Name: Maribacter arcticus DSM 23546
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5613

Type strain:

Species: Maribacter arcticus

Culture col. no.: DSM 23546, JCM 14790, KCTC 22053, KOPRI 20941, CIP 110780

Strain history: CIP <- 2014, KCTC

NCBI tax ID(s): 561365 (species)

SI-ID 406972

DSM 23546

Section

Maribacter arcticus DSM 23546 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from marine sediment.

Gram-negative
rod-shaped
aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Maribacter*
	Species	**Maribacter arcticus**
	Full Scientific Name (LPSN)	Maribacter arcticus Cho et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32476]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #116478]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.956

[Ref.: #32476]	Cell length	2.15 µm

[Ref.: #32476]	Cell width	0.4 µm

[Ref.: #32476]	Cell shape	rod-shaped
[Ref.: #116478]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #32476]	Motility	no
[Ref.: #116478]	Motility	yes
[Ref.: #67771]	Motility	no

[Ref.: #32476]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17277]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #17277]

Culture medium growth

[Ref.: #17277]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17277]

Culture medium composition

expand / minimize

[Ref.: #41593]

Culture medium

Marine agar (MA)

[Ref.: #41593]

Culture medium growth

[Ref.: #41593]

Culture medium composition

expand / minimize

[Ref.: #116478]

Culture medium

CIP Medium 13

[Ref.: #116478]

Culture medium growth

[Ref.: #116478]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #17277]	growth	20 °C
[Ref.: #32476]	growth	04-30 °C
[Ref.: #32476]	optimum	21 °C
[Ref.: #41593]	growth	20 °C
[Ref.: #67770]	growth	20 °C
[Ref.: #67771]	growth	20-22 °C

[Ref.: #17277]	Temperature range	psychrophilic
[Ref.: #32476]	Temperature range	psychrophilic
[Ref.: #41593]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic
[Ref.: #67771]	Temperature range	psychrophilic

	pH	Kind of pH		pH
[Ref.: #32476]			optimum	6
[Ref.: #32476]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32476]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32476]		NaCl		optimum	2.35	%

[Ref.: #67770]	Observation	quinones: MK-6
[Ref.: #67771]	Observation	quinones: MK-6

	Enzyme	Enzyme activity	EC number
[Ref.: #32476]	acid phosphatase	+	3.1.3.2
[Ref.: #32476]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32476]	catalase	+	1.11.1.6
[Ref.: #32476]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17277]	Sample type/isolated from	marine sediment
[Ref.: #17277]	Geographic location (country and/or sea, region)	Spitsbergen, Ny-Ålesund
[Ref.: #17277]	Country	Norway
[Ref.: #17277]	Country ISO 3 Code	NOR
[Ref.: #17277]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Marine sediment sample collected at Ny-Ålesund
[Ref.: #67770]	Geographic location (country and/or sea, region)	Spitsbergen Islands
[Ref.: #67770]	Country	Norway
[Ref.: #67770]	Country ISO 3 Code	NOR
[Ref.: #67770]	Continent	Europe

[Ref.: #67771]	Sample type/isolated from	From marine sediment from Ny-AÂ° lesund
[Ref.: #67771]	Geographic location (country and/or sea, region)	Spitsbergen
[Ref.: #67771]	Country	Norway
[Ref.: #67771]	Country ISO 3 Code	NOR
[Ref.: #67771]	Continent	Europe

[Ref.: #116478]	Sample type/isolated from	Environment, Sample of marine sediment
[Ref.: #116478]	Geographic location (country and/or sea, region)	Ny-Alesund, Spitsbergen Islands, Norway
[Ref.: #116478]	Country	Norway
[Ref.: #116478]	Country ISO 3 Code	NOR
[Ref.: #116478]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY771762 (>99% sequence identity) for Maribacter arcticus subclade from Microbeatlas

Aquatic Samples	487
Soil Samples	21
Animal Samples	11
Plant Samples	1
Total Samples	520

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17277]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116478]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17277]	Maribacter arcticus strain KOPRI 20941 16S ribosomal RNA gene, partial sequence	AY771762	1490	ENA	561365 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Maribacter arcticus DSM 23546	GCA_900167935	scaffold	GenBank	561365 tax ID	*
[Ref.: #66792]	Maribacter arcticus strain DSM 23546	561365.3	wgs	PATRIC	561365 tax ID	*
[Ref.: #66792]	Maribacter arcticus DSM 23546	2595698209	draft	JGI IMG/M	561365 tax ID	*

[Ref.: #17277]	GC-content	36 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #32476]	GC-content	36 mol%
[Ref.: #67771]	GC-content	36.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Maribacter arcticus DSM 23546 NCBI: GCA_900167935.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Maribacter arcticus DSM 23546 NCBI: GCA_900167935.1
[Ref.: #69480]	motile	no	89.561	yes
[Ref.: #69480]	flagellated	no	96.299	no
[Ref.: #69480]	gram-positive	no	97.497	yes
[Ref.: #69480]	anaerobic	no	99.557	yes
[Ref.: #69480]	aerobic	yes	92.223	yes
[Ref.: #69480]	halophile	no	78.547	no
[Ref.: #69480]	spore-forming	no	96.796	no
[Ref.: #69480]	thermophile	no	98.566	no
[Ref.: #69480]	glucose-util	yes	88.525	no
[Ref.: #69480]	glucose-ferment	no	89.176	no

Availability in culture collections External links

[Ref.: #17277]

Culture collection no.

DSM 23546, JCM 14790, KCTC 22053, KOPRI 20941, CIP 110780

[Ref.: #75095]	SI-ID 406972	*
[Ref.: #75096]	SI-ID 413392	*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Maribacter pelagius sp. nov., isolated from seawater.	Jin M, Kim M, Kim JY, Song HS, Cha IT, Roh SW, Lee SJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002203	2017	*
Phylogeny	Maribacter caenipelagi sp. nov., a member of the Flavobacteriaceae isolated from a tidal flat sediment of the Yellow Sea in Korea.	Jung YT, Lee JS, Yoon JH	Antonie Van Leeuwenhoek	10.1007/s10482-014-0243-z	2014	*
Phylogeny	Maribacter chungangensis sp. nov., isolated from a green seaweed, and emended descriptions of the genus Maribacter and Maribacter arcticus.	Weerawongwiwat V, Kang H, Jung MY, Kim W	Int J Syst Evol Microbiol	10.1099/ijs.0.039628-0	2012	*
Phylogeny	Maribacter antarcticus sp. nov., a psychrophilic bacterium isolated from a culture of the Antarctic green alga Pyramimonas gelidicola.	Zhang GI, Hwang CY, Kang SH, Cho BC	Int J Syst Evol Microbiol	10.1099/ijs.0.006056-0	2009	*
Phylogeny	Maribacter arcticus sp. nov., isolated from Arctic marine sediment.	Cho KH, Hong SG, Cho HH, Lee YK, Chun J, Lee HK	Int J Syst Evol Microbiol	10.1099/ijs.0.65549-0	2008	*

References

#17277

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23546

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32476

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28696 (see below)

#41593 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75095

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406972.1 )

#75096

#116478 Collection of Institut Pasteur ; Curators of the CIP; CIP 110780

#28696

IJSEM 1300 2008 ( DOI 10.1099/ijs.0.65549-0 , PubMed 18523168 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Maribacter arcticus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF