Design of SenC to Enhance Organic Selenium Biosynthesis.	Shao K, Yu X, Zhao Y, Zhang Y, Liu X.	Microb Biotechnol	10.1111/1751-7915.70130	2025
Analyzing the genetic diversity and biotechnological potential of Leuconostoc pseudomesenteroides by comparative genomics.	Gumustop I, Ortakci F.	Front Microbiol	10.3389/fmicb.2022.1074366	2022
Substrate binding and catalytic mechanism of the Se-glycosyltransferase SenB in the biosynthesis of selenoneine.	Huang W, Song J, Sun T, He Y, Li X, Deng Z, Long F.	Nat Commun	10.1038/s41467-024-46065-6	2024
Morphological and Metabolite Responses of Potatoes under Various Phosphorus Levels and Their Amelioration by Plant Growth-Promoting Rhizobacteria.	Chea L, Pfeiffer B, Schneider D, Daniel R, Pawelzik E, Naumann M.	Int J Mol Sci	10.3390/ijms22105162	2021
Variovorax guangxiensis sp. nov., an aerobic, 1-aminocyclopropane-1-carboxylate deaminase producing bacterium isolated from banana rhizosphere.	Gao JL, Yuan M, Wang XM, Qiu TL, Li JW, Liu HC, Li XA, Chen J, Sun JG.	Antonie Van Leeuwenhoek	10.1007/s10482-014-0304-3	2015
Psychroserpens luteolus sp. nov., isolated from Gelidium, reclassification of Ichthyenterobacterium magnum as Psychroserpens magnus comb. nov., Flavihalobacter algicola as Psychroserpens algicola comb. nov., Arcticiflavibacter luteus as Psychroserpens luteus comb. nov.	Ping XY, Wang K, Zhang JY, Wang SX, Du ZJ, Mu DS	Arch Microbiol	10.1007/s00203-022-02895-w	2022
Psychroserpens damuponensis sp. nov., isolated from seawater.	Lee DH, Cho SJ, Kim SM, Lee SB	Int J Syst Evol Microbiol	10.1099/ijs.0.041632-0	2012
Psychroserpens burtonensis gen. nov., sp. nov., and Gelidibacter algens gen. nov., sp. nov., psychrophilic bacteria isolated from antarctic lacustrine and sea ice habitats.	Bowman JP, McCammon SA, Brown JL, Nichols PD, McMeekin TA	Int J Syst Bacteriol	10.1099/00207713-47-3-670	1997

References

#4643	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12212
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#36203	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#117078	Collection of Institut Pasteur ; Curators of the CIP; CIP 105822
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Psychroserpens burtonensis (DSM 12212, ACAM 188, ATCC 700359)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000425305

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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