Maribacter ulvicola (DSM 15366, KCTC 12969, KMM 3951)

Name: Maribacter ulvicola (DSM 15366, KCTC 12969, KMM 3951)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5607

Type strain

Strain Designation M-3Alg 46-1

Variant Isotype of BacDive ID 131101

Culture col. no. DSM 15366 KCTC 12969 KMM 3951 M-3Alg 46-1 CIP 108844 1 more

NCBI tax ID(s) 228959

Special Collections DSMZ KCTC Literature strains CIP

History <- O. I. Nedashkovskaya; M-3Alg 46-1 2005, KMM CIP <- 2005, KMM

Links

Maribacter ulvicola M-3Alg 46-1 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from green alga Ulva fenestrata.

Gram-negative rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 99605

DSM 16479,KCTC 12969,DSM 15366,CIP 108844,KCTC 12669

@ref 20215

Last LPSN update 2026-02-09 11:19:00

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Maribacter

Species Maribacter ulvicola

Full scientific name Maribacter ulvicola Nedashkovskaya et al. 2004

BacDive ID	Other strains from **Maribacter ulvicola** (1)	Type strain
131101	M. ulvicola DSM 16479, KCTC 12969, KMM 3951

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
30026	negative	5 µm	0.275 µm	rod-shaped
123720	negative			rod-shaped
125438					94
125438	negative				97.5
125439	negative				99.3

Colony morphology

Pigmentation

@ref	Production	Name
30026
123720		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5880	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
33077	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
123720	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
5880	positive	growth	25	mesophilic
30026	positive	growth	4.0-32
30026	positive	optimum	22	psychrophilic
33077	positive	growth	25	mesophilic
123720	positive	growth	5-30
123720	negative	growth	37
123720	negative	growth	41
123720	negative	growth	45

Culture pH

@ref	Ability	Type	PH	PH range
30026	positive	optimum	8
30026	positive	growth	5.5-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

30026

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
30026
125438		93.275
125439		98.8

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30026	NaCl	positive	growth	1.0-4.0 %
30026	NaCl	positive	optimum	2.5 %
123720	NaCl	positive	growth	2-8 %
123720	NaCl		growth	0 %
123720	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30026	17057 ChEBI	cellobiose	+	carbon source
123720	4853 ChEBI	esculin	-	hydrolysis
30026	33984 ChEBI	fucose	+	carbon source
30026	17234 ChEBI	glucose	+	carbon source
123720	606565 ChEBI	hippurate	+	hydrolysis
30026	17716 ChEBI	lactose	+	carbon source
123720	15792 ChEBI	malonate	-	assimilation
30026	17306 ChEBI	maltose	+	carbon source
30026	37684 ChEBI	mannose	+	carbon source
123720	17632 ChEBI	nitrate	-	reduction
123720	16301 ChEBI	nitrite	-	reduction
30026	26546 ChEBI	rhamnose	+	carbon source
30026	17992 ChEBI	sucrose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123720	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
123720	15688 ChEBI	acetoin	-
123720	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
123720	alcohol dehydrogenase	-	1.1.1.1
30026	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	+	3.2.1.24	from API zym
123720	amylase	-
68382	beta-galactosidase	+	3.2.1.23	from API zym
123720	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
123720	caseinase	-	3.4.21.50
30026	catalase	+	1.11.1.6
123720	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
30026	cytochrome oxidase	+	1.9.3.1
123720	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
123720	gamma-glutamyltransferase	+	2.3.2.2
123720	gelatinase	-
123720	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
123720	lipase	-
68382	lipase (C 14)	-		from API zym
123720	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123720	ornithine decarboxylase	-	4.1.1.17
123720	oxidase	+
123720	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	+	3.4.21.4	from API zym
123720	tryptophan deaminase	-
123720	tween esterase	+
123720	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123720	-	+	+	+	-	+	+	+	+	+	+	+	+	+	-	+	+	+	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Algae	#Green algae

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
5880	green alga Ulva fenestrata	Ulva fenestrata	Sea of Japan, Gulf of Peter the Great	Russia	RUS	Asia
123720	Green alga, Ulva fenestrata		Troitsa bay, Sea of Japan	Russian Federation	RUS	Europe	2000

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5880	1	Risk group (German classification) According to TRBA 466
123720	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2681813549 annotated assembly for Maribacter ulvicola DSM 15366	contig	GCA_900155985	228959.3	2681813549	228959	73

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
5880	Bacteroidetes bacterium KMM 3951 16S ribosomal RNA gene, partial sequence	AY271626	1448		228959

GC content

@ref	GC-content (mol%)
5880	36.3
30026	36

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Maribacter ulvicola DSM 15366
NCBI: GCA_900155985

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.80	no
125439	motility	BacteriaNetⓘ	no	68.40	no
125439	gram_stain	BacteriaNetⓘ	negative	99.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	80.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Maribacter ulvicola strain DSM 15366
PATRIC: 228959.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.50	yes
125438	anaerobic	anaerobicⓘ	no	94.56	no
125438	spore-forming	spore-formingⓘ	no	93.28	yes
125438	aerobic	aerobicⓘ	yes	86.67	no
125438	thermophilic	thermophileⓘ	no	98.88	yes
125438	flagellated	motile2+ⓘ	no	94.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Maribacter caenipelagi sp. nov., a member of the Flavobacteriaceae isolated from a tidal flat sediment of the Yellow Sea in Korea.	Jung YT, Lee JS, Yoon JH	Antonie Van Leeuwenhoek	10.1007/s10482-014-0243-z	2014
Phylogeny	Maribacter gen. nov., a new member of the family Flavobacteriaceae, isolated from marine habitats, containing the species Maribacter sedimenticola sp. nov., Maribacter aquivivus sp. nov., Maribacter orientalis sp. nov. and Maribacter ulvicola sp. nov.	Nedashkovskaya OI, Kim SB, Han SK, Lysenko AM, Rohde M, Rhee MS, Frolova GM, Falsen E, Mikhailov VV, Bae KS	Int J Syst Evol Microbiol	10.1099/ijs.0.02849-0	2004

References

#5880	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15366
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26390	IJSEM 1017 2004 ( DOI 10.1099/ijs.0.02849-0 , PubMed 15280264 )
#30026	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26390
#33077	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#123720	Collection of Institut Pasteur ; Curators of the CIP; CIP 108844
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Maribacter ulvicola (DSM 15366, KCTC 12969, KMM 3951)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900155985

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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