Name: Gluconobacter cerinus DSM 9533
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 56

Type strain:

Species: Gluconobacter cerinus

Variant: Colony variant of BacDive ID 57

Culture col. no.: DSM 9533, ATCC 19441, IFO 3267, LMG 1368, NBRC 3267, JCM 25108, BCRC 16009, CCM 1806, CIP 103150, DSM 9534, LMG 1361, NRIC 0229, NRRL B-4241, VTT E-011791

Strain history: CIP <- 1988, ATCC <- IFO, Gluconobacter cerinus subsp. ammoniacus <- K. Kondo: strain 39, Gluconobacter oxydans

NCBI tax ID(s): 1307945 (strain), 38307 (species)

SI-ID 2862

LMG 1368, ATCC 19441, CCM 1806, IFO 3267, LMG 1361, CIP 103150, DSM 9533, DSM 9534, NBRC 3267, NRRL B-4241, BCRC 16009, CCRC 16009, KCTC 12291, VTT E-011791

Special Collections

Other strains from Gluconobacter cerinus

Section

Gluconobacter cerinus DSM 9533 is a Gram-negative bacterium that was isolated from cherry .

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Gluconobacter*
	Species	**Gluconobacter cerinus**
	Full Scientific Name (LPSN)	Gluconobacter cerinus (ex Asai 1935) Yamada and Akita 1984

Synonym

Gluconobacter asaii

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97.25

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3628]

Culture medium

GLUCONOBACTER OXYDANS MEDIUM (DSMZ Medium 105)

[Ref.: #3628]

Culture medium growth

[Ref.: #3628]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3628]

Culture medium composition

expand / minimize

[Ref.: #3628]

Culture medium

YPM MEDIUM (DSMZ Medium 360)

[Ref.: #3628]

Culture medium growth

[Ref.: #3628]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3628]

Culture medium composition

expand / minimize

[Ref.: #40542]

Culture medium

MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii

[Ref.: #40542]

Culture medium growth

[Ref.: #40542]

Culture medium composition

expand / minimize

[Ref.: #118215]

Culture medium

CIP Medium 1

[Ref.: #118215]

Culture medium growth

[Ref.: #118215]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #3628]	growth	28 °C
[Ref.: #40542]	growth	30 °C
[Ref.: #67770]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3628]	Sample type/isolated from	cherry (Prunus sp.)
[Ref.: #3628]	Host species	Prunus
[Ref.: #3628]	Geographic location (country and/or sea, region)	Osaka
[Ref.: #3628]	Country	Japan
[Ref.: #3628]	Country ISO 3 Code	JPN
[Ref.: #3628]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Prunus sp. in Osaka
[Ref.: #67770]	Host species	Prunus sp.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia

[Ref.: #118215]	Sample type/isolated from	Plant, Flower, Pelargonium zonale
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Fruit (Seed)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3628]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118215]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Gluconobacter cerinus NBRC 3267	GCA_002723935	contig	GenBank ENA	38307 tax ID
[Ref.: #66792]	Gluconobacter cerinus strain NBRC 3267	38307.4	wgs	PATRIC	38307 tax ID	*

[Ref.: #67770]

GC-content

56 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Gluconobacter cerinus strain NBRC 3267 PATRIC: 38307.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gluconobacter cerinus strain NBRC 3267 PATRIC: 38307.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.25	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	92.749	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.384	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.151	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.316	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	65.2	no

Availability in culture collections External links

[Ref.: #3628]

Culture collection no.

DSM 9533, ATCC 19441, IFO 3267, LMG 1368, NBRC 3267, JCM 25108, BCRC 16009, CCM 1806, CIP 103150, DSM 9534, LMG 1361, NRIC 0229, NRRL B-4241, VTT E-011791

[Ref.: #69741]

SI-ID 2862

Literature:

Topic	Title	Authors	Journal	DOI	Year
Biotechnology	Candidate Acetic Acid Bacteria Strains for Levan Production.	Anguluri K, La China S, Brugnoli M, De Vero L, Pulvirenti A, Cassanelli S, Gullo M	Polymers (Basel)	10.3390/polym14102000	2022	*
Metabolism	Structural analysis of fructans produced by acetic acid bacteria reveals a relation to hydrocolloid function.	Jakob F, Pfaff A, Novoa-Carballal R, Rubsam H, Becker T, Vogel RF	Carbohydr Polym	10.1016/j.carbpol.2012.10.054	2012	*
Metabolism	Metabolic consequences of a block in the synthesis of 5-keto-D-fructose in a mutant of Gluconobacter cerinus.	Mowshowitz S, Englard S, Avigad G	J Bacteriol	10.1128/jb.119.2.363-370.1974	1974	*
Phylogeny	Identification of strains assigned to the genus Gluconobacter Asai 1935 based on the sequence and the restriction analyses of the 16S-23S rDNA internal transcribed spacer regions.	Yukphan P, Potacharoen W, Nakagawa Y, Tanticharoen M, Yamada Y	J Gen Appl Microbiol	10.2323/jgam.50.9	2004	*
Phylogeny	Gluconobacter asaii Mason and Claus 1989 is a junior subjective synonym of Gluconobacter cerinus Yamada and Akita 1984.	Katsura K, Yamada Y, Uchimura T, Komagata K	Int J Syst Evol Microbiol	10.1099/00207713-52-5-1635	2002	*

References

#3628

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9533

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#40542 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69741

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID2862.1 )

#118215 Collection of Institut Pasteur ; Curators of the CIP; CIP 103150
* These data were automatically processed and therefore are not curated

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Gluconobacter cerinus strain NBRC 3267

Gluconobacter cerinus strain NBRC 3267

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