Aquimarina muelleri (DSM 19832, KCTC 12285, KMM 6020)

Name: Aquimarina muelleri (DSM 19832, KCTC 12285, KMM 6020)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5594

Type strain

Culture col. no. DSM 19832 KCTC 12285 KMM 6020 LMG 22569

NCBI tax ID(s) 1121007 279356

Special Collections DSMZ KCTC

History <- O. I. Nedashkovskaya, Pacific Inst. Bioorg. Chem., RAS, Vladivostok; KMM 6020 <- Seung Bum Kim <- Olga I Nedashkovskaya, KMM, Russia

Links

Aquimarina muelleri DSM 19832 is an aerobe, motile, rod-shaped bacterium that was isolated from sea-water sample.

motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 131845

LMG 22569,KCTC 12285,DSM 19832

@ref 20215

Last LPSN update 2026-02-09 11:19:00

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Aquimarina

Species Aquimarina muelleri

Full scientific name Aquimarina muelleri Nedashkovskaya et al. 2005

Morphology

Cell morphology

@ref	Cell shape	Flagellum arrangement	Gram stain	Confidence
67771	rod-shaped	gliding
67771			negative
125438				90.1
125438			negative	98.481
125439			negative	99.8

Multimedia

@ref:	66793
multimedia content:	EM_DSM_19832_1.jpg
multimedia.multimedia content:	EM_DSM_19832_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_19832_2.jpg
multimedia.multimedia content:	EM_DSM_19832_2.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_19832_3.jpg
multimedia.multimedia content:	EM_DSM_19832_3.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_19832_4.jpg
multimedia.multimedia content:	EM_DSM_19832_4.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8340	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
8340	positive	growth	28
67771	positive	growth	25

Physiology and metabolism

Oxygen tolerance

67771

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125439		96.5

Observation

67771

Observationquinones: MK-6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
8340	sea-water sample	Sea of Japan, Gulf of Peter the Great, Amursky Bay			Asia
67771	From seawater	Amursky Bay, Gulf of Peter the Great, Sea of Japan	Russia	RUS	Asia

Taxonmaps

69479

Global distribution of 16S sequence AY608406 (>99% sequence identity) for Aquimarina muelleri subclade from Microbeatlas

Aquatic Samples	109
Soil Samples	4
Animal Samples	40
Plant Samples
Total Samples	153

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8340	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM43066v1 assembly for Aquimarina muelleri DSM 19832	scaffold	GCA_000430665	1121007.3	2524023059	1121007	57.84
66792	ASM1465135v1 assembly for Aquimarina muelleri KCTC 12285	scaffold	GCA_014651355	279356.3	8110924241	279356	50.98

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
8340	Aquimarina muelleri strain KMM 6020 16S ribosomal RNA gene, partial sequence	AY608406	1427	279356
124043	Aquimarina muelleri strain KCTC 12285 16S ribosomal RNA gene, partial sequence.	MT758055	1328	279356
124043	Aquimarina muelleri strain KCTC 12285 16S ribosomal RNA gene, partial sequence.	MT759915	1326	279356

GC content

67771

GC-content (mol%)31.6-32.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aquimarina muelleri KCTC 12285
NCBI: GCA_014651355

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	80.00	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	motility	BacteriaNetⓘ	yes	59.30	no
125439	spore_formation	BacteriaNetⓘ	no	96.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aquimarina muelleri DSM 19832 DSM 19832
NCBI: GCA_000430665.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.48	no
125438	anaerobic	anaerobicⓘ	no	94.67	yes
125438	aerobic	aerobicⓘ	yes	83.85	yes
125438	spore-forming	spore-formingⓘ	no	87.50	no
125438	thermophilic	thermophileⓘ	no	97.19	yes
125438	flagellated	motile2+ⓘ	no	90.10	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Global analysis of the biosynthetic chemical space of marine prokaryotes.	Wei B, Hu GA, Zhou ZY, Yu WC, Du AQ, Yang CL, Yu YL, Chen JW, Zhang HW, Wu Q, Xuan Q, Xu XW, Wang H.	Microbiome	10.1186/s40168-023-01573-3	2023
Genetics	Chitinolytic and Fungicidal Potential of the Marine Bacterial Strains Habituating Pacific Ocean Regions.	Pentekhina I, Nedashkovskaya O, Seitkalieva A, Gorbach V, Slepchenko L, Kirichuk N, Podvolotskaya A, Son O, Tekutyeva L, Balabanova L.	Microorganisms	10.3390/microorganisms11092255	2023
	Insights into the Antimicrobial Activities and Metabolomes of Aquimarina (Flavobacteriaceae, Bacteroidetes) Species from the Rare Marine Biosphere.	Silva SG, Paula P, da Silva JP, Mil-Homens D, Teixeira MC, Fialho AM, Costa R, Keller-Costa T.	Mar Drugs	10.3390/md20070423	2022
Pathogenicity	Shell Disease Syndrome Is Associated with Reduced and Shifted Epibacterial Diversity on the Carapace of the Crustacean Cancer pagurus.	Bergen N, Kramer P, Romberg J, Wichels A, Gerlach G, Brinkhoff T.	Microbiol Spectr	10.1128/spectrum.03419-22	2022
Genetics	Complete genome sequence of Aquimarina muelleri isolated from the shell of American lobster (Homarus americanus) with epizootic shell disease in Long Island Sound, New York.	Kim M, Toro CM, Ammad M, Pak R, Jeon SJ.	Microbiol Resour Announc	10.1128/mra.00807-25	2025
Phylogeny	Microbiota Dysbiosis in Mytilus chilensis Is Induced by Hypoxia, Leading to Molecular and Functional Consequences.	Montufar-Romero M, Valenzuela-Miranda D, Valenzuela-Munoz V, Morales-Rivera MF, Gallardo-Escarate C.	Microorganisms	10.3390/microorganisms13040825	2025
Transcriptome	Genome analysis of Flaviramulus ichthyoenteri Th78(T) in the family Flavobacteriaceae: insights into its quorum quenching property and potential roles in fish intestine.	Zhang Y, Liu J, Tang K, Yu M, Coenye T, Zhang XH.	BMC Genomics	10.1186/s12864-015-1275-0	2015
Metabolism	C-S bond cleavage by a polyketide synthase domain.	Ma M, Lohman JR, Liu T, Shen B.	Proc Natl Acad Sci U S A	10.1073/pnas.1508437112	2015
Phylogeny	Aquimarina intermedia sp. nov., reclassification of Stanierella latercula (Lewin 1969) as Aquimarina latercula comb. nov. and Gaetbulimicrobium brevivitae Yoon et al. 2006 as Aquimarina brevivitae comb. nov. and emended description of the genus Aquimarina.	Nedashkovskaya OI, Vancanneyt M, Christiaens L, Kalinovskaya NI, Mikhailov VV, Swings J.	Int J Syst Evol Microbiol	10.1099/ijs.0.64155-0	2006
Phylogeny	Aquimarina sediminis sp. nov., isolated from coastal sediment.	Wang NN, Zhou LY, Li YX, Du ZJ	Antonie Van Leeuwenhoek	10.1007/s10482-018-1115-8	2018
Phylogeny	Aquimarina celericrescens sp. nov., isolated from seawater.	Wang NN, Li CM, Li YX, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002733	2018
Phylogeny	Aquimarina aggregata sp. nov., isolated from seawater.	Wang Y, Ming H, Guo W, Chen H, Zhou C	Int J Syst Evol Microbiol	10.1099/ijsem.0.001209	2016
Phylogeny	Aquimarina penaei sp. nov., isolated from intestinal tract contents of Pacific white shrimp, Penaeus vannamei.	Li X, Wang L, Huang H, Lai Q, Shao Z	Antonie Van Leeuwenhoek	10.1007/s10482-014-0292-3	2014
Phylogeny	Aquimarina pacifica sp. nov., isolated from seawater.	Zhang Z, Yu T, Xu T, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijs.0.062695-0	2014
Phylogeny	Aquimarina longa sp. nov., isolated from seawater, and emended description of Aquimarina muelleri.	Yu T, Yin Q, Song X, Zhao R, Shi X, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijs.0.041509-0	2012
Phylogeny	Aquimarina litoralis sp. nov., isolated from a coastal seawater.	Oh YS, Kahng HY, Lee YS, Yoon BJ, Lim SB, Jung JS, Oh DC, Lee DH	J Microbiol	10.1007/s12275-010-0088-8	2010
Phylogeny	Description of Aquimarina muelleri gen. nov., sp. nov., and proposal of the reclassification of [Cytophaga] latercula Lewin 1969 as Stanierella latercula gen. nov., comb. nov.	Nedashkovskaya OI, Kim SB, Lysenko AM, Frolova GM, Mikhailov VV, Lee KH, Bae KS	Int J Syst Evol Microbiol	10.1099/ijs.0.63349-0	2005

References

#8340	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19832
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aquimarina muelleri (DSM 19832, KCTC 12285, KMM 6020)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000430665

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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