Name: Maribacter aquivivus KMM 3949
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5606

Type strain:

Species: Maribacter aquivivus

Culture col. no.: KMM 3949, CIP 108495, DSM 16478, CCUG 48009, KCTC 12968

Strain history: CIP <- 2004, CCUG <- 2003, KMM

NCBI tax ID(s): 228958 (species)

SI-ID 99604

KCTC 12968, CCUG 48009, CIP 108495, DSM 16478

Section

Maribacter aquivivus KMM 3949 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sea water sample.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Maribacter*
	Species	**Maribacter aquivivus**
	Full Scientific Name (LPSN)	Maribacter aquivivus Nedashkovskaya et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #30026]	Gram stain	negative
[Ref.: #116464]	Gram stain	negative

[Ref.: #30026]	Cell length	2.5 µm

[Ref.: #30026]	Cell width	0.45 µm

[Ref.: #30026]	Cell shape	rod-shaped
[Ref.: #116464]	Cell shape	rod-shaped

[Ref.: #30026]	Motility	no
[Ref.: #116464]	Motility	yes

[Ref.: #57949]

Incubation period

2 days

[Ref.: #30026]	Pigment production	yes
[Ref.: #116464]	Pigment production	no
[Ref.: #116464]	Pigment name	Flexirubin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6466]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6466]

Culture medium growth

[Ref.: #6466]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6466]

Culture medium composition

expand / minimize

[Ref.: #33250]

Culture medium

Marine agar (MA)

[Ref.: #33250]

Culture medium growth

[Ref.: #33250]

Culture medium composition

expand / minimize

[Ref.: #116464]

Culture medium

CIP Medium 13

[Ref.: #116464]

Culture medium growth

[Ref.: #116464]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6466]		growth	28 °C
[Ref.: #30026]		growth	4.0-30 °C
[Ref.: #30026]		optimum	22 °C
[Ref.: #33250]		growth	30 °C
[Ref.: #57949]		growth	30 °C
[Ref.: #116464]		growth	5-30 °C
[Ref.: #116464]	no	growth	37 °C
[Ref.: #116464]	no	growth	41 °C
[Ref.: #116464]	no	growth	45 °C

[Ref.: #6466]	Temperature range	mesophilic
[Ref.: #30026]	Temperature range	psychrophilic
[Ref.: #33250]	Temperature range	mesophilic
[Ref.: #57949]	Temperature range	mesophilic
[Ref.: #116464]	Temperature range	mesophilic
[Ref.: #116464]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #30026]			optimum	8
[Ref.: #30026]			growth	5.5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30026]	Oxygen tolerance	aerobe
[Ref.: #57949]	Oxygen tolerance	aerobe

[Ref.: #30026]

Ability of spore formation

	Salt	Tested relation		Salt conc.
[Ref.: #30026]	NaCl		growth	1.0-7.0	%
[Ref.: #30026]	NaCl		optimum	4	%
[Ref.: #116464]	NaCl		growth	4-10	%
[Ref.: #116464]	NaCl	no	growth	0	%
[Ref.: #116464]	NaCl	no	growth	2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #116464]	esculin ChEBI	+	hydrolysis
[Ref.: #30026]	glucose ChEBI	+	carbon source
[Ref.: #116464]	hippurate ChEBI	+	hydrolysis
[Ref.: #30026]	lactose ChEBI	+	carbon source
[Ref.: #116464]	malonate ChEBI	-	assimilation
[Ref.: #30026]	mannose ChEBI	+	carbon source
[Ref.: #30026]	nitrate ChEBI	+	reduction
[Ref.: #116464]	nitrate ChEBI	-	reduction
[Ref.: #116464]	nitrite ChEBI	-	reduction
[Ref.: #30026]	sucrose ChEBI	+	carbon source
[Ref.: #30026]	tween 20 ChEBI	+	carbon source
[Ref.: #30026]	tween 40 ChEBI	+	carbon source
[Ref.: #30026]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #116464]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #116464]		acetoin ChEBI	-
[Ref.: #116464]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116464]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #30026]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #116464]	amylase	+
[Ref.: #116464]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116464]	caseinase	+	3.4.21.50
[Ref.: #30026]	catalase	+	1.11.1.6
[Ref.: #116464]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #30026]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116464]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #116464]	gelatinase	+/-
[Ref.: #116464]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #116464]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116464]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116464]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116464]	oxidase	+
[Ref.: #116464]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #116464]	protease	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #116464]	tryptophan deaminase	-
[Ref.: #116464]	tween esterase	+
[Ref.: #116464]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116464]	11227	-	+	+	+	-	+	+	-	+	-	+	+	+	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6466]	Sample type/isolated from	sea water sample
[Ref.: #6466]	Geographic location (country and/or sea, region)	Sea of Japan, Gulf of Peter the Great
[Ref.: #6466]	Country	International Waters
[Ref.: #6466]	Continent	Asia

[Ref.: #57949]	Sample type/isolated from	Seawater
[Ref.: #57949]	Geographic location (country and/or sea, region)	Gulf of Peter the Great
[Ref.: #57949]	Continent	Asia

[Ref.: #116464]	Sample type/isolated from	Environment, Sea water
[Ref.: #116464]	Country	Japan
[Ref.: #116464]	Country ISO 3 Code	JPN
[Ref.: #116464]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY271625 (>99% sequence identity) for Maribacter aquivivus from Microbeatlas

Aquatic Samples	456
Soil Samples	3
Animal Samples	9
Plant Samples	1
Total Samples	469

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6466]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116464]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6466]	Bacteroidetes bacterium KMM 3949 16S ribosomal RNA gene, partial sequence	AY271625	1441	ENA	228958 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Maribacter aquivivus DSM 16478	GCA_900142175	scaffold	GenBank	228958 tax ID	*
[Ref.: #66792]	Maribacter aquivivus strain DSM 16478	228958.3	wgs	PATRIC	228958 tax ID	*
[Ref.: #66792]	Maribacter aquivivus DSM 16478	2622736581	draft	JGI IMG/M	228958 tax ID	*

[Ref.: #6466]	GC-content	35.0 mol%
[Ref.: #30026]	GC-content	35 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Maribacter aquivivus DSM 16478 NCBI: GCA_900142175.1
[Ref.: #69480]	motile	no	86.783	yes
[Ref.: #69480]	flagellated	no	95.363	yes
[Ref.: #69480]	gram-positive	no	97.136	no
[Ref.: #69480]	anaerobic	no	99.678	yes
[Ref.: #69480]	aerobic	yes	94.187	yes
[Ref.: #69480]	halophile	no	70.32	no
[Ref.: #69480]	spore-forming	no	96.596	no
[Ref.: #69480]	thermophile	no	98.848	yes
[Ref.: #69480]	glucose-util	yes	88.795	yes
[Ref.: #69480]	glucose-ferment	no	87.897	no

Availability in culture collections External links

[Ref.: #6466]

Culture collection no.

KMM 3949, CIP 108495, DSM 16478, CCUG 48009, KCTC 12968

[Ref.: #75088]

SI-ID 99604

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Maribacter caenipelagi sp. nov., a member of the Flavobacteriaceae isolated from a tidal flat sediment of the Yellow Sea in Korea.	Jung YT, Lee JS, Yoon JH	Antonie Van Leeuwenhoek	10.1007/s10482-014-0243-z	2014	*
Phylogeny	Maribacter gen. nov., a new member of the family Flavobacteriaceae, isolated from marine habitats, containing the species Maribacter sedimenticola sp. nov., Maribacter aquivivus sp. nov., Maribacter orientalis sp. nov. and Maribacter ulvicola sp. nov.	Nedashkovskaya OI, Kim SB, Han SK, Lysenko AM, Rohde M, Rhee MS, Frolova GM, Falsen E, Mikhailov VV, Bae KS	Int J Syst Evol Microbiol	10.1099/ijs.0.02849-0	2004	*

References

#6466

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16478

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30026

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26390 (see below)

#33250 ; Curators of the CIP;
#57949 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48009

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75088

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID99604.1 )

#116464 Collection of Institut Pasteur ; Curators of the CIP; CIP 108495

#26390

IJSEM 1017 2004 ( DOI 10.1099/ijs.0.02849-0 , PubMed 15280264 )

* These data were automatically processed and therefore are not curated

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Maribacter aquivivus DSM 16478

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