Psychroserpens burtonensis | Type strain | DSM 12212, ACAM 188, ATCC 700359, CIP 105822 | BacDiveID:5631

Strain identifier

BacDive ID: 5631

Type strain:

Species: Psychroserpens burtonensis

Culture col. no.: DSM 12212, ACAM 188, ATCC 700359, CIP 105822

Strain history: CIP <- 1998, ACAM <- 1985, AJ. McGuire, Tasmania Univ., Australia <- P. Franzmann

NCBI tax ID(s): 1123037 (strain), 49278 (species)

SI-ID 43891

ATCC 700359, DSM 12212, LMG 22918, CIP 105822

Section

Psychroserpens burtonensis DSM 12212 is a psychrophilic, Gram-negative bacterium that was isolated from water.

Gram-negative
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Psychroserpens*
	Species	**Psychroserpens burtonensis**
	Full Scientific Name (LPSN)	Psychroserpens burtonensis Bowman et al. 1997

Information on morphological and physiological properties Morphology

[Ref.: #117078]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.972

[Ref.: #117078]	Cell shape	rod-shaped

[Ref.: #117078]	Motility	no

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

Marine agar (MA)

Culture medium growth

Culture medium composition

expand / minimize

[Ref.: #117078]

Culture medium

CIP Medium 13

[Ref.: #117078]

Culture medium growth

[Ref.: #117078]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #4643]			growth	10-15 °C
[Ref.: #36203]			growth	15 °C
[Ref.: #117078]			growth	15-30 °C
[Ref.: #117078]		no	growth	5 °C
[Ref.: #117078]		no	growth	37 °C
[Ref.: #117078]		no	growth	41 °C

[Ref.: #4643]	Temperature range	psychrophilic
[Ref.: #36203]	Temperature range	psychrophilic
[Ref.: #117078]	Temperature range	psychrophilic
[Ref.: #117078]	Temperature range	mesophilic
[Ref.: #117078]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.983

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #117078]		NaCl	no	growth	0	%
[Ref.: #117078]		NaCl	no	growth	2	%
[Ref.: #117078]		NaCl	no	growth	4	%
[Ref.: #117078]		NaCl	no	growth	6	%
[Ref.: #117078]		NaCl	no	growth	8	%

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #117078]		esculin ChEBI	-	hydrolysis
[Ref.: #117078]		nitrate ChEBI	-	reduction
[Ref.: #117078]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #117078]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #117078]		acetoin ChEBI	-
[Ref.: #117078]		glucose ChEBI		-

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #68382]		acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #117078]		alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]		alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]		alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]		alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]		alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]		alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]		alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #117078]		amylase	-
[Ref.: #117078]		beta-galactosidase	-	3.2.1.23
[Ref.: #68382]		beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]		beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]		beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #117078]		caseinase	+	3.4.21.50
[Ref.: #117078]		catalase	+	1.11.1.6
[Ref.: #68382]		cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #117078]		DNase	+
[Ref.: #68382]		esterase (C 4)	+		* from API zym
[Ref.: #68382]		esterase lipase (C 8)	-		* from API zym
[Ref.: #117078]		gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #117078]		gelatinase	+
[Ref.: #117078]		lecithinase	+
[Ref.: #68382]		leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #117078]		lipase	-
[Ref.: #68382]		lipase (C 14)	-		* from API zym
[Ref.: #117078]		lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]		N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]		naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #117078]		ornithine decarboxylase	-	4.1.1.17
[Ref.: #117078]		oxidase	+
[Ref.: #117078]		phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #68382]		trypsin	+	3.4.21.4	* from API zym
[Ref.: #117078]		tryptophan deaminase	-
[Ref.: #117078]		tween esterase	+
[Ref.: #117078]		urease	-	3.5.1.5
[Ref.: #68382]		valine arylamidase	+		* from API zym
		Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #117078]	9022	-	+	+	-	-	+	+	+	+	+	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4643]	Sample type/isolated from	water
[Ref.: #4643]	Geographic location (country and/or sea, region)	Buton Lake, 10.4m depth, Vestfold Hills
[Ref.: #4643]	Continent	Australia and Oceania

[Ref.: #117078]	Sample type/isolated from	Environment, Water samples
[Ref.: #117078]	Geographic location (country and/or sea, region)	Burton lake
[Ref.: #117078]	Country	Antarctica
[Ref.: #117078]	Country ISO 3 Code	ATA
[Ref.: #117078]	Continent	Antarctica
[Ref.: #117078]	Isolation date	1984
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

-

What are isolation sources categories?

Global distribution of 16S sequence NR_029190 (>99% sequence identity) for Psychroserpens burtonensis subclade from Microbeatlas

Aquatic Samples	77
Soil Samples	16
Animal Samples	4
Plant Samples
Total Samples	97

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4643]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #117078]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4643]	Psychroserpens burtonensis strain ACAM 188 16S ribosomal RNA, partial sequence	NR_029190	1484	GenBank	49278 tax ID
[Ref.: #20218]	Psychroserpens burtonensis ACAM188 16s ribosomal RNA gene, partial sequence	U62913	1484	ENA	49278 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Psychroserpens burtonensis DSM 12212	GCA_000425305	scaffold	GenBank	1123037 tax ID	*
[Ref.: #66792]	Psychroserpens burtonensis DSM 12212	1123037.4	wgs	PATRIC	1123037 tax ID	*
[Ref.: #66792]	Psychroserpens burtonensis DSM 12212	2524023130	draft	JGI IMG/M	1123037 tax ID	*

GC-content

33.4 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Psychroserpens burtonensis DSM 12212 DSM 12212 NCBI: GCA_000425305.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Psychroserpens burtonensis DSM 12212 DSM 12212 NCBI: GCA_000425305.1
[Ref.: #69480]	motile	no	87.353	no
[Ref.: #69480]	flagellated	no	96.013	no
[Ref.: #69480]	gram-positive	no	98.115	no
[Ref.: #69480]	anaerobic	no	98.555	no
[Ref.: #69480]	aerobic	yes	88.961	no
[Ref.: #69480]	halophile	no	65.141	no
[Ref.: #69480]	spore-forming	no	94.675	no
[Ref.: #69480]	thermophile	no	99.771	yes
[Ref.: #69480]	glucose-util	yes	83.007	no
[Ref.: #69480]	glucose-ferment	no	90.626	no

Availability in culture collections External links

Culture collection no.

DSM 12212, ACAM 188, ATCC 700359, CIP 105822

SI-ID 43891

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Psychroserpens luteolus sp. nov., isolated from Gelidium, reclassification of Ichthyenterobacterium magnum as Psychroserpens magnus comb. nov., Flavihalobacter algicola as Psychroserpens algicola comb. nov., Arcticiflavibacter luteus as Psychroserpens luteus comb. nov.	Ping XY, Wang K, Zhang JY, Wang SX, Du ZJ, Mu DS	Arch Microbiol	10.1007/s00203-022-02895-w	2022	*
Phylogeny	Psychroserpens damuponensis sp. nov., isolated from seawater.	Lee DH, Cho SJ, Kim SM, Lee SB	Int J Syst Evol Microbiol	10.1099/ijs.0.041632-0	2012	*
Phylogeny	Psychroserpens burtonensis gen. nov., sp. nov., and Gelidibacter algens gen. nov., sp. nov., psychrophilic bacteria isolated from antarctic lacustrine and sea ice habitats.	Bowman JP, McCammon SA, Brown JL, Nichols PD, McMeekin TA	Int J Syst Bacteriol	10.1099/00207713-47-3-670	1997	*

References

#4643

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12212

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#36203 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75114

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID43891.1 )

#117078 Collection of Institut Pasteur ; Curators of the CIP; CIP 105822
* These data were automatically processed and therefore are not curated

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